Lista de obras - Richard A. Lempicki - Dominio Público Uruguay

077 PBMC gene expression profiles: Impact of sample handling

article

A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS

artículo científico publicado en 2013

A comparison of microLC/electrospray ionization-MS and GC/MS for the measurement of stable isotope enrichment from a [2H2]-glucose metabolic probe in T-cell genomic DNA.

artículo científico publicado en 2003

Actinomycin D induces high-level resistance to thymidine analogs in replication of human immunodeficiency virus type 1 by interfering with host cell thymidine kinase expression.

artículo científico publicado en 2003

Altered expression of SHIP, a Toll-like receptor pathway inhibitor, is associated with the severity of liver fibrosis in chronic hepatitis C virus infection

artículo científico publicado en 2011

Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis

artículo científico publicado en 2009

Association of interleukin-15-induced peripheral immune activation with hepatic stellate cell activation in persons coinfected with hepatitis C virus and HIV.

artículo científico publicado en 2009

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

artículo científico publicado en 2009

CCL5 mRNA is a marker for early fibrosis in chronic hepatitis C and is regulated by interferon-α therapy and toll-like receptor 3 signalling

artículo científico publicado en 2011

CCL5: a double-edged sword in host defense against the hepatitis C virus

artículo científico publicado en 2011

CD4 T cell survival after intermittent interleukin-2 therapy is predictive of an increase in the CD4 T cell count of HIV-infected patients

artículo científico publicado en 2008

Comparative efficacy, pharmacokinetic, pharmacodynamic activity, and interferon stimulated gene expression of different interferon formulations in HIV/HCV genotype-1 infected patients

artículo científico publicado en 2013

Comparison of mRNA and protein measures of cytokines following vaccination with human papillomavirus-16 L1 virus-like particles

artículo científico publicado en 2010

Correction: LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

artículo científico publicado en 2012

Cutting edge: L-selectin (CD62L) expression distinguishes small resting memory CD4+ T cells that preferentially respond to recall antigen

artículo científico publicado en 2003

Cytokine/chemokine patterns connect host and viral characteristics with clinics during chronic hepatitis C.

artículo científico publicado en 2012

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

artículo científico publicado en 2007

DAVID gene ID conversion tool

artículo científico publicado en 2008

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

artículo científico publicado en 2012

DAVID: Database for Annotation, Visualization, and Integrated Discovery

artículo científico publicado en 2003

Differential effects of HIV viral load and CD4 count on proliferation of naive and memory CD4 and CD8 T lymphocytes

artículo científico publicado en 2011

Differential gene and microRNA expression between etoposide resistant and etoposide sensitive MCF7 breast cancer cell lines

artículo científico publicado en 2012

Distinct and overlapping genomic profiles and antiviral effects of Interferon-λ and -α on HCV-infected and noninfected hepatoma cells.

artículo científico publicado en 2012

Dysregulation of innate immunity in hepatitis C virus genotype 1 IL28B-unfavorable genotype patients: impaired viral kinetics and therapeutic response

artículo científico publicado en 2012

Evaluation of gene expression measurements from commercial microarray platforms ⬇️

artículo científico publicado el 1 de octubre de 2003

Evidence for innate immune system activation in HIV type 1-infected elite controllers.

artículo científico publicado en 2013

Evolution of the pygmy phenotype: evidence of positive selection fro genome-wide scans in African, Asian, and Melanesian pygmies

artículo científico publicado en 2013

Extracting biological meaning from large gene lists with DAVID.

artículo científico publicado en 2009

Functional genomics of innate host defense molecules in normal human monocytes in response to Aspergillus fumigatus

artículo científico publicado en 2006

Gene duplications in prokaryotes can be associated with environmental adaptation

artículo científico publicado en 2010

Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals

artículo científico publicado en 2003

Gene expression profiles in a rabbit model of systemic lupus erythematosus autoantibody production

artículo científico publicado en 2010

Gene expression profiles in hepatitis C virus (HCV) and HIV coinfection: class prediction analyses before treatment predict the outcome of anti-HCV therapy among HIV-coinfected persons

artículo científico publicado en 2006

HIV envelope induces a cascade of cell signals in non-proliferating target cells that favor virus replication

artículo científico publicado en 2002

HIV envelope-directed signaling aberrancies and cell death of CD4+ T cells in the absence of TCR co-stimulation

artículo científico publicado en 1996

HIV infection and antiretroviral therapy have divergent effects on mitochondria in adipose tissue.

artículo científico publicado en 2012

HIV-1 envelope protein binds to and signals through integrin α4β7, the gut mucosal homing receptor for peripheral T cells

artículo científico publicado en 2008

HIV-1 gp120 induces NFAT nuclear translocation in resting CD4+ T-cells

article

High interferon-stimulated gene ISG-15 expression affects HCV treatment outcome in patients co-infected with HIV and HCV.

artículo científico publicado en 2013

Host gene expression changes correlating with anti-HIV-1 effects in human subjects after treatment with peginterferon Alfa-2a

artículo científico publicado en 2012

Human immunodeficiency virus and hepatitis C infections induce distinct immunologic imprints in peripheral mononuclear cells

scientific article published on July 2009

Human immunodeficiency virus viremia induces plasmacytoid dendritic cell activation in vivo and diminished alpha interferon production in vitro.

artículo científico publicado en 2008

IL-2-induced CD4+ T-cell expansion in HIV-infected patients is associated with long-term decreases in T-cell proliferation

artículo científico publicado en 2004

IL-27 inhibits HIV-1 infection in human macrophages by down-regulating host factor SPTBN1 during monocyte to macrophage differentiation

artículo científico publicado en 2013

IL-27, a novel anti-HIV cytokine, activates multiple interferon-inducible genes in macrophages

artículo científico publicado en 2008

Identification and characterization of rapidly dividing U937 clones with differential telomerase activity and gene expression profiles: role of c-Myc/Mad1 and Id/Ets proteins

artículo científico publicado en 2002

Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV

artículo científico publicado en 2001

Identification of novel markers for liver fibrosis in HIV/hepatitis C virus coinfected individuals using genomics-based approach

artículo científico publicado en 2008

Identifying biological themes within lists of genes with EASE

artículo científico publicado en 2003

Immunodeficiency and intrinsic IFN resistance are associated with viral breakthrough to HCV therapy in HIV-coinfected patients

artículo científico publicado en 2007

Increased peripheral expansion of naive CD4+ T cells in vivo after IL-2 treatment of patients with HIV infection

artículo científico publicado en 2002

Induction of prolonged survival of CD4+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients

artículo científico publicado en 2005

Innate Immunity in HIV Infection

article

Innate immune dysfunction in HIV infection: effect of HIV envelope-NK cell interactions

article

Interleukin-2 induced immune effects in human immunodeficiency virus-infected patients receiving intermittent interleukin-2 immunotherapy

artículo científico publicado en 2001

Interleukin-2 inhibits HIV-1 replication in some human T cell lymphotrophic virus-1-infected cell lines via the induction and incorporation of APOBEC3G into the virion

artículo científico publicado en 2013

Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.

artículo científico publicado en 2012

Interleukin-27 is a potent inhibitor of cis HIV-1 replication in monocyte-derived dendritic cells via a type I interferon-independent pathway

artículo científico publicado en 2013

Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties

artículo científico publicado en 2013

LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

artículo científico publicado en 2011

Lifespan of effector memory CD4+ T cells determined by replication-incompetent integrated HIV-1 provirus

artículo científico publicado en 2014

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region

artículo científico publicado en 2006

Mutations in conserved domains of U14 RNA impair 18S ribosomal RNA production in Saccharomyces cerevisiae

artículo científico publicado en 1990

Naïve T-cell dynamics in human immunodeficiency virus type 1 infection: effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion

artículo científico publicado en 2006

Pre-gastrula expression of zebrafish extraembryonic genes

artículo científico publicado en 2010

PubMatrix: a tool for multiplex literature mining

artículo científico publicado en 2003

R5 and X4 HIV envelopes induce distinct gene expression profiles in primary peripheral blood mononuclear cells

artículo científico publicado en 2006

Retinoic acid and liver X receptor agonist synergistically inhibit HIV infection in CD4+ T cells by up-regulating ABCA1-mediated cholesterol efflux

artículo científico publicado en 2012

Retinoic acid-induced downmodulation of telomerase activity in human cancer cells

artículo científico publicado en 2005

Safety, tolerability, and mechanisms of antiretroviral activity of pegylated interferon Alfa-2a in HIV-1-monoinfected participants: a phase II clinical trial

artículo científico publicado en 2010

Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis

artículo científico publicado en 2013

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

artículo científico publicado en 2009

Telomere length and heavy-chain mutation status in familial chronic lymphocytic leukemia

artículo científico publicado en 2002

The CD8+ HLA-DR+ T cells expanded in HIV-1 infection are qualitatively identical to those from healthy controls

artículo científico publicado en 2012

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

artículo científico publicado en 2007

The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-β1 production and FcRL4 expression

artículo científico publicado en 2013

Transcriptomic response to differentiation induction.

artículo científico publicado en 2006

Twice-weekly pegylated interferon-α-2a and ribavirin results in superior viral kinetics in HIV/hepatitis C virus co-infected patients compared to standard therapy

artículo científico publicado en 2011

Zap70 signaling pathway mediates glucocorticoid receptor-dependent transcriptional activation: role in the regulation of annexin 1 expression in T cells

article

Lista de obras de Richard A. Lempicki

077 PBMC gene expression profiles: Impact of sample handling

A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS

A comparison of microLC/electrospray ionization-MS and GC/MS for the measurement of stable isotope enrichment from a [2H2]-glucose metabolic probe in T-cell genomic DNA.

Actinomycin D induces high-level resistance to thymidine analogs in replication of human immunodeficiency virus type 1 by interfering with host cell thymidine kinase expression.

Altered expression of SHIP, a Toll-like receptor pathway inhibitor, is associated with the severity of liver fibrosis in chronic hepatitis C virus infection

Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis

Association of interleukin-15-induced peripheral immune activation with hepatic stellate cell activation in persons coinfected with hepatitis C virus and HIV.

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

CCL5 mRNA is a marker for early fibrosis in chronic hepatitis C and is regulated by interferon-α therapy and toll-like receptor 3 signalling

CCL5: a double-edged sword in host defense against the hepatitis C virus

CD4 T cell survival after intermittent interleukin-2 therapy is predictive of an increase in the CD4 T cell count of HIV-infected patients

Comparative efficacy, pharmacokinetic, pharmacodynamic activity, and interferon stimulated gene expression of different interferon formulations in HIV/HCV genotype-1 infected patients

Comparison of mRNA and protein measures of cytokines following vaccination with human papillomavirus-16 L1 virus-like particles

Correction: LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

Cutting edge: L-selectin (CD62L) expression distinguishes small resting memory CD4+ T cells that preferentially respond to recall antigen

Cytokine/chemokine patterns connect host and viral characteristics with clinics during chronic hepatitis C.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

DAVID gene ID conversion tool

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

DAVID: Database for Annotation, Visualization, and Integrated Discovery

Differential effects of HIV viral load and CD4 count on proliferation of naive and memory CD4 and CD8 T lymphocytes

Differential gene and microRNA expression between etoposide resistant and etoposide sensitive MCF7 breast cancer cell lines

Distinct and overlapping genomic profiles and antiviral effects of Interferon-λ and -α on HCV-infected and noninfected hepatoma cells.

Dysregulation of innate immunity in hepatitis C virus genotype 1 IL28B-unfavorable genotype patients: impaired viral kinetics and therapeutic response

Evaluation of gene expression measurements from commercial microarray platforms ⬇️

Evidence for innate immune system activation in HIV type 1-infected elite controllers.

Evolution of the pygmy phenotype: evidence of positive selection fro genome-wide scans in African, Asian, and Melanesian pygmies

Extracting biological meaning from large gene lists with DAVID.

Functional genomics of innate host defense molecules in normal human monocytes in response to Aspergillus fumigatus

Gene duplications in prokaryotes can be associated with environmental adaptation

Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals

Gene expression profiles in a rabbit model of systemic lupus erythematosus autoantibody production

Gene expression profiles in hepatitis C virus (HCV) and HIV coinfection: class prediction analyses before treatment predict the outcome of anti-HCV therapy among HIV-coinfected persons

HIV envelope induces a cascade of cell signals in non-proliferating target cells that favor virus replication

HIV envelope-directed signaling aberrancies and cell death of CD4+ T cells in the absence of TCR co-stimulation

HIV infection and antiretroviral therapy have divergent effects on mitochondria in adipose tissue.

HIV-1 envelope protein binds to and signals through integrin α4β7, the gut mucosal homing receptor for peripheral T cells

HIV-1 gp120 induces NFAT nuclear translocation in resting CD4+ T-cells

High interferon-stimulated gene ISG-15 expression affects HCV treatment outcome in patients co-infected with HIV and HCV.

Host gene expression changes correlating with anti-HIV-1 effects in human subjects after treatment with peginterferon Alfa-2a

Human immunodeficiency virus and hepatitis C infections induce distinct immunologic imprints in peripheral mononuclear cells

Human immunodeficiency virus viremia induces plasmacytoid dendritic cell activation in vivo and diminished alpha interferon production in vitro.

IL-2-induced CD4+ T-cell expansion in HIV-infected patients is associated with long-term decreases in T-cell proliferation

IL-27 inhibits HIV-1 infection in human macrophages by down-regulating host factor SPTBN1 during monocyte to macrophage differentiation

IL-27, a novel anti-HIV cytokine, activates multiple interferon-inducible genes in macrophages

Identification and characterization of rapidly dividing U937 clones with differential telomerase activity and gene expression profiles: role of c-Myc/Mad1 and Id/Ets proteins

Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV

Identification of novel markers for liver fibrosis in HIV/hepatitis C virus coinfected individuals using genomics-based approach

Identifying biological themes within lists of genes with EASE

Immunodeficiency and intrinsic IFN resistance are associated with viral breakthrough to HCV therapy in HIV-coinfected patients

Increased peripheral expansion of naive CD4+ T cells in vivo after IL-2 treatment of patients with HIV infection

Induction of prolonged survival of CD4+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients

Innate Immunity in HIV Infection

Innate immune dysfunction in HIV infection: effect of HIV envelope-NK cell interactions

Interleukin-2 induced immune effects in human immunodeficiency virus-infected patients receiving intermittent interleukin-2 immunotherapy

Interleukin-2 inhibits HIV-1 replication in some human T cell lymphotrophic virus-1-infected cell lines via the induction and incorporation of APOBEC3G into the virion

Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.

Interleukin-27 is a potent inhibitor of cis HIV-1 replication in monocyte-derived dendritic cells via a type I interferon-independent pathway

Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties

LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

Lifespan of effector memory CD4+ T cells determined by replication-incompetent integrated HIV-1 provirus

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region

Mutations in conserved domains of U14 RNA impair 18S ribosomal RNA production in Saccharomyces cerevisiae

Naïve T-cell dynamics in human immunodeficiency virus type 1 infection: effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion

Pre-gastrula expression of zebrafish extraembryonic genes

PubMatrix: a tool for multiplex literature mining

R5 and X4 HIV envelopes induce distinct gene expression profiles in primary peripheral blood mononuclear cells

Retinoic acid and liver X receptor agonist synergistically inhibit HIV infection in CD4+ T cells by up-regulating ABCA1-mediated cholesterol efflux

Retinoic acid-induced downmodulation of telomerase activity in human cancer cells

Safety, tolerability, and mechanisms of antiretroviral activity of pegylated interferon Alfa-2a in HIV-1-monoinfected participants: a phase II clinical trial

Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Telomere length and heavy-chain mutation status in familial chronic lymphocytic leukemia

The CD8+ HLA-DR+ T cells expanded in HIV-1 infection are qualitatively identical to those from healthy controls

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-β1 production and FcRL4 expression

Transcriptomic response to differentiation induction.

Twice-weekly pegylated interferon-α-2a and ribavirin results in superior viral kinetics in HIV/hepatitis C virus co-infected patients compared to standard therapy

Zap70 signaling pathway mediates glucocorticoid receptor-dependent transcriptional activation: role in the regulation of annexin 1 expression in T cells