Lista de obras - Folker Meyer - Dominio Público Uruguay

A Predator Unmasked: Life Cycle of Bdellovibrio bacteriovorus from a Genomic Perspective

artículo científico publicado en 2004

A metagenomics portal for a democratized sequencing world

artículo científico publicado en 2013

A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.

artículo científico publicado en 2012

A scalable data analysis platform for metagenomics

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud

Annotation of bacterial and archaeal genomes: improving accuracy and consistency

artículo científico publicado en 2007

BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

artículo científico publicado en 2004

BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae)

artículo científico publicado en 2011

BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser

artículo científico publicado en 2005

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

artículo científico publicado en 2013

Bioinformatics support for high-throughput proteomics

artículo científico

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

artículo científico publicado en 2003

COVID-19 pandemic reveals the peril of ignoring metadata standards

scientific article published on 19 June 2020

Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes

artículo científico publicado en 2005

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.

artículo científico publicado en 2008

Comparing expression level-dependent features in codon usage with protein abundance: an analysis of 'predictive proteomics'.

artículo científico publicado en 2004

Complete genome sequence and analysis of Wolinella succinogenes

artículo científico publicado en 2003

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

artículo científico publicado en 2005

Complete genome sequence of the myxobacterium Sorangium cellulosum

artículo científico publicado en 2007

Conceptualizing a Genomics Software Institute (GSI)

artículo científico publicado en 2012

Connecting genotype to phenotype in the era of high-throughput sequencing.

artículo científico publicado en 2011

Consent insufficient for data release-Response

artículo científico publicado en 2019

Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression

article

Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula

artículo científico publicado en 2004

Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti

artículo científico publicado en 2006

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

artículo científico publicado en 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses

artículo científico publicado en 2006

Development of joint application strategies for two microbial gene finders

artículo científico publicado en 2004

Draft genome sequence of Achromobacter piechaudii strain HLE

artículo científico publicado en 2012

Draft genome sequence of Agrobacterium albertimagni strain AOL15

artículo científico publicado en 2012

Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071).

artículo científico publicado en 2012

EMMA: a platform for consistent storage and efficient analysis of microarray data

artículo científico publicado en 2003

FIGfams: yet another set of protein families

artículo científico publicado en 2009

Federation in genomics pipelines: techniques and challenges.

artículo científico publicado en 2017

Finding novel genes in bacterial communities isolated from the environment

article

From genomics to metagenomics

artículo científico publicado en 2012

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

artículo científico publicado en 2011

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

artículo científico publicado en 2012

GISMO--gene identification using a support vector machine for ORF classification

artículo científico publicado en 2006

GenDB--an open source genome annotation system for prokaryote genomes

artículo científico publicado en 2003

Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans

artículo científico publicado en 2007

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

artículo científico publicado en 2006

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

artículo científico publicado en 2014

Genomic standards consortium projects

artículo científico publicado en 2014

Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals

artículo científico publicado en 2008

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

artículo científico publicado en 2005

Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak

artículo científico publicado en 2012

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon

artículo científico publicado en 2010

MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function

artículo científico publicado en 2016

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

artículo científico publicado en 2013

Maternal activation of gap genes in the hover fly Episyrphus

article

Maternal activation of gap genes in the hover fly Episyrphus.

artículo científico publicado en 2010

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

artículo científico publicado en 2010

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

artículo científico publicado en 2010

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

artículo científico publicado en 2010

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

artículo científico publicado en 2011

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

artículo científico publicado en 2010

Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010

artículo científico publicado en 2011

Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel

artículo científico publicado en 2010

Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling

artículo científico publicado en 2010

Metagenomics - a guide from sampling to data analysis

artículo científico publicado en 2012

Metagenomics: A foundling finds its feet

artículo científico publicado en 2010

Metazen - metadata capture for metagenomes

artículo científico publicado en 2014

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

artículo científico publicado en 2011

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

artículo científico publicado en 2017

REGANOR

artículo científico publicado en 2006

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes

artículo científico publicado en 2013

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012

artículo científico publicado en 2012

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal

artículo científico publicado en 2012

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

artículo científico publicado en 2012

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

artículo científico publicado en 2012

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

artículo científico publicado en 2010

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

artículo científico publicado en 2009

The Genomic Standards Consortium

artículo científico publicado en 2011

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

artículo científico publicado en 2012

The MG-RAST API explorer: an on-ramp for RESTful query composition

scientific article published on 08 November 2019

The Metagenomics RAST Server: A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes

article

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

artículo científico publicado en 2006

The RAST Server: rapid annotations using subsystems technology

artículo científico publicado en 2008

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

artículo científico publicado en 2009

The United States of America and scientific research

artículo científico publicado en 2010

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

artículo científico publicado en 2003

The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome

artículo científico publicado en 2014

The future of microbial metagenomics (or is ignorance bliss?).

artículo científico publicado en 2010

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

artículo científico publicado en 2006

The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity

artículo científico publicado en 2008

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

artículo científico publicado en 2008

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

artículo científico publicado en 2008

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

artículo científico publicado en 2005

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Toward unrestricted use of public genomic data:

artículo científico publicado en 2019

Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction

article

Unlocking the potential of metagenomics through replicated experimental design

artículo científico publicado en 2012

Using clouds for metagenomics: A case study

article published in 2009

Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes

artículo científico publicado en 2010

Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter

artículo científico publicado en 2006

Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique

artículo científico publicado en 2003

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes

artículo científico publicado en 2006

Lista de obras de Folker Meyer

A Predator Unmasked: Life Cycle of Bdellovibrio bacteriovorus from a Genomic Perspective

A metagenomics portal for a democratized sequencing world

A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.

A scalable data analysis platform for metagenomics

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud

Annotation of bacterial and archaeal genomes: improving accuracy and consistency

BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae)

BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

Bioinformatics support for high-throughput proteomics

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

COVID-19 pandemic reveals the peril of ignoring metadata standards

Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.

Comparing expression level-dependent features in codon usage with protein abundance: an analysis of 'predictive proteomics'.

Complete genome sequence and analysis of Wolinella succinogenes

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

Complete genome sequence of the myxobacterium Sorangium cellulosum

Conceptualizing a Genomics Software Institute (GSI)

Connecting genotype to phenotype in the era of high-throughput sequencing.

Consent insufficient for data release-Response

Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression

Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula

Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses

Development of joint application strategies for two microbial gene finders

Draft genome sequence of Achromobacter piechaudii strain HLE

Draft genome sequence of Agrobacterium albertimagni strain AOL15

Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071).

EMMA: a platform for consistent storage and efficient analysis of microarray data

FIGfams: yet another set of protein families

Federation in genomics pipelines: techniques and challenges.

Finding novel genes in bacterial communities isolated from the environment

From genomics to metagenomics

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

GISMO--gene identification using a support vector machine for ORF classification

GenDB--an open source genome annotation system for prokaryote genomes

Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

Genomic standards consortium projects

Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak

KBase: The United States Department of Energy Systems Biology Knowledgebase

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon

MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

Maternal activation of gap genes in the hover fly Episyrphus

Maternal activation of gap genes in the hover fly Episyrphus.

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010

Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel

Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling

Metagenomics - a guide from sampling to data analysis

Metagenomics: A foundling finds its feet

Metazen - metadata capture for metagenomes

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

REGANOR

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

The Genomic Standards Consortium

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

The MG-RAST API explorer: an on-ramp for RESTful query composition

The Metagenomics RAST Server: A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes