Lista de obras - Gautam Dantas - Dominio Público Uruguay

1H, 13C and 15N resonance assignments of URNdesign, a computationally redesigned RRM protein

artículo científico publicado en 2005

A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630

scientific article published on 02 July 2019

A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion

artículo científico publicado en 2010

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins

artículo científico publicado en 2003

Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut

artículo científico publicado en 2019

Antibiotic perturbation of the preterm infant gut microbiome and resistome

artículo científico publicado en 2016

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections

artículo científico publicado en 2021

Antibiotics and the developing infant gut microbiota and resistome

artículo científico publicado en 2015

Antibiotics and the resistant microbiome

artículo científico

Antimicrobial resistance in enteric bacteria: current state and next-generation solutions

artículo científico publicado en 2020

Assessment of the Urinary Microbiota of MSM Using Urine Culturomics Reveals a Diverse Microbial Environment

scientific article published on 10 September 2021

Bacteria subsisting on antibiotics

artículo científico publicado en 2008

Bacterial phylogeny structures soil resistomes across habitats

artículo científico publicado en 2014

Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes

artículo científico publicado en 2019

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes.

artículo científico publicado en 2018

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy

artículo científico publicado en 2018

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity

artículo científico publicado en 2018

Comparative Genomics of Borderline Oxacillin-Resistant Staphylococcus aureus Detected during a Pseudo-outbreak of Methicillin-Resistant S. aureus in a Neonatal Intensive Care Unit

artículo científico publicado en 2022

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.

artículo científico

Complex interactions between the microbiome and cancer immune therapy

artículo científico publicado en 2019

Context matters - the complex interplay between resistome genotypes and resistance phenotypes

artículo científico publicado en 2012

Contextual organismality: Beyond pattern to process in the emergence of organisms.

artículo científico publicado en 2016

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

artículo científico publicado en 2003

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

artículo científico publicado en 2021

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

artículo científico publicado en 2016

Discovery and Characterization of a Nitroreductase Capable of Conferring Bacterial Resistance to Chloramphenicol

artículo científico publicado en 2019

Draft Genome Sequence of a - and -Harboring Pseudomonas aeruginosa Clinical Isolate from Pakistan

artículo científico publicado en 2019

Draft Genome Sequence of a Salmonella enterica Serovar Typhi Strain Resistant to Fourth-Generation Cephalosporin and Fluoroquinolone Antibiotics

artículo científico publicado en 2017

Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10.

artículo científico publicado en 2017

Draft Genome Sequence of the blaOXA-436- and blaNDM-1-Harboring Shewanella putrefaciens SA70 Isolate

artículo científico publicado en 2017

Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria

artículo científico publicado en 2017

Ecological and Clinical Consequences of Antibiotic Subsistence by Environmental Microbes

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

artículo científico publicado en 2020

Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli

artículo científico publicado en 2022

Erratum: Gut resistome development in healthy twin pairs in the first year of life

artículo científico publicado en 2015

Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data

artículo científico publicado en 2016

Experimental approaches for defining functional roles of microbes in the human gut.

artículo científico publicado en 2013

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

artículo científico publicado en 2011

Functional Metagenomics to Study Antibiotic Resistance

artículo científico publicado en 2017

Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics

artículo científico publicado en 2015

Functional characterization of the antibiotic resistance reservoir in the human microflora

artículo científico publicado en 2009

Functional metagenomic investigations of the human intestinal microbiota

artículo científico publicado en 2011

Genomic and Metagenomic Approaches for Predictive Surveillance of Emerging Pathogens and Antibiotic Resistance

artículo científico publicado en 2019

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes

artículo científico publicado en 2016

Genomic characterization of emerging bacterial uropathogen Neisseria meningitidis misidentified as Neisseria gonorrhoeae by nucleic acid amplification testing

scientific article published on 11 November 2020

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

artículo científico publicado en 2015

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design

artículo científico publicado en 2007

High-resolution structural validation of the computational redesign of human U1A protein.

artículo científico publicado en 2006

How to Fight Back Against Antibiotic Resistance

scholarly article by Gautam Dantas & Morten Sommer published 2014 in American Scientist

Identification of Genes Conferring Tolerance to Lignocellulose-Derived Inhibitors by Functional Selections in Soil Metagenomes

artículo científico publicado en 2015

Impact of Amoxicillin-Clavulanate followed by Autologous Fecal Microbiota Transplantation on Fecal Microbiome Structure and Metabolic Potential

scientific article published on 21 November 2018

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

artículo científico publicado en 2014

In Silico Protein Evolution By Intelligent Design: Creating New and Improved Protein Structures ⬇️

doctoral thesis by Gautam Dantas, University of Washington, 2005

Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

artículo científico publicado en 2018

Insights into How Probiotics Colonize the Healthy Human Gut

artículo científico publicado en 2019

Interconnected microbiomes and resistomes in low-income human habitats

artículo científico publicado en 2016

KPC and NDM-1 genes in related Enterobacteriaceae strains and plasmids from Pakistan and the United States

artículo científico publicado en 2015

Lipid metabolism of phenol-tolerant strains for lignin bioconversion

article

Longitudinal analysis of microbial interaction between humans and the indoor environment

artículo científico publicado en 2014

Mechanism of High-Level Daptomycin Resistance in

artículo científico publicado en 2018

Microbiome Restoration by RBX2660 Does Not Preclude Recurrence of Multidrug-Resistant Urinary Tract Infection Following Subsequent Antibiotic Exposure: A Case Report

artículo científico publicado en 2020

Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution

artículo científico publicado en 2006

Missing Microbes: How the Overuse of Antibiotics is Fueling our Modern Plagues. By Martin J. Blaser. 288 pp. New York: Henry Holt and Company. 2014. $28.00 (cloth), $16.00 (paper), $14.99 (e-book)

article

Multi-omic elucidation of aromatic catabolism in adaptively evolved Rhodococcus opacus

artículo científico publicado en 2018

Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination

scientific article published on 09 January 2019

Multiscale Evolutionary Dynamics of Host-Associated Microbiomes

artículo científico publicado en 2018

Next-generation approaches to understand and combat the antibiotic resistome.

artículo científico publicado en 2017

Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs

artículo científico publicado en 2013

Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes

artículo científico publicado en 2013

Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

artículo científico publicado en 2019

Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes

artículo científico publicado en 2017

Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola

artículo científico publicado en 2018

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities

artículo científico publicado en 2020

Publisher Correction: Shared strategies for β-lactam catabolism in the soil microbiome

scientific article published on 01 February 2019

Semisynthetic Analogues of Anhydrotetracycline as Inhibitors of Tetracycline Destructase Enzymes

scientific article published on 05 March 2019

Sequencing-based methods and resources to study antimicrobial resistance

artículo científico publicado en 2019

Shared strategies for β-lactam catabolism in the soil microbiome

artículo científico publicado en 2018

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

artículo científico publicado en 2016

Simulating serial-target antibacterial drug synergies using flux balance analysis

Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces

artículo científico publicado en 2019

Staphylococcus aureus injection drug use-associated bloodstream infections are propagated by community outbreaks of diverse lineages

artículo científico publicado en 2021

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Novel Functionality of Resistance Enzymes.

artículo científico publicado en 2017

Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces

scientific article published on 20 July 2018

Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA.

artículo científico publicado en 2015

Synthesis of Polyazamacrocyclic Compounds via Modified Richman−Atkins Cyclization of β-Trimethylsilylethanesulfonamides

scientific article published on 01 April 2001

Tackling antibiotic resistance

artículo científico publicado en 2011

Tetracycline-inactivating enzymes from environmental, human commensal, and pathogenic bacteria cause broad-spectrum tetracycline resistance

artículo científico publicado en 2020

The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes

artículo científico publicado en 2015

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

artículo científico publicado en 2016

The gut microbiome defines social group membership in honey bee colonies

artículo científico publicado en 2020

The human microbiome harbors a diverse reservoir of antibiotic resistance genes

artículo científico publicado en 2010

The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography

artículo científico publicado en 2020

The rapid spread of carbapenem-resistant Enterobacteriaceae

artículo científico publicado en 2016

The shared antibiotic resistome of soil bacteria and human pathogens

artículo científico publicado en 2012

The yin and yang of bacterial resilience in the human gut microbiota

artículo científico publicado en 2014

Transcriptomic analysis illuminates genes involved in chlorophyll synthesis after nitrogen starvation in Acaryochloris sp. CCMEE 5410.

artículo científico publicado en 2016

Urinary tract colonization is enhanced by a plasmid that regulates uropathogenic Acinetobacter baumannii chromosomal genes

scientific article published on 24 June 2019

Lista de obras de Gautam Dantas

1H, 13C and 15N resonance assignments of URNdesign, a computationally redesigned RRM protein

A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630

A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins

Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut

Antibiotic perturbation of the preterm infant gut microbiome and resistome

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections

Antibiotics and the developing infant gut microbiota and resistome

Antibiotics and the resistant microbiome

Antimicrobial resistance in enteric bacteria: current state and next-generation solutions

Assessment of the Urinary Microbiota of MSM Using Urine Culturomics Reveals a Diverse Microbial Environment

Bacteria subsisting on antibiotics

Bacterial phylogeny structures soil resistomes across habitats

Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes.

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity

Comparative Genomics of Borderline Oxacillin-Resistant Staphylococcus aureus Detected during a Pseudo-outbreak of Methicillin-Resistant S. aureus in a Neonatal Intensive Care Unit

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.

Complex interactions between the microbiome and cancer immune therapy

Context matters - the complex interplay between resistome genotypes and resistance phenotypes

Contextual organismality: Beyond pattern to process in the emergence of organisms.

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

Discovery and Characterization of a Nitroreductase Capable of Conferring Bacterial Resistance to Chloramphenicol

Draft Genome Sequence of a - and -Harboring Pseudomonas aeruginosa Clinical Isolate from Pakistan

Draft Genome Sequence of a Salmonella enterica Serovar Typhi Strain Resistant to Fourth-Generation Cephalosporin and Fluoroquinolone Antibiotics

Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10.

Draft Genome Sequence of the blaOXA-436- and blaNDM-1-Harboring Shewanella putrefaciens SA70 Isolate

Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria

Ecological and Clinical Consequences of Antibiotic Subsistence by Environmental Microbes

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli

Erratum: Gut resistome development in healthy twin pairs in the first year of life

Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data

Experimental approaches for defining functional roles of microbes in the human gut.

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

Functional Metagenomics to Study Antibiotic Resistance

Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics

Functional characterization of the antibiotic resistance reservoir in the human microflora

Functional metagenomic investigations of the human intestinal microbiota

Genomic and Metagenomic Approaches for Predictive Surveillance of Emerging Pathogens and Antibiotic Resistance

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes

Genomic characterization of emerging bacterial uropathogen Neisseria meningitidis misidentified as Neisseria gonorrhoeae by nucleic acid amplification testing

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design

High-resolution structural validation of the computational redesign of human U1A protein.

How to Fight Back Against Antibiotic Resistance

Identification of Genes Conferring Tolerance to Lignocellulose-Derived Inhibitors by Functional Selections in Soil Metagenomes

Impact of Amoxicillin-Clavulanate followed by Autologous Fecal Microbiota Transplantation on Fecal Microbiome Structure and Metabolic Potential

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

In Silico Protein Evolution By Intelligent Design: Creating New and Improved Protein Structures ⬇️

Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Insights into How Probiotics Colonize the Healthy Human Gut

Interconnected microbiomes and resistomes in low-income human habitats

KPC and NDM-1 genes in related Enterobacteriaceae strains and plasmids from Pakistan and the United States

Lipid metabolism of phenol-tolerant strains for lignin bioconversion

Longitudinal analysis of microbial interaction between humans and the indoor environment

Mechanism of High-Level Daptomycin Resistance in

Microbiome Restoration by RBX2660 Does Not Preclude Recurrence of Multidrug-Resistant Urinary Tract Infection Following Subsequent Antibiotic Exposure: A Case Report

Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution

Missing Microbes: How the Overuse of Antibiotics is Fueling our Modern Plagues. By Martin J. Blaser. 288 pp. New York: Henry Holt and Company. 2014. $28.00 (cloth), $16.00 (paper), $14.99 (e-book)

Multi-omic elucidation of aromatic catabolism in adaptively evolved Rhodococcus opacus

Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination

Multiscale Evolutionary Dynamics of Host-Associated Microbiomes

Next-generation approaches to understand and combat the antibiotic resistome.

Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs

Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes

Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes

Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities

Publisher Correction: Shared strategies for β-lactam catabolism in the soil microbiome

Semisynthetic Analogues of Anhydrotetracycline as Inhibitors of Tetracycline Destructase Enzymes

Sequencing-based methods and resources to study antimicrobial resistance

Shared strategies for β-lactam catabolism in the soil microbiome

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

Simulating serial-target antibacterial drug synergies using flux balance analysis