Lista de obras - Simon R Harris - Dominio Público Uruguay

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

artículo científico publicado en 2013

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

artículo científico publicado en 2015

A high-resolution view of genome-wide pneumococcal transformation

artículo científico publicado en 2012

A shared population of epidemic methicillin-resistant Staphylococcus aureus 15 circulates in humans and companion animals.

artículo científico publicado en 2014

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

artículo científico publicado en 2012

Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae

artículo científico publicado en 2020

An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles ‘fungal’ icosalide antibiotics

artículo científico publicado en 2019

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

artículo científico publicado en 2012

Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

artículo científico publicado en 2019

Author Correction: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

artículo científico publicado en 2019

Bacterial genomes in epidemiology--present and future.

artículo científico publicado en 2013

BamView: visualizing and interpretation of next-generation sequencing read alignments

artículo científico publicado en 2013

Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission

artículo científico publicado en 2015

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.

artículo científico publicado en 2013

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

artículo científico publicado en 2009

Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome

artículo científico publicado en 2015

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

artículo científico publicado en 2018

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes

artículo científico publicado en 2014

Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru.

artículo científico publicado en 2017

Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa

artículo científico publicado en 2015

Dense genomic sampling identifies highways of pneumococcal recombination

artículo científico publicado en 2014

Detection of recombination events in bacterial genomes from large population samples

artículo científico publicado en 2011

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

artículo científico publicado en 2016

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

artículo científico publicado en 2013

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

artículo científico publicado en 2017

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

artículo científico publicado en 2015

Emergence and genomic diversification of a virulent serogroup W:ST-2881(CC175) Neisseria meningitidis clone in the African meningitis belt

artículo científico publicado en 2017

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

artículo científico publicado en 2012

Emergence of a new epidemic Neisseria meningitidis serogroup A Clone in the African meningitis belt: high-resolution picture of genomic changes that mediate immune evasion.

artículo científico publicado en 2014

Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

artículo científico publicado en 2016

Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus.

artículo científico publicado en 2015

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread

scientific article published on 29 July 2019

Erratum for Kulohoma et al., Comparative genomic analysis of meningitis- and bacteremia-causing pneumococci identifies a common core genome

artículo científico publicado en 2015

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

artículo científico publicado en 2017

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

scientific article published on 03 September 2019

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

artículo científico publicado en 2018

Evidence for several waves of global transmission in the seventh cholera pandemic

artículo científico publicado en 2011

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

artículo científico publicado en 2014

Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent

scientific article published on 26 November 2019

Evolution and transmission of drug-resistant tuberculosis in a Russian population

artículo científico publicado en 2014

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

artículo científico publicado en 2017

Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system.

artículo científico publicado en 2015

Fast and flexible bacterial genomic epidemiology with PopPUNK

artículo científico publicado en 2019

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.

artículo científico publicado en 2013

Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach

artículo científico publicado en 2012

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

scientific article published on 22 November 2019

Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae

scientific article published on 11 October 2019

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar

artículo científico publicado en 2013

Genome sequence of the zoonotic pathogen Chlamydophila psittaci

scientific article published on 23 December 2010

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer

artículo científico publicado en 2012

Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

artículo científico publicado en 2015

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

artículo científico publicado en 2013

Genomic Analysis and Comparison of Two Gonorrhea Outbreaks

scientific article published on 28 June 2016

Genomic Dissection of an Icelandic Epidemic of Respiratory Disease in Horses and Associated Zoonotic Cases

artículo científico publicado en 2017

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

artículo científico publicado en 2009

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

scientific article published on 12 June 2019

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

artículo científico publicado en 2014

Global and regional dissemination and evolution of Burkholderia pseudomallei

artículo científico publicado en 2017

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

artículo científico publicado en 2016

Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution

artículo científico publicado en 2014

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

artículo científico publicado en 2013

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

artículo científico publicado en 2017

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

artículo científico publicado en 2015

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

artículo científico publicado en 2012

Investigating stagnation in morphological phylogenetics using consensus data

artículo científico publicado en 2007

Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon

artículo científico publicado en 2015

Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.

