Lista de obras - Aris Katzourakis - Dominio Público Uruguay

'There and back again': revisiting the pathophysiological roles of human endogenous retroviruses in the post-genomic era

artículo científico publicado en 2013

A contaminant-free assessment of Endogenous Retroviral RNA in human plasma

artículo científico publicado en 2016

A novel viral lineage distantly related to herpesviruses discovered within fish genome sequence data.

artículo científico

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

artículo científico publicado en 2008

Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4.

artículo científico publicado en 2009

B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection

artículo científico publicado en 2010

BlastAlign: a program that uses blast to align problematic nucleotide sequences.

artículo científico publicado en 2004

Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences

artículo científico publicado en 2008

Convergent capture of retroviral superantigens by mammalian herpesviruses

artículo científico publicado en 2015

De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies

artículo científico publicado en 2016

Detecting natural selection in RNA virus populations using sequence summary statistics

artículo científico publicado en 2009

Discovery and analysis of the first endogenous lentivirus

artículo científico publicado en 2007

Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution

artículo científico publicado en 2014

Disease-associated XMRV sequences are consistent with laboratory contamination

artículo científico publicado en 2010

Disentangling the origins of virophages and polintons

artículo científico publicado en 2017

Editorial overview: Paleovirology: the genomic fossil record, and consequences of ancient viral infections.

artículo científico publicado en 2017

Effects of recombination rate on human endogenous retrovirus fixation and persistence.

artículo científico publicado en 2007

Endogenous retroviruses.

artículo científico publicado en 2015

Endogenous viral elements in animal genomes

artículo científico publicado en 2010

Endogenous viruses: Connecting recent and ancient viral evolution

artículo científico

Env-less endogenous retroviruses are genomic superspreaders

artículo científico publicado en 2012

Evaluating phylogenetic tree shape: two modifications to Fusco & Cronk's method.

artículo científico publicado en 2002

Evolution: Endogenous Viruses Provide Shortcuts in Antiviral Immunity.

artículo científico publicado en 2016

HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification

artículo científico publicado en 2020

HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression

artículo científico publicado en 2015

HLA Footprints on Human Immunodeficiency Virus Type 1 Are Associated with Interclade Polymorphisms and Intraclade Phylogenetic Clustering

scholarly article by Philippa C Matthews et al published 15 April 2011 in Journal of Virology

HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering

artículo científico publicado en 2009

High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection

artículo científico publicado en 2005

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

artículo científico publicado en 2018

Human endogenous retrovirus (HERV) expression is not induced by treatment with the histone deacetylase (HDAC) inhibitors in cellular models of HIV-1 latency

artículo científico publicado en 2016

Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses

artículo científico publicado en 2009

Independent evolution of intracellular transposons from exogenous IAP-related retroviruses in a broad range of mammalian species.

artículo científico publicado en 2011

Larger mammalian body size leads to lower retroviral activity

artículo científico publicado en 2014

Long-term reinfection of the human genome by endogenous retroviruses

artículo científico publicado en 2004

Macroevolution of complex retroviruses

artículo científico publicado en 2009

Macroevolution of hoverflies (Diptera: Syrphidae): the effect of using higher-level taxa in studies of biodiversity, and correlates of species richness

article

Marine origin of retroviruses in the early Palaeozoic Era

artículo científico publicado en 2017

Modular nature of simian foamy virus genomes and their evolutionary history

artículo científico publicado en 2019

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

artículo científico publicado en 2018

Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split

artículo científico publicado en 2015

P07-09. Contemporaneous transmission of genetically distinct HIV variants from a single donor to two recipients.

artículo científico publicado en 2009

Paleovirology of human endogenous retroviruses

artículo científico publicado en 2009

Paleovirology reveals the macroevolution of complex retroviruses

artículo científico publicado en 2009

Paleovirology: inferring viral evolution from host genome sequence data

artículo científico publicado en 2013

Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved

artículo científico publicado en 2016

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants

artículo científico publicado en 2011

Phylogenetic analysis of murine leukemia virus sequences from longitudinally sampled chronic fatigue syndrome patients suggests PCR contamination rather than viral evolution.

artículo científico publicado en 2011

Prevalence of HIV type-1 drug-associated mutations in pre-therapy patients in the Free State, South Africa

artículo científico publicado en 2009

Proceedings of the Frontiers of Retrovirology Conference 2016.

artículo científico publicado en 2016

Rate of recombinational deletion among human endogenous retroviruses

artículo científico publicado en 2007

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects.

artículo científico publicado en 2016

Roles of Endogenous Retroviruses in Early Life Events.

artículo científico publicado en 2017

STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data

artículo científico publicado en 2017

Sex-specific aspects of endogenous retroviral insertion and deletion

artículo científico publicado en 2013

Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface

artículo científico publicado en 2010

The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses

artículo científico publicado en 2019

The evolutionary dynamics of endogenous retroviruses

artículo científico publicado en 2005

The first endogenous herpesvirus, identified in the tarsier genome, and novel sequences from primate rhadinoviruses and lymphocryptoviruses

artículo científico publicado en 2014

The global spread of HIV-1 subtype B epidemic

artículo científico publicado en 2016

The mode and tempo of hepatitis C virus evolution within and among hosts ⬇️

artículo científico publicado en 2011

The origins of giant viruses, virophages and their relatives in host genomes

artículo científico publicado en 2014

Time dependency of foamy virus evolutionary rate estimates

artículo científico publicado en 2015

Time-Dependent Rate Phenomenon in Viruses

artículo científico publicado en 2016

Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients

artículo científico publicado en 2020

Wide distribution and ancient evolutionary history of simian foamy viruses in New World primates

artículo científico publicado en 2015

Lista de obras de Aris Katzourakis

'There and back again': revisiting the pathophysiological roles of human endogenous retroviruses in the post-genomic era

A contaminant-free assessment of Endogenous Retroviral RNA in human plasma

A novel viral lineage distantly related to herpesviruses discovered within fish genome sequence data.

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4.

B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection

BlastAlign: a program that uses blast to align problematic nucleotide sequences.

Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences

Convergent capture of retroviral superantigens by mammalian herpesviruses

De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies

Detecting natural selection in RNA virus populations using sequence summary statistics

Discovery and analysis of the first endogenous lentivirus

Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution

Disease-associated XMRV sequences are consistent with laboratory contamination

Disentangling the origins of virophages and polintons

Editorial overview: Paleovirology: the genomic fossil record, and consequences of ancient viral infections.

Effects of recombination rate on human endogenous retrovirus fixation and persistence.

Endogenous retroviruses.

Endogenous viral elements in animal genomes

Endogenous viruses: Connecting recent and ancient viral evolution

Env-less endogenous retroviruses are genomic superspreaders

Evaluating phylogenetic tree shape: two modifications to Fusco & Cronk's method.

Evolution: Endogenous Viruses Provide Shortcuts in Antiviral Immunity.

HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification

HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression

HLA Footprints on Human Immunodeficiency Virus Type 1 Are Associated with Interclade Polymorphisms and Intraclade Phylogenetic Clustering

HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering

High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

Human endogenous retrovirus (HERV) expression is not induced by treatment with the histone deacetylase (HDAC) inhibitors in cellular models of HIV-1 latency

Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses

Independent evolution of intracellular transposons from exogenous IAP-related retroviruses in a broad range of mammalian species.

Larger mammalian body size leads to lower retroviral activity

Long-term reinfection of the human genome by endogenous retroviruses

Macroevolution of complex retroviruses

Macroevolution of hoverflies (Diptera: Syrphidae): the effect of using higher-level taxa in studies of biodiversity, and correlates of species richness

Marine origin of retroviruses in the early Palaeozoic Era

Modular nature of simian foamy virus genomes and their evolutionary history

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split

P07-09. Contemporaneous transmission of genetically distinct HIV variants from a single donor to two recipients.

Paleovirology of human endogenous retroviruses

Paleovirology reveals the macroevolution of complex retroviruses

Paleovirology: inferring viral evolution from host genome sequence data

Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants

Phylogenetic analysis of murine leukemia virus sequences from longitudinally sampled chronic fatigue syndrome patients suggests PCR contamination rather than viral evolution.

Prevalence of HIV type-1 drug-associated mutations in pre-therapy patients in the Free State, South Africa

Proceedings of the Frontiers of Retrovirology Conference 2016.

Rate of recombinational deletion among human endogenous retroviruses

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects.

Roles of Endogenous Retroviruses in Early Life Events.

STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data

Sex-specific aspects of endogenous retroviral insertion and deletion

Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface

The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses

The evolutionary dynamics of endogenous retroviruses

The first endogenous herpesvirus, identified in the tarsier genome, and novel sequences from primate rhadinoviruses and lymphocryptoviruses

The global spread of HIV-1 subtype B epidemic

The mode and tempo of hepatitis C virus evolution within and among hosts ⬇️

The origins of giant viruses, virophages and their relatives in host genomes

Time dependency of foamy virus evolutionary rate estimates

Time-Dependent Rate Phenomenon in Viruses

Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients

Wide distribution and ancient evolutionary history of simian foamy viruses in New World primates