Lista de obras - Judit Villén - Dominio Público Uruguay

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data

artículo científico publicado en 2022

A conserved MST-FOXO signaling pathway mediates oxidative-stress responses and extends life span

artículo científico publicado en 2006

A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation

artículo científico publicado en 2005

A novel mistranslating tRNA model in <i>Drosophila melanogaster</i> has diverse, sexually dimorphic effects

artículo científico publicado en 2022

A practical recipe to survey phosphoproteomes

artículo científico publicado en 2014

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

artículo científico publicado en 2006

A quantitative atlas of mitotic phosphorylation

artículo científico publicado en 2008

A site-specific, multiplexed kinase activity assay using stable-isotope dilution and high-resolution mass spectrometry

artículo científico publicado en 2009

A tissue-specific atlas of mouse protein phosphorylation and expression

artículo científico publicado en 2010

Affinity-Based Probes Based on Type II Kinase Inhibitors

artículo científico publicado en 2012

Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases

artículo científico publicado en 2010

An AMPK-FOXO pathway mediates longevity induced by a novel method of dietary restriction in C. elegans

artículo científico publicado en 2007

An atlas of human kinase regulation

artículo científico publicado en 2016

Analysis of Molecular Networks in the Cerebellum in Chronic Schizophrenia: Modulation by Early Postnatal Life Stressors in Murine Models

artículo científico publicado en 2021

Angiogenin-induced tRNA fragments inhibit translation initiation

artículo científico publicado en 2011

Author Correction: mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis

artículo científico publicado en 2020

Chemical genetic screen for AMPKα2 substrates uncovers a network of proteins involved in mitosis

artículo científico publicado en 2011

Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries

Drafts of the human proteome

E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis

artículo científico publicado en 2014

Enrichment of Modified Peptides via Immunoaffinity Precipitation with Modification-Specific Antibodies

artículo científico publicado en 2016

Enrichment of Phosphopeptides via Immobilized Metal Affinity Chromatography

artículo científico publicado en 2016

Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis

artículo científico publicado en 2008

Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains

artículo científico publicado en 2015

Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast

artículo científico publicado en 2008

Follistatin-like 3 (FSTL3) mediated silencing of transforming growth factor β (TGFβ) signaling is essential for testicular aging and regulating testis size

artículo científico publicado en 2013

Functional Mimicry of a Discontinuous Antigenic Site by a Designed Synthetic Peptide

artículo científico publicado en 2002

Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG

artículo científico publicado en 2022

Genetic inhibition of hepatic acetyl-CoA carboxylase activity increases liver fat and alters global protein acetylation

artículo científico publicado en 2014

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

scientific article published on 09 June 2013

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

artículo científico publicado en 2010

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

artículo científico publicado en 2007

Hypomorphic Notch 3 alleles link Notch signaling to ischemic cerebral small-vessel disease

artículo científico publicado en 2011

Identification of phosphosites that alter protein thermal stability

publication published on 17 June 2021

Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer

artículo científico publicado en 2006

Large-scale characterization of HeLa cell nuclear phosphoproteins

artículo científico publicado en 2004

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

artículo científico publicado en 2007

Large-scale phosphorylation analysis of mouse liver

artículo científico publicado en 2007

Lipin 2 binds phosphatidic acid by the electrostatic hydrogen bond switch mechanism independent of phosphorylation.

artículo científico publicado en 2014

Modulating Mistranslation Potential of tRNASer in Saccharomyces cerevisiae

scientific article published on 04 September 2019

Optimization and use of peptide mass measurement accuracy in shotgun proteomics

artículo científico publicado en 2006

PKC downregulation upon rapamycin treatment attenuates mitochondrial disease

scientific article published on 14 December 2020

Phosphoproteome Analysis of Fission Yeast

article

Phosphoproteome analysis of Drosophila melanogaster embryos

artículo científico publicado en 2008

Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling

artículo científico publicado en 2011

Phosphoproteomic analysis of the developing mouse brain

artículo científico publicado en 2004

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover ⬇️

artículo científico publicado en 2015

Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry

artículo científico publicado en 2016

Proteome and phosphoproteome analysis of brown adipocytes reveals that RICTOR loss dampens global insulin/AKT signaling

artículo científico publicado en 2020

Proteomic Analysis of Protein Posttranslational Modifications by Mass Spectrometry

article

Proteomic Profiling of ClpXP Substrates after DNA Damage Reveals Extensive Instability within SOS Regulon

article

R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies

artículo científico publicado en 2019

Rational dissection of binding surfaces for mimicking of discontinuous antigenic sites.

artículo científico publicado en 2006

Regulation of neuronal cell death by MST1-FOXO1 signaling

artículo científico publicado en 2009

S. pombe LSD1 Homologs Regulate Heterochromatin Propagation and Euchromatic Gene Transcription

article

Sensitive multiplexed analysis of kinase activities and activity-based kinase identification

artículo científico publicado en 2009

Signaling networks assembled by oncogenic EGFR and c-Met

artículo científico publicado en 2008

Studies on the mechanism of RNAi-dependent heterochromatin assembly

artículo científico publicado en 2006

Survey of activated FLT3 signaling in leukemia

artículo científico publicado en 2011

Synthetic approaches to multivalent lipopeptide dendrimers containing cyclic disulfide epitopes of foot-and-mouth disease virus

artículo científico publicado en 2003

Synthetic peptides as functional mimics of a viral discontinuous antigenic site

artículo científico publicado en 2001

Systematic functional prioritization of protein posttranslational modifications

artículo científico publicado en 2012

Targeting of AMSH to endosomes is required for epidermal growth factor receptor degradation

artículo científico publicado en 2007

The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8.

artículo científico publicado en 2008

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

artículo científico publicado en 2008

The gammaTuRC revisited: a comparative analysis of interphase and mitotic human gammaTuRC redefines the set of core components and identifies the novel subunit GCP8

artículo científico publicado en 2010

The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation

artículo científico publicado en 2012

The impact of microRNAs on protein output

artículo científico publicado en 2008

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses

artículo científico publicado en 2008

The proteomic landscape of triple-negative breast cancer

artículo científico publicado en 2015

The septins function in G1 pathways that influence the pattern of cell growth in budding yeast.

artículo científico publicado en 2008

Thesaurus: quantifying phosphopeptide positional isomers

artículo científico publicado en 2019

Towards a multi-site synthetic vaccine to foot-and-mouth disease: addition of discontinuous site peptide mimic increases the neutralization response in immunized animals

article

Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex

artículo científico publicado en 2011

Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast

Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation

artículo científico publicado en 2008

mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues

artículo científico publicado en 2014

mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis

artículo científico publicado en 2020

Lista de obras de Judit Villén

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data

A conserved MST-FOXO signaling pathway mediates oxidative-stress responses and extends life span

A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation

A novel mistranslating tRNA model in <i>Drosophila melanogaster</i> has diverse, sexually dimorphic effects

A practical recipe to survey phosphoproteomes

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

A quantitative atlas of mitotic phosphorylation

A site-specific, multiplexed kinase activity assay using stable-isotope dilution and high-resolution mass spectrometry

A tissue-specific atlas of mouse protein phosphorylation and expression

Affinity-Based Probes Based on Type II Kinase Inhibitors

Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases

An AMPK-FOXO pathway mediates longevity induced by a novel method of dietary restriction in C. elegans

An atlas of human kinase regulation

Analysis of Molecular Networks in the Cerebellum in Chronic Schizophrenia: Modulation by Early Postnatal Life Stressors in Murine Models

Angiogenin-induced tRNA fragments inhibit translation initiation

Author Correction: mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis

Chemical genetic screen for AMPKα2 substrates uncovers a network of proteins involved in mitosis

Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries

Drafts of the human proteome

E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis

Enrichment of Modified Peptides via Immunoaffinity Precipitation with Modification-Specific Antibodies

Enrichment of Phosphopeptides via Immobilized Metal Affinity Chromatography

Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis

Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains

Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast

Follistatin-like 3 (FSTL3) mediated silencing of transforming growth factor β (TGFβ) signaling is essential for testicular aging and regulating testis size

Functional Mimicry of a Discontinuous Antigenic Site by a Designed Synthetic Peptide

Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG

Genetic inhibition of hepatic acetyl-CoA carboxylase activity increases liver fat and alters global protein acetylation

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

Hypomorphic Notch 3 alleles link Notch signaling to ischemic cerebral small-vessel disease

Identification of phosphosites that alter protein thermal stability

Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer

Large-scale characterization of HeLa cell nuclear phosphoproteins

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

Large-scale phosphorylation analysis of mouse liver

Lipin 2 binds phosphatidic acid by the electrostatic hydrogen bond switch mechanism independent of phosphorylation.

Modulating Mistranslation Potential of tRNASer in Saccharomyces cerevisiae

Optimization and use of peptide mass measurement accuracy in shotgun proteomics

PKC downregulation upon rapamycin treatment attenuates mitochondrial disease

Phosphoproteome Analysis of Fission Yeast

Phosphoproteome analysis of Drosophila melanogaster embryos

Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling

Phosphoproteomic analysis of the developing mouse brain

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover ⬇️

Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry

Proteome and phosphoproteome analysis of brown adipocytes reveals that RICTOR loss dampens global insulin/AKT signaling

Proteomic Analysis of Protein Posttranslational Modifications by Mass Spectrometry

Proteomic Profiling of ClpXP Substrates after DNA Damage Reveals Extensive Instability within SOS Regulon

R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies

Rational dissection of binding surfaces for mimicking of discontinuous antigenic sites.

Regulation of neuronal cell death by MST1-FOXO1 signaling

S. pombe LSD1 Homologs Regulate Heterochromatin Propagation and Euchromatic Gene Transcription

Sensitive multiplexed analysis of kinase activities and activity-based kinase identification

Signaling networks assembled by oncogenic EGFR and c-Met

Studies on the mechanism of RNAi-dependent heterochromatin assembly

Survey of activated FLT3 signaling in leukemia

Synthetic approaches to multivalent lipopeptide dendrimers containing cyclic disulfide epitopes of foot-and-mouth disease virus

Synthetic peptides as functional mimics of a viral discontinuous antigenic site

Systematic functional prioritization of protein posttranslational modifications

Targeting of AMSH to endosomes is required for epidermal growth factor receptor degradation

The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8.

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

The gammaTuRC revisited: a comparative analysis of interphase and mitotic human gammaTuRC redefines the set of core components and identifies the novel subunit GCP8

The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation

The impact of microRNAs on protein output

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses

The proteomic landscape of triple-negative breast cancer

The septins function in G1 pathways that influence the pattern of cell growth in budding yeast.

Thesaurus: quantifying phosphopeptide positional isomers

Towards a multi-site synthetic vaccine to foot-and-mouth disease: addition of discontinuous site peptide mimic increases the neutralization response in immunized animals

Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex

Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast

Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation

mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues

mTORC2-AKT signaling to ATP-citrate lyase drives brown adipogenesis and de novo lipogenesis