artículo científico publicado en 2016

Microevolution of extensively drug-resistant tuberculosis in Russia

artículo científico publicado en 2012

Optimal enzymes for amplifying sequencing libraries

artículo científico publicado en 2011

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

artículo científico publicado en 2013

Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic

artículo científico publicado en 2016

Parallel independent evolution of pathogenicity within the genus Yersinia

artículo científico publicado en 2014

Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis

artículo científico publicado en 2016

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

artículo científico publicado en 2015

Rapid Pneumococcal Evolution in Response to Clinical Interventions ⬇️

artículo científico publicado el 28 de enero de 2011

Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology

artículo científico publicado en 2013

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

artículo científico publicado en 2014

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

artículo científico publicado en 2012

Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks

artículo científico publicado en 2013

Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule

artículo científico publicado en 2016

Reductive evolution of the mitochondrial processing peptidases of the unicellular parasites trichomonas vaginalis and giardia intestinalis

artículo científico publicado en 2008

Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae

artículo científico publicado en 2015

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

artículo científico publicado en 2016

Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa.

artículo científico publicado en 2015

Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2015

Spatiotemporal Co-existence of Two Mycobacterium ulcerans Clonal Complexes in the Offin River Valley of Ghana

artículo científico publicado en 2016

Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae

artículo científico publicado en 2012

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.

artículo científico publicado en 2017

The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity

artículo científico publicado en 2016

The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization

artículo científico publicado en 2010

The archaebacterial origin of eukaryotes

artículo científico publicado en 2008

The evolutionary path to extraintestinal pathogenic, drug-resistant Escherichia coli is marked by drastic reduction in detectable recombination within the core genome

artículo científico publicado en 2013

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex

artículo científico publicado en 2012

The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution

artículo científico publicado en 2012

The impact of antimicrobials on gonococcal evolution

scientific article published on 29 July 2019

The impact of recombination on dN/dS within recently emerged bacterial clones

artículo científico publicado en 2011

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

artículo científico publicado en 2005

Understanding pneumococcal serotype 1 biology through population genomic analysis

artículo científico publicado en 2016

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone

artículo científico publicado en 2014

Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC

artículo científico publicado en 2013

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

artículo científico publicado en 2012

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

artículo científico publicado en 2013

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study.

artículo científico publicado en 2012

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

artículo científico publicado en 2013

Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

artículo científico publicado en 2013

Zero tolerance for healthcare-associated MRSA bacteraemia: is it realistic?

artículo científico publicado en 2014

Lista de obras de Simon R Harris

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

A high-resolution view of genome-wide pneumococcal transformation

A shared population of epidemic methicillin-resistant Staphylococcus aureus 15 circulates in humans and companion animals.

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae

An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles ‘fungal’ icosalide antibiotics

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

Author Correction: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

Bacterial genomes in epidemiology--present and future.

BamView: visualizing and interpretation of next-generation sequencing read alignments

Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes

Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru.

Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa

Dense genomic sampling identifies highways of pneumococcal recombination

Detection of recombination events in bacterial genomes from large population samples

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

Emergence and genomic diversification of a virulent serogroup W:ST-2881(CC175) Neisseria meningitidis clone in the African meningitis belt

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

Emergence of a new epidemic Neisseria meningitidis serogroup A Clone in the African meningitis belt: high-resolution picture of genomic changes that mediate immune evasion.

Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus.

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread

Erratum for Kulohoma et al., Comparative genomic analysis of meningitis- and bacteremia-causing pneumococci identifies a common core genome

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

Evidence for several waves of global transmission in the seventh cholera pandemic

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent

Evolution and transmission of drug-resistant tuberculosis in a Russian population

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system.

Fast and flexible bacterial genomic epidemiology with PopPUNK

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.

Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar

Genome sequence of the zoonotic pathogen Chlamydophila psittaci

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer

Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

Genomic Analysis and Comparison of Two Gonorrhea Outbreaks

Genomic Dissection of an Icelandic Epidemic of Respiratory Disease in Horses and Associated Zoonotic Cases

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

Global and regional dissemination and evolution of Burkholderia pseudomallei

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

Investigating stagnation in morphological phylogenetics using consensus data

Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon

Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.

Microevolution of extensively drug-resistant tuberculosis in Russia

Optimal enzymes for amplifying sequencing libraries

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic

Parallel independent evolution of pathogenicity within the genus Yersinia

Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

Rapid Pneumococcal Evolution in Response to Clinical Interventions ⬇️

Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak