Lista de obras - Mark D. Wilkinson - Dominio Público Uruguay

A design framework and exemplar metrics for FAIRness

article published in 2017

A design framework and exemplar metrics for FAIRness

artículo científico publicado en 2018

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Analysis of a multilevel diagnosis decision support system and its implications: a case study

artículo científico publicado en 2012

Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt

article by Phillip Lord et al published 2004 in The Semantic Web – ISWC 2004: Third International Semantic Web Conference, Hiroshima, Japan, November 7-11, 2004. Proceedings

Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework

scientific article published on 21 October 2019

Automatic definition of robust microbiome sub-states in longitudinal data

Automatic detection and resolution of measurement-unit conflicts in aggregated data

artículo científico publicado en 2014

Automatically exposing OpenLifeData via SADI semantic Web Services

artículo científico publicado en 2014

BioHackathon 2015: Semantics of data for life sciences and reproducible research

artículo científico publicado en 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

artículo científico publicado en 2014

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

artículo científico publicado en 2019

BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case

artículo científico

BioMOBY: an open source biological web services proposal

artículo científico

BioMoby extensions to the Taverna workflow management and enactment software

artículo científico publicado en 2006

Bioinformatics Tools for Next-Generation RNA Sequencing Analysis

article published in 2014

Bioscientific Data Processing and Modeling

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud

artículo científico publicado en 2017

Common conditions of use elements. Atomic concepts for consistent and effective information governance

artículo científico publicado en 2024

Community-driven governance of FAIRness assessment: an open issue, an open discussion

artículo científico publicado en 2023

Community-driven governance of FAIRness assessment: an open issue, an open discussion

artículo científico publicado en 2022

Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum

artículo científico publicado en 2004

Data-driven classification of the certainty of scholarly assertions

scientific article published on 21 April 2020

DataBiNS-Viz: A Web-Based Tool for Visualization of Non-Synonymous SNP Data

scholarly article by Fong Chun Chan et al published 17 July 2008 in Journal of Proteomics and Bioinformatics

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs

artículo científico publicado en 2007

Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker

artículo científico publicado en 2015

Evaluating FAIR maturity through a scalable, automated, community-governed framework

artículo científico publicado en 2019

Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

Executing SADI services in Galaxy

artículo científico publicado en 2014

Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web.

artículo científico publicado en 2012

FAIR Data Point: A FAIR-oriented approach for metadata publication

artículo científico publicado en 2022

FAIR Principles: Interpretations and Implementation Considerations

scholarly article

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Fast, cheap and out of control: a zero curation model for ontology development.

artículo científico

Gbrowse Moby: a Web-based browser for BioMoby Services

artículo científico publicado en 2006

Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa

scientific article published on 01 December 2019

Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae

Genomics Data Resources: Frameworks and Standards ⬇️

artículo científico publicado el 1 de enero de 2012

Genquire: genome annotation browser/editor

artículo científico publicado en 2002

Getting your DUCs in a row - standardising the representation of Digital Use Conditions

artículo científico publicado en 2024

Interoperability and FAIRness through a novel combination of Web technologies ⬇️

artículo científico publicado en 2017

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

artículo científico publicado en 2008

MECP2 variation in Rett syndrome - an overview of current coverage of genetic and phenotype data within existing databases

artículo científico publicado en 2018

Moby and Moby 2: creatures of the deep (web).

artículo científico

Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae

artículo científico publicado en 2016

Nanopublishing Clinical Diagnoses: Tracking Diagnostic Knowledge Base Content and Utilization

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows

artículo científico publicado en 2013

OWL-DL Domain-Models as Abstract Workflows

OWL2Perl: creating Perl modules from OWL class definitions

artículo científico publicado en 2010

Ontology engineering using volunteer labor

Optimization of Distributed SPARQL Queries Using Edmonds' Algorithm and Prim's Algorithm

Preparing Data at the Source to Foster Interoperability across Rare Disease Resources

artículo científico publicado en 2017

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base ⬇️

artículo científico publicado en 2016

Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples.

artículo científico publicado en 2015

RO-Crate Metadata Specification 1.1.1

artículo científico

Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources ⬇️

article by Marco Roos et al published 19 February 2017 in Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences

Robust and automatic definition of microbiome states

scientific article published in 2019

SADI, SHARE, and the in silico scientific method

artículo científico publicado en 2010

SHARE: A Semantic Web Query Engine for Bioinformatics

SPARQL assist language-neutral query composer

artículo científico publicado en 2012

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data

artículo científico publicado en 2022

Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins

Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework

artículo científico

Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics

artículo científico publicado en 2009

Temporal microbiome road-maps guided by perturbations

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

artículo científico publicado en 2011

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

artículo científico publicado en 2013

The Bioperl toolkit: Perl modules for the life sciences

artículo científico publicado en 2002

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

artículo científico publicado en 2010

The FAIR Guiding Principles for scientific data management and stewardship

artículo científico publicado en 2016

The Life Sciences Semantic Web is full of creeps!

artículo científico publicado en 2006

The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions

artículo científico publicado en 2013

The SADI plug-in to IO informatics' sentient knowledge explorer

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

artículo científico publicado en 2011

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery ⬇️

artículo científico publicado en 2014

The emergent discipline of health web science

artículo científico publicado en 2013

The generation challenge programme platform: semantic standards and workbench for crop science

artículo científico publicado en 2008

The relationship between host lifespan and pathogen reservoir potential: an analysis in the system Arabidopsis thaliana--cucumber mosaic virus

artículo científico publicado en 2014

Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services

VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.

artículo científico publicado en 2015

Vcsa1 gene peptides for the treatment of inflammatory and allergic reactions.

artículo científico publicado en 2007

Virulence- and signaling-associated genes display a preference for long 3′UTRs during rice infection and metabolic stress in the rice blast fungus

article

Web Services and the Semantic Web for Life Science Data

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website

artículo científico publicado en 2006

Lista de obras de Mark D. Wilkinson

A design framework and exemplar metrics for FAIRness

A design framework and exemplar metrics for FAIRness

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Analysis of a multilevel diagnosis decision support system and its implications: a case study

Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt

Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework

Automatic definition of robust microbiome sub-states in longitudinal data

Automatic definition of robust microbiome sub-states in longitudinal data

Automatic detection and resolution of measurement-unit conflicts in aggregated data

Automatically exposing OpenLifeData via SADI semantic Web Services

BioHackathon 2015: Semantics of data for life sciences and reproducible research

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case

BioMOBY: an open source biological web services proposal

BioMoby extensions to the Taverna workflow management and enactment software

Bioinformatics Tools for Next-Generation RNA Sequencing Analysis

Bioscientific Data Processing and Modeling

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud

Common conditions of use elements. Atomic concepts for consistent and effective information governance

Community-driven governance of FAIRness assessment: an open issue, an open discussion

Community-driven governance of FAIRness assessment: an open issue, an open discussion

Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum

Data-driven classification of the certainty of scholarly assertions

Data-driven classification of the certainty of scholarly assertions

Data-driven classification of the certainty of scholarly assertions

DataBiNS-Viz: A Web-Based Tool for Visualization of Non-Synonymous SNP Data

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs

Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker

Evaluating FAIR maturity through a scalable, automated, community-governed framework

Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

Executing SADI services in Galaxy

Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web.

FAIR Data Point: A FAIR-oriented approach for metadata publication

FAIR Principles: Interpretations and Implementation Considerations

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Fast, cheap and out of control: a zero curation model for ontology development.

Gbrowse Moby: a Web-based browser for BioMoby Services

Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa

Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae

Genomics Data Resources: Frameworks and Standards ⬇️

Genquire: genome annotation browser/editor

Getting your DUCs in a row - standardising the representation of Digital Use Conditions

Interoperability and FAIRness through a novel combination of Web technologies ⬇️

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

MECP2 variation in Rett syndrome - an overview of current coverage of genetic and phenotype data within existing databases

Moby and Moby 2: creatures of the deep (web).

Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae

Nanopublishing Clinical Diagnoses: Tracking Diagnostic Knowledge Base Content and Utilization

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows

OWL-DL Domain-Models as Abstract Workflows

OWL2Perl: creating Perl modules from OWL class definitions

Ontology engineering using volunteer labor

Optimization of Distributed SPARQL Queries Using Edmonds' Algorithm and Prim's Algorithm

Preparing Data at the Source to Foster Interoperability across Rare Disease Resources

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base ⬇️

Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples.

RO-Crate Metadata Specification 1.1.1

Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources ⬇️

Robust and automatic definition of microbiome states

SADI, SHARE, and the in silico scientific method

SHARE: A Semantic Web Query Engine for Bioinformatics

SPARQL assist language-neutral query composer

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data

Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins

Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework

Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics

Tag clouds for summarizing web search results

Temporal microbiome road-maps guided by perturbations

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

The Bioperl toolkit: Perl modules for the life sciences

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

The FAIR Guiding Principles for scientific data management and stewardship

The Life Sciences Semantic Web is full of creeps!