Lista de obras - Deyou Zheng - Dominio Público Uruguay

1H, 13C and 15N resonance assignments for methionine sulfoxide reductase B from Bacillus subtilis

artículo científico publicado en 2003

A PCR method for typing B-L beta II family (class II MHC) alleles in broiler chickens

artículo científico publicado en 1999

A comprehensive spatial-temporal transcriptomic analysis of differentiating nascent mouse lens epithelial and fiber cells

artículo científico publicado en 2018

A computational approach for identifying pseudogenes in the ENCODE regions

artículo científico publicado en 2006

A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation

artículo científico publicado en 2012

A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1.

artículo científico publicado en 2011

Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance

artículo científico publicado en 2017

Allele-biased expression in differentiating human neurons: implications for neuropsychiatric disorders

artículo científico publicado en 2012

Alternative transcription initiation leads to expression of a novel ALK isoform in cancer

artículo científico publicado en 2015

An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting

artículo científico publicado en 2013

Androgen receptor signaling regulates DNA repair in prostate cancers

artículo científico publicado en 2013

Architectural niche organization by LHX2 is linked to hair follicle stem cell function

scientific journal article

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

artículo científico publicado en 2006

Asymmetric histone modifications between the original and derived loci of human segmental duplications

artículo científico publicado en 2008

Author Correction: REST regulates the cell cycle for cardiac development and regeneration

artículo científico publicado en 2018

Automated protein fold determination using a minimal NMR constraint strategy

artículo científico publicado en 2003

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells

artículo científico publicado en 2017

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

artículo científico publicado en 2015

Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis

artículo científico publicado en 2017

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes

artículo científico publicado en 2022

Characterization of human pseudogene-derived non-coding RNAs for functional potential

artículo científico publicado en 2014

Characterization of the past and current duplication activities in the human 22q11.2 region

artículo científico publicado en 2011

Chromatin features, RNA polymerase II and the comparative expression of lens genes encoding crystallins, transcription factors, and autophagy mediators

artículo científico publicado en 2015

Cistrome analysis of YY1 uncovers a regulatory axis of YY1:BRD2/4-PFKP during tumorigenesis of advanced prostate cancer

artículo científico publicado en 2021

Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.

artículo científico publicado en 2015

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

artículo científico publicado en 2009

Comparison of REST cistromes across human cell types reveals common and context-specific functions

artículo científico publicado en 2014

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

artículo científico publicado en 2009

Comprehensive transcriptional landscape of aging mouse liver

artículo científico publicado en 2015

Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions

artículo científico publicado en 2010

Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development

artículo científico publicado en 2013

DNA methylation is developmentally regulated for genes essential for cardiogenesis

artículo científico publicado en 2014

Deletion size analysis of 1680 22q11.2DS subjects identifies a new recombination hotspot on chromosome 22q11.2.

artículo científico publicado en 2018

Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells

artículo científico publicado en 2011

Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation

artículo científico publicado en 2009

Disruption of Interneuron Neurogenesis in Premature Newborns and Reversal with Estrogen Treatment

artículo científico publicado en 2017

Distinct factors control histone variant H3.3 localization at specific genomic regions

artículo científico publicado en 2010

Divergence and rewiring of regulatory networks for neural development between human and other species

artículo científico publicado en 2016

Down-regulation of Skp2 expression inhibits invasion and lung metastasis in osteosarcoma

scientific article published in Scientific Reports

Drosophila RpS12 controls translation, growth, and cell competition through Xrp1

artículo científico publicado en 2019

ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis

artículo científico publicado en 2017

ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss

artículo científico publicado en 2013

ETV1 is a lineage survival factor that cooperates with KIT in gastrointestinal stromal tumours

artículo científico publicado en 2010

Endocardial cells form the coronary arteries by angiogenesis through myocardial-endocardial VEGF signaling

artículo científico publicado en 2012

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons

artículo científico publicado en 2018

Epigenetic Perturbations by Arg882-Mutated DNMT3A Potentiate Aberrant Stem Cell Gene-Expression Program and Acute Leukemia Development

artículo científico publicado en 2016

Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses

scientific article published on 17 February 2017

Evolutionary Origins of Pax6 Control of Crystallin Genes

artículo científico publicado en 2017

FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST).

artículo científico publicado en 2017

Faculty of 1000 evaluation for Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

GREB1 amplifies androgen receptor output in prostate cancer and contributes to antiandrogen resistance

Gene duplication in the epigenomic era: Roles of chromatin modifications

article

Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage

artículo científico publicado en 2011

Glucocorticoid receptor confers resistance to antiandrogens by bypassing androgen receptor blockade

artículo científico publicado en 2013

Heat shock alters the expression of schizophrenia and autism candidate genes in an induced pluripotent stem cell model of the human telencephalon

artículo científico publicado en 2014

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells

artículo científico publicado en 2013

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

artículo científico publicado en 2007

Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA.

artículo científico publicado en 2014

Identification of in vivo DNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during forebrain and lens development

artículo científico publicado en 2015

In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice

artículo científico publicado en 2017

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

artículo científico publicado en 2007

Integrated pseudogene annotation for human chromosome 22: evidence for transcription

artículo científico publicado en 2005

Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

artículo científico publicado en 2016

In vivo transcriptional governance of hair follicle stem cells by canonical Wnt regulators

scientific article published on 26 January 2014

Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis

artículo científico publicado en 2016

MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program

artículo científico publicado en 2016

Mammalian TBX1 preferentially binds and regulates downstream targets via a tandem T-site repeat

artículo científico publicado en 2014

Metabolite differences between glutamate carboxypeptidase II gene knockout mice and their wild-type littermates after traumatic brain injury: a 7-tesla H-MRS study

article

MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del.

artículo científico publicado en 2015

Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

artículo científico publicado en 2021

N-myc regulates growth and fiber cell differentiation in lens development

artículo científico

NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices

scientific article published on 11 May 2020

NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold

artículo científico publicado en 2002

Nfatc1 orchestrates aging in hair follicle stem cells

artículo científico publicado en 2013

Non-CpG methylation by DNMT3B facilitates REST binding and gene silencing in developing mouse hearts

artículo científico publicado en 2016

PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs

artículo científico publicado en 2016

PRC1 Fine-tunes Gene Repression and Activation to Safeguard Skin Development and Stem Cell Specification

artículo científico publicado en 2018

PRC1 preserves epidermal tissue integrity independently of PRC2

scientific article published on 19 December 2018

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.

artículo científico publicado en 2014

Pangolin genomes and the evolution of mammalian scales and immunity

artículo científico publicado en 2016

Pax6 associates with H3K4-specific histone methyltransferases Mll1, Mll2, and Set1a and regulates H3K4 methylation at promoters and enhancers

artículo científico publicado en 2016

Pax6 interactions with chromatin and identification of its novel direct target genes in lens and forebrain

artículo científico publicado en 2013

Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice

artículo científico publicado en 2015

Polycomb-Mediated Repression and Sonic Hedgehog Signaling Interact to Regulate Merkel Cell Specification during Skin Development

artículo científico publicado en 2016

Profiling RE1/REST-mediated histone modifications in the human genome

artículo científico publicado en 2009

Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers

scientific article published on 22 October 2018

Proton sensitivity of ASIC1 appeared with the rise of fishes by changes of residues in the region that follows TM1 in the ectodomain of the channel

PseudoPipe: an automated pseudogene identification pipeline

artículo científico publicado en 2006

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

artículo científico publicado en 2007

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

artículo científico publicado en 2007

REST and CoREST modulate neuronal subtype specification, maturation and maintenance

artículo científico publicado en 2009

REST regulates the cell cycle for cardiac development and regeneration.

artículo científico publicado en 2017

RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders

artículo científico publicado en 2011

RNA-seq Identification of RACGAP1 as a Metastatic Driver in Uterine Carcinosarcoma

artículo científico publicado en 2016

Reduced CYFIP1 in Human Neural Progenitors Results in Dysregulation of Schizophrenia and Epilepsy Gene Networks

artículo científico publicado en 2016

Reduced dosage of β-catenin provides significant rescue of cardiac outflow tract anomalies in a Tbx1 conditional null mouse model of 22q11.2 deletion syndrome.

artículo científico publicado en 2017

Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.

artículo científico publicado en 2017

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis

SOX9: a stem cell transcriptional regulator of secreted niche signaling factors

artículo científico publicado en 2014

SPINE 2: a system for collaborative structural proteomics within a federated database framework

artículo científico publicado en 2003

Selective inhibition of EZH2 and EZH1 enzymatic activity by a small molecule suppresses MLL-rearranged leukemia

artículo científico publicado en 2014

Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development

artículo científico publicado en 2015

Six3 and Six6 Are Jointly Required for the Maintenance of Multipotent Retinal Progenitors through Both Positive and Negative Regulation

Small RNAs originated from pseudogenes: cis- or trans-acting?

artículo científico publicado en 2009

TOUCHSTONEX: protein structure prediction with sparse NMR data.

artículo científico publicado en 2003

Tbx1 is required autonomously for cell survival and fate in the pharyngeal core mesoderm to form the muscles of mastication

artículo científico publicado en 2014

Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression.

artículo científico publicado en 2018

Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis

artículo científico publicado en 2022

The Chromatin Remodeler BPTF Activates a Stemness Gene-Expression Program Essential for the Maintenance of Adult Hematopoietic Stem Cells

artículo científico publicado en 2018

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci

artículo científico publicado en 2007

The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity

artículo científico publicado en 2022

The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease

artículo científico publicado en 2009

The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?

article

The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress

artículo científico publicado en 2013

Three new MHC haplotypes in broiler breeder chickens

artículo científico publicado en 2001

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability

artículo científico publicado en 2005

Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

artículo científico publicado en 2017

Transcriptome comparison of human neurons generated using induced pluripotent stem cells derived from dental pulp and skin fibroblasts

artículo científico publicado en 2013

Transcriptomics analysis of iPSC-derived neurons and modeling of neuropsychiatric disorders.

artículo científico publicado en 2015

Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic viruses

artículo científico publicado en 2022

Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data

artículo científico publicado en 2004

Variant discovery and breakpoint region prediction for studying the human 22q11.2 deletion using BAC clone and whole genome sequencing analysis

artículo científico publicado en 2016

What is a gene, post-ENCODE? History and updated definition

artículo científico publicado en 2007

ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer

artículo científico publicado en 2018

ZMYND11-MBTD1 induces leukemogenesis through hijacking NuA4/TIP60 acetyltransferase complex and a PWWP-mediated chromatin association mechanism

artículo científico publicado en 2021

ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin

artículo científico publicado en 2015

amplifies androgen receptor output in human prostate cancer and contributes to antiandrogen resistance

β-catenin promoter ChIP-chip reveals potential schizophrenia and bipolar disorder gene network

artículo científico publicado en 2010

Lista de obras de Deyou Zheng

1H, 13C and 15N resonance assignments for methionine sulfoxide reductase B from Bacillus subtilis

A PCR method for typing B-L beta II family (class II MHC) alleles in broiler chickens

A comprehensive spatial-temporal transcriptomic analysis of differentiating nascent mouse lens epithelial and fiber cells

A computational approach for identifying pseudogenes in the ENCODE regions

A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation

A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1.

Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance

Allele-biased expression in differentiating human neurons: implications for neuropsychiatric disorders

Alternative transcription initiation leads to expression of a novel ALK isoform in cancer

An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting

Androgen receptor signaling regulates DNA repair in prostate cancers

Architectural niche organization by LHX2 is linked to hair follicle stem cell function

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

Asymmetric histone modifications between the original and derived loci of human segmental duplications

Author Correction: REST regulates the cell cycle for cardiac development and regeneration

Automated protein fold determination using a minimal NMR constraint strategy

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes

Characterization of human pseudogene-derived non-coding RNAs for functional potential

Characterization of the past and current duplication activities in the human 22q11.2 region

Chromatin features, RNA polymerase II and the comparative expression of lens genes encoding crystallins, transcription factors, and autophagy mediators

Cistrome analysis of YY1 uncovers a regulatory axis of YY1:BRD2/4-PFKP during tumorigenesis of advanced prostate cancer

Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

Comparison of REST cistromes across human cell types reveals common and context-specific functions

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

Comprehensive transcriptional landscape of aging mouse liver

Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions

Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development

DNA methylation is developmentally regulated for genes essential for cardiogenesis

Deletion size analysis of 1680 22q11.2DS subjects identifies a new recombination hotspot on chromosome 22q11.2.

Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells

Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation

Disruption of Interneuron Neurogenesis in Premature Newborns and Reversal with Estrogen Treatment

Distinct factors control histone variant H3.3 localization at specific genomic regions

Divergence and rewiring of regulatory networks for neural development between human and other species

Down-regulation of Skp2 expression inhibits invasion and lung metastasis in osteosarcoma

Drosophila RpS12 controls translation, growth, and cell competition through Xrp1

ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis

ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss

ETV1 is a lineage survival factor that cooperates with KIT in gastrointestinal stromal tumours

Endocardial cells form the coronary arteries by angiogenesis through myocardial-endocardial VEGF signaling

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons

Epigenetic Perturbations by Arg882-Mutated DNMT3A Potentiate Aberrant Stem Cell Gene-Expression Program and Acute Leukemia Development

Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses

Evolutionary Origins of Pax6 Control of Crystallin Genes

FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST).

Faculty of 1000 evaluation for Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

GREB1 amplifies androgen receptor output in prostate cancer and contributes to antiandrogen resistance

Gene duplication in the epigenomic era: Roles of chromatin modifications

Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage

Glucocorticoid receptor confers resistance to antiandrogens by bypassing androgen receptor blockade

Heat shock alters the expression of schizophrenia and autism candidate genes in an induced pluripotent stem cell model of the human telencephalon

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA.

Identification of in vivo DNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during forebrain and lens development

In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

Integrated pseudogene annotation for human chromosome 22: evidence for transcription

Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

In vivo transcriptional governance of hair follicle stem cells by canonical Wnt regulators

Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis

MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program

Mammalian TBX1 preferentially binds and regulates downstream targets via a tandem T-site repeat

Metabolite differences between glutamate carboxypeptidase II gene knockout mice and their wild-type littermates after traumatic brain injury: a 7-tesla H-MRS study

MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del.

Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

N-myc regulates growth and fiber cell differentiation in lens development

NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices

NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold

Nfatc1 orchestrates aging in hair follicle stem cells

Non-CpG methylation by DNMT3B facilitates REST binding and gene silencing in developing mouse hearts

PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs

PRC1 Fine-tunes Gene Repression and Activation to Safeguard Skin Development and Stem Cell Specification

PRC1 preserves epidermal tissue integrity independently of PRC2

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.