Lista de obras - Jörg Hackermüller - Dominio Público Uruguay

A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation

artículo científico publicado en 2021

A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus

artículo científico publicado en 2014

A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis.

artículo científico publicado en 2017

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

artículo científico publicado en 2014

A translational silencing function of MCPIP1/Regnase-1 specified by the target site context.

artículo científico publicado en 2018

Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop

artículo científico publicado en 2016

Alzheimer-related genes show accelerated evolution

artículo científico publicado en 2020

Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop.

artículo científico publicado en 2017

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA.

artículo científico publicado en 2018

Bioinformatics for RNomics

artículo científico publicado en 2011

CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases

artículo científico publicado en 2012

CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era

artículo científico publicado en 2014

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

artículo científico publicado en 2014

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

scientific article published on 13 September 2019

Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies

artículo científico publicado en 2017

Computational RNomics of drosophilids

artículo científico publicado en 2007

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

artículo científico publicado en 2011

Detection of differentially expressed segments in tiling array data

artículo científico publicado en 2012

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

artículo científico publicado en 2008

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci†.

artículo científico publicado en 2015

Duplicated RNA genes in teleost fish genomes

artículo científico publicado en 2008

Evolution of vault RNAs.

artículo científico publicado en 2009

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

artículo científico publicado en 2009

Framework for the quality assurance of 'omics technologies considering GLP requirements.

artículo científico publicado en 2017

From the exposome to mechanistic understanding of chemical-induced adverse effects

artículo científico publicado en 2016

Generation of IL-8 and IL-9 producing CD4⁺ T cells is affected by Th17 polarizing conditions and AHR ligands

artículo científico publicado en 2014

HLA-DRB10401 and HLA-DRB10408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis

artículo científico publicado en 2008

HLA-DRB1∗0401 and HLA-DRB1∗0408 Are Strongly Associated with the Development of Antibodies against Interferon-β Therapy in Multiple Sclerosis

artículo científico publicado en 2008

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

artículo científico publicado en 2007

Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer

artículo científico publicado en 2007

Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes

artículo científico publicado en 2014

Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications

artículo científico publicado en 2017

MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma

artículo científico publicado en 2012

Mouse Retinal Organoid Growth and Maintenance in Longer-Term Culture

artículo científico publicado en 2021

NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences

artículo científico publicado en 2008

Prospects and challenges of multi-omics data integration in toxicology

artículo científico publicado en 2020

Requirements and Perspectives for Integrating Metabolomics with other Omics Data

Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation

artículo científico publicado en 2018

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer

artículo científico

Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking

artículo científico publicado en 2018

Structured RNAs in the ENCODE selected regions of the human genome

artículo científico publicado en 2007

The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment

artículo científico publicado en 2022

The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook.

artículo científico publicado en 2017

The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans

artículo científico publicado en 2017

The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: a quantitative model

artículo científico publicado en 2005

The primary transcriptome of the major human pathogen Helicobacter pylori

artículo científico publicado en 2010

Thermodynamics of RNA-RNA binding

artículo científico publicado en 2006

Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species

scientific article published on 31 October 2019

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

artículo científico publicado en 2004

uap: reproducible and robust HTS data analysis

scientific article published on 12 December 2019

Lista de obras de Jörg Hackermüller

A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation

A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus

A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis.

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

A translational silencing function of MCPIP1/Regnase-1 specified by the target site context.

Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop

Alzheimer-related genes show accelerated evolution

Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop.

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA.

Bioinformatics for RNomics

CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases

CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies

Computational RNomics of drosophilids

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Detection of differentially expressed segments in tiling array data

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci†.

Duplicated RNA genes in teleost fish genomes

Evolution of vault RNAs.

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

Framework for the quality assurance of 'omics technologies considering GLP requirements.

From the exposome to mechanistic understanding of chemical-induced adverse effects

Generation of IL-8 and IL-9 producing CD4⁺ T cells is affected by Th17 polarizing conditions and AHR ligands

HLA-DRB1*0401 and HLA-DRB1*0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis

HLA-DRB1∗0401 and HLA-DRB1∗0408 Are Strongly Associated with the Development of Antibodies against Interferon-β Therapy in Multiple Sclerosis

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer

Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes

Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications

MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma

Mouse Retinal Organoid Growth and Maintenance in Longer-Term Culture

NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences

Prospects and challenges of multi-omics data integration in toxicology

Requirements and Perspectives for Integrating Metabolomics with other Omics Data

Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer

Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking

Structured RNAs in the ENCODE selected regions of the human genome

The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment

The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook.

The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans

The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: a quantitative model

The primary transcriptome of the major human pathogen Helicobacter pylori

Thermodynamics of RNA-RNA binding

Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

uap: reproducible and robust HTS data analysis

HLA-DRB10401 and HLA-DRB10408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis