Lista de obras - Benno Schwikowski - Dominio Público Uruguay

A Blood RNA Signature Detecting Severe Disease in Young Dengue Patients at Hospital Arrival

artículo científico publicado en 2018

A clustering approach to Generalized Tree Alignment with application to Alu repeats

A network of protein-protein interactions in yeast

artículo científico publicado en 2000

A shared disease-associated oligodendrocyte signature among multiple CNS pathologies

artículo científico publicado en 2022

Algorithms for phylogenetic footprinting

artículo científico publicado en 2002

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

artículos científicos

Analysis of time-resolved gene expression measurements across individuals

artículo científico publicado en 2013

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

artículo científico publicado en 2007

Automated flow cytometric analysis across large numbers of samples and cell types

artículo científico publicado en 2015

Automated phosphopeptide identification using multiple MS/MS fragmentation modes

artículo científico publicado en 2012

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection

artículo científico publicado en 2015

Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment

artículo científico publicado en 2020

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

artículo científico

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

artículo científico publicado en 2012

Cytoscape: a software environment for integrated models of biomolecular interaction networks

artículo científico publicado en 2003

Deciphering the state of immune silence in fatal COVID-19 patients

artículo científico publicado en 2021

Democratising Knowledge Representation with BioCypher

artículo científico publicado en 2022

Democratizing knowledge representation with BioCypher

Detecting multi-way epistasis in family-based association studies

artículo científico publicado en 2016

Discovering regulatory and signalling circuits in molecular interaction networks

artículo científico publicado en 2002

Discovery of pathways using multiple genome-scale data sets

Evolution of metabolic network organization

artículo científico publicado en 2010

Feature Detection with Controlled Error Rates in LC/MS Images ⬇️

artículo científico publicado el 13 de marzo de 2012

Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis

artículo científico publicado en 2015

Fragmentation-free LC-MS can identify hundreds of proteins

artículo científico

From the exposome to mechanistic understanding of chemical-induced adverse effects

artículo científico publicado en 2016

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring

artículo científico publicado en 2006

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism

artículo científico publicado en 2012

Graph-based methods for analysing networks in cell biology

artículo científico publicado en 2006

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

artículo científico publicado en 2020

Identification of additional proteins in differential proteomics using protein interaction networks

artículo científico

Indexing and Searching a Mass Spectrometry Database

Integration of biological networks and gene expression data using Cytoscape

artículo científico publicado en 2007

LGP2 binds to PACT to regulate RIG-I- and MDA5-mediated antiviral responses

artículo científico publicado en 2019

MUDE: a new approach for optimizing sensitivity in the target-decoy search strategy for large-scale peptide/protein identification

artículo científico publicado en 2010

Mining proteomic data for biomedical research

article published in 2011

Network module identification-A widespread theoretical bias and best practices

artículo científico publicado en 2017

Network-based analysis of omics data: the LEAN method

artículo científico publicado en 2016

On enumerating all minimal solutions of feedback problems

Phylogenetic distances are encoded in networks of interacting pathways

artículo científico publicado en 2008

Predicting protein-peptide interactions via a network-based motif sampler

artículo científico publicado en 2004

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

artículo científico publicado en 2002

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer

artículo científico publicado en 2005

Signal maps for mass spectrometry-based comparative proteomics

artículo científico publicado en 2005

Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity

scientific article published on 13 February 2019

TLM-Quant: an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells

artículo científico publicado en 2013

The Cyni framework for network inference in Cytoscape.

artículo científico publicado en 2014

The Cytoscape Automation app article collection.

artículo científico publicado en 2018

The Cytoscape app article collection.

artículo científico publicado en 2014

The deferred path heuristic for the generalized tree alignment problem

artículo científico publicado en 1997

The deferred path heuristic for the generalized tree alignment problem

The restriction scaffold problem

artículo científico publicado en 2003

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection

artículo científico publicado en 2005

Towards optimally multiplexed applications of universal DNA tag systems

Towards optimally multiplexed applications of universal arrays

artículo científico publicado en 2004

Universal DNA tag systems

article

Universal DNA tag systems: a combinatorial design scheme

artículo científico publicado en 2000

Lista de obras de Benno Schwikowski

A Blood RNA Signature Detecting Severe Disease in Young Dengue Patients at Hospital Arrival

A clustering approach to Generalized Tree Alignment with application to Alu repeats

A network of protein-protein interactions in yeast

A shared disease-associated oligodendrocyte signature among multiple CNS pathologies

Algorithms for phylogenetic footprinting

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

Analysis of time-resolved gene expression measurements across individuals

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

Automated flow cytometric analysis across large numbers of samples and cell types

Automated phosphopeptide identification using multiple MS/MS fragmentation modes

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection

Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

Cytoscape: a software environment for integrated models of biomolecular interaction networks

Deciphering the state of immune silence in fatal COVID-19 patients

Democratising Knowledge Representation with BioCypher

Democratizing knowledge representation with BioCypher

Detecting multi-way epistasis in family-based association studies

Discovering regulatory and signalling circuits in molecular interaction networks

Discovery of pathways using multiple genome-scale data sets

Evolution of metabolic network organization

Feature Detection with Controlled Error Rates in LC/MS Images ⬇️

Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis

Fragmentation-free LC-MS can identify hundreds of proteins

From the exposome to mechanistic understanding of chemical-induced adverse effects

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism

Graph-based methods for analysing networks in cell biology

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

Identification of additional proteins in differential proteomics using protein interaction networks

Indexing and Searching a Mass Spectrometry Database

Integration of biological networks and gene expression data using Cytoscape

LGP2 binds to PACT to regulate RIG-I- and MDA5-mediated antiviral responses

MUDE: a new approach for optimizing sensitivity in the target-decoy search strategy for large-scale peptide/protein identification

Mining proteomic data for biomedical research

Network module identification-A widespread theoretical bias and best practices

Network-based analysis of omics data: the LEAN method

On enumerating all minimal solutions of feedback problems

Phylogenetic distances are encoded in networks of interacting pathways

Predicting protein-peptide interactions via a network-based motif sampler

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer

Signal maps for mass spectrometry-based comparative proteomics

Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity

TLM-Quant: an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells

The Cyni framework for network inference in Cytoscape.

The Cytoscape Automation app article collection.

The Cytoscape app article collection.

The deferred path heuristic for the generalized tree alignment problem

The deferred path heuristic for the generalized tree alignment problem

The restriction scaffold problem

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection

Towards optimally multiplexed applications of universal DNA tag systems

Towards optimally multiplexed applications of universal arrays

Universal DNA tag systems

Universal DNA tag systems: a combinatorial design scheme

Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions