Lista de obras - Kevin Burrage - Dominio Público Uruguay

'Extremotaxis': computing with a bacterial-inspired algorithm

artículo científico publicado en 2008

A Bayesian network model of proteins' association with promyelocytic leukemia (PML) nuclear bodies

artículo científico publicado en 2010

A Crank--Nicolson ADI Spectral Method for a Two-Dimensional Riesz Space Fractional Nonlinear Reaction-Diffusion Equation

A higher-order numerical framework for stochastic simulation of chemical reaction systems.

artículo científico publicado en 2012

A multiscale investigation of repolarization variability and its role in cardiac arrhythmogenesis

artículo científico publicado en 2011

A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable

scientific article published on 11 November 2019

Accurate Stationary Densities with Partitioned Numerical Methods for Stochastic Differential Equations

article by Kevin Burrage & Grant D. Lythe published January 2009 in SIAM Journal on Numerical Analysis

Advanced computing for systems biology.

artículo científico publicado en 2006

Analysis of sloppiness in model simulations: Unveiling parameter uncertainty when mathematical models are fitted to data

Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology

artículo científico publicado en 2012

Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue

artículo científico publicado en 2014

Bayes-optimal chemotaxis

artículo científico publicado en 2010

Bayesian model predicts the response of axons to molecular gradients

artículo científico publicado en 2009

Binomial leap methods for simulating stochastic chemical kinetics

artículo científico publicado en 2004

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics

artículo científico publicado en 2007

Bistability and switching in the lysis/lysogeny genetic regulatory network of bacteriophage lambda.

artículo científico publicado en 2004

Bridging experiments, models and simulations: an integrative approach to validation in computational cardiac electrophysiology

artículo científico publicado en 2012

Comparison of continuous and discrete stochastic ion channel models

artículo científico publicado en 2011

Determination of somatic and cancer stem cell self-renewing symmetric division rate using sphere assays

artículo científico publicado en 2011

Effective numerical methods for simulating diffusion on a spherical surface in three dimensions

artículo científico publicado en 2022

Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation

artículo científico publicado en 2008

Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method.

artículo científico publicado en 2014

Exploring synonymous codon usage preferences of disulfide-bonded and non-disulfide bonded cysteines in the E. coli genome.

artículo científico publicado en 2006

Exploring the parameter space of a rabbit ventricular action potential model to investigate the effect of variation on action potential and calcium transients

artículo científico publicado en 2010

Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Computing on GPU with CUDA and ELLPACK-R Sparse Format ⬇️

artículo científico publicado el 1 de mayo de 2012

Fast stochastic simulation of biochemical reaction systems by alternative formulations of the chemical Langevin equation

artículo científico publicado en 2010

Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise

artículo científico publicado en 2008

High-throughput cardiac science on the Grid

artículo científico publicado en 2010

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome

article

Identifying optimal lipid raft characteristics required to promote nanoscale protein-protein interactions on the plasma membrane

artículo científico publicado en 2006

In Vivo and In Silico Investigation Into Mechanisms of Frequency Dependence of Repolarization Alternans in Human Ventricular Cardiomyocytes

artículo científico publicado en 2015

Look before you leap: A confidence-based method for selecting species criticality while avoiding negative populations in τ-leaping ⬇️

artículo científico publicado el 28 de febrero de 2011

Mathematical modelling of gas production and compositional shift of a CSG (coal seam gas) field: Local model development

article

Modeling ion channel dynamics through reflected stochastic differential equations

artículo científico publicado en 2012

Modelling and simulation techniques for membrane biology.

artículo científico publicado en 2007

Multi-scale approach for simulating time-delay biochemical reaction systems

artículo científico publicado en 2015

Numerical Methods for Second‐Order Stochastic Differential Equations

article by Kevin Burrage et al published January 2007 in SIAM Journal on Scientific and Statistical Computing

On the Order of the Fractional Laplacian in Determining the Spatio-Temporal Evolution of a Space-Fractional Model of Cardiac Electrophysiology

artículo científico publicado en 2015

Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation

artículo científico publicado en 2006

Phenomenological modeling of cell-to-cell and beat-to-beat variability in isolated Guinea Pig ventricular myocytes

artículo científico publicado en 2010

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation

artículo científico publicado en 2014

Post-transcriptional regulation in the nucleus and cytoplasm: study of mean time to threshold (MTT) and narrow escape problem.

artículo científico publicado en 2014

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

artículo científico publicado en 2007

Predicting residue-wise contact orders in proteins by support vector regression

artículo científico publicado en 2006

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

artículo científico publicado en 2006

Prediction of protein solvent accessibility using support vector machines.

artículo científico publicado en 2002

Probability distributed time delays: integrating spatial effects into temporal models

artículo científico publicado en 2010

Protein contact prediction using patterns of correlation

artículo científico publicado en 2004

Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle

artículo científico publicado en 2014

Simulated maximum likelihood method for estimating kinetic rates in gene expression

artículo científico publicado en 2006

Simulation methods with extended stability for stiff biochemical Kinetics.

artículo científico publicado en 2010

Stability and efficiency properties of implicit Runge-Kutta methods ⬇️

1978 doctoral thesis by Kevin Burrage at University of Auckland

Stochastic approaches for modelling in vivo reactions.

artículo científico publicado en 2004

Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation

artículo científico publicado en 2008

Stochastic dynamics of interacting haematopoietic stem cell niche lineages

artículo científico publicado en 2014

Stochastic simulation in systems biology

artículo científico publicado en 2014

Studying the role of lipid rafts on protein receptor bindings with cellular automata

scientific article published on 01 May 2013

The systems biology approach to drug development: application to toxicity assessment of cardiac drugs

scientific article published on 02 June 2010

Unlocking data sets by calibrating populations of models to data density: A study in atrial electrophysiology

artículo científico publicado en 2018

Using the canonical modelling approach to simplify the simulation of function in functional-structural plant models

artículo científico publicado en 2005

Variability in cardiac electrophysiology: Using experimentally-calibrated populations of models to move beyond the single virtual physiological human paradigm

artículo científico publicado en 2015

mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: a population-based simulation study

artículo científico publicado en 2013

Lista de obras de Kevin Burrage

'Extremotaxis': computing with a bacterial-inspired algorithm

A Bayesian network model of proteins' association with promyelocytic leukemia (PML) nuclear bodies

A Crank--Nicolson ADI Spectral Method for a Two-Dimensional Riesz Space Fractional Nonlinear Reaction-Diffusion Equation

A higher-order numerical framework for stochastic simulation of chemical reaction systems.

A multiscale investigation of repolarization variability and its role in cardiac arrhythmogenesis

A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable

Accurate Stationary Densities with Partitioned Numerical Methods for Stochastic Differential Equations

Advanced computing for systems biology.

Analysis of sloppiness in model simulations: Unveiling parameter uncertainty when mathematical models are fitted to data

Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology

Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue

Bayes-optimal chemotaxis

Bayesian model predicts the response of axons to molecular gradients

Binomial leap methods for simulating stochastic chemical kinetics

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics

Bistability and switching in the lysis/lysogeny genetic regulatory network of bacteriophage lambda.

Bridging experiments, models and simulations: an integrative approach to validation in computational cardiac electrophysiology

Comparison of continuous and discrete stochastic ion channel models

Determination of somatic and cancer stem cell self-renewing symmetric division rate using sphere assays

Effective numerical methods for simulating diffusion on a spherical surface in three dimensions

Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation

Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method.

Exploring synonymous codon usage preferences of disulfide-bonded and non-disulfide bonded cysteines in the E. coli genome.

Exploring the parameter space of a rabbit ventricular action potential model to investigate the effect of variation on action potential and calcium transients

Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Computing on GPU with CUDA and ELLPACK-R Sparse Format ⬇️

Fast stochastic simulation of biochemical reaction systems by alternative formulations of the chemical Langevin equation

Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise

High-throughput cardiac science on the Grid

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome

Identifying optimal lipid raft characteristics required to promote nanoscale protein-protein interactions on the plasma membrane

In Vivo and In Silico Investigation Into Mechanisms of Frequency Dependence of Repolarization Alternans in Human Ventricular Cardiomyocytes

Look before you leap: A confidence-based method for selecting species criticality while avoiding negative populations in τ-leaping ⬇️

Mathematical modelling of gas production and compositional shift of a CSG (coal seam gas) field: Local model development

Modeling ion channel dynamics through reflected stochastic differential equations

Modelling and simulation techniques for membrane biology.

Multi-scale approach for simulating time-delay biochemical reaction systems

Numerical Methods for Second‐Order Stochastic Differential Equations

On the Order of the Fractional Laplacian in Determining the Spatio-Temporal Evolution of a Space-Fractional Model of Cardiac Electrophysiology

Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation

Phenomenological modeling of cell-to-cell and beat-to-beat variability in isolated Guinea Pig ventricular myocytes

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation

Post-transcriptional regulation in the nucleus and cytoplasm: study of mean time to threshold (MTT) and narrow escape problem.

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

Predicting residue-wise contact orders in proteins by support vector regression

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

Prediction of protein solvent accessibility using support vector machines.

Probability distributed time delays: integrating spatial effects into temporal models

Protein contact prediction using patterns of correlation

Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle

Simulated maximum likelihood method for estimating kinetic rates in gene expression

Simulation methods with extended stability for stiff biochemical Kinetics.

Stability and efficiency properties of implicit Runge-Kutta methods ⬇️

Stochastic approaches for modelling in vivo reactions.

Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation

Stochastic dynamics of interacting haematopoietic stem cell niche lineages

Stochastic simulation in systems biology

Studying the role of lipid rafts on protein receptor bindings with cellular automata

The systems biology approach to drug development: application to toxicity assessment of cardiac drugs

Unlocking data sets by calibrating populations of models to data density: A study in atrial electrophysiology

Using the canonical modelling approach to simplify the simulation of function in functional-structural plant models

Variability in cardiac electrophysiology: Using experimentally-calibrated populations of models to move beyond the single virtual physiological human paradigm

mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: a population-based simulation study