Lista de obras - Todd Vision - Dominio Público Uruguay

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

artículo científico publicado en 2012

A Logical Model of Homology for Comparative Biology

artículo científico publicado en 2020

A computational system to select candidate genes for complex human traits

artículo científico

A decadal view of biodiversity informatics: challenges and priorities

artículo científico publicado en 2013

A hierarchical model for incomplete alignments in phylogenetic inference

artículo científico publicado en 2009

A logical model of homology for comparative biology

artículo científico publicado en 2019

An analysis and comparison of the statistical sensitivity of semantic similarity metrics

An international showcase of bioinformatics research

artículo científico publicado en 2003

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

artículo científico publicado en 2018

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

artículo científico publicado en 2014

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

artículo científico publicado en 2022

Assessing the significance of quantitative trait loci in replicable mapping populations

artículo científico publicado en 2006

Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation

artículo científico publicado en 2019

Avoiding "conflicts of interest'': A computational approach to scheduling parallel conference tracks and its human evaluation

Beginning to track 1000 datasets from public repositories into the published literature

Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts

article

Compensatory Evolution in RNA Secondary Structures Increases Substitution Rate Variation among Sites

artículo científico publicado en 2008

Complete plastome sequences of two species from the Galápagos Islands

scientific article published on 30 August 2018

Contrasting modes of diversification in the Aux/IAA and ARF gene families

artículo científico publicado en 2004

Data archiving is a good investment

artículo científico publicado en 2011

Data citation in the wild

article

Data reuse and the open data citation advantage ⬇️

artículo científico publicado en 2013

Data reuse and the open data citation advantage

DataONE: Data Observation Network for Earth Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

article

Divergence in Expression between Duplicated Genes in Arabidopsis

article

Do Synthesis Centers Synthesize? A Semantic Analysis of Diversity and Performance

Do synthesis centers synthesize? A semantic analysis of topical diversity in research

artículo científico publicado en 2021

Evaluating data citation and sharing policies in the environmental sciences

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

artículo científico publicado en 2010

Fast identification and statistical evaluation of segmental homologies in comparative maps.

artículo científico publicado en 2003

Fine mapping a QTL for carbon isotope composition in tomato.

artículo científico publicado en 2008

Gene order in plants: a slow but sure shuffle

artículo científico publicado en 2005

Genetic architecture influences when and how hybridization contributes to colonization

scientific article published on 08 April 2020

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

artículo científico publicado en 2011

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.

artículo científico

Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait

artículo científico publicado en 2003

Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples

artículo científico publicado en 2005

Inferring species trees from gene duplication episodes

article

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

artículo científico publicado en 2010

Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity

Journal data policies: Exploring how the understanding of editors and authors corresponds to the policies themselves

scientific article published on 25 March 2020

Linking Evolution, Ecology, and Health: TriCEM

article

Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles

ODIN: the ORCID and DataCite interoperability network

article published in International Journal of Knowledge and Learning, 2014

Open Data and the Social Contract of Scientific Publishing

2010 article by Todd Vision

Open data for evolutionary synthesis: an introduction to the NESCent collection

artículo científico publicado en 2014

Pathogen-induced systemic resistance in Ipomoea purpurea

artículo científico publicado en 1995

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

artículo científico publicado en 2002

Phenex: ontological annotation of phenotypic diversity

artículo científico publicado en 2010

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

artículo científico publicado en 2016

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

artículo científico publicado en 2009

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

scholarly article published 13 June 2018

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

article

Phytome: a platform for plant comparative genomics

artículo científico publicado en 2006

Science incubators: synthesis centers and their role in the research ecosystem

artículo científico publicado en 2013

Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae

artículo científico publicado en 2009

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

artículo científico publicado en 2006

Taxonomic assessment of blade-forming <i>Ulva</i> species (Ulvales, Chlorophyta) in the Galápagos Archipelago, Ecuador using DNA sequencing

artículo científico publicado en 2024

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

article

The Dryad Digital Repository: Published evolutionary data as part of the greater data ecosystem

artículo científico publicado en 2010

The Teleost Taxonomy Ontology

artículo científico publicado en 2010

The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

article

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

artículo científico publicado en 2011

The location of the citation: changing practices in how publications cite original data in the Dryad Digital Repository

artículo científico publicado en 2016

The molecular ecologist's guide to expressed sequence tags

artículo científico publicado en 2007

The origins of genomic duplications in Arabidopsis

artículo científico publicado en 2000

The standing pool of genomic structural variation in a natural population of Mimulus guttatus

artículo científico publicado en 2014

The teleost anatomy ontology: anatomical representation for the genomics age

artículo científico publicado en 2010

The two faces of secondary contact on islands: Introgressive hybridization between endemics and reproductive interference between endemics and introduced species

artículo científico publicado en 2023

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

artículo científico publicado en 2013

Tracking the evolution of alternatively spliced exons within the Dscam family

artículo científico publicado en 2006

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

artículo científico publicado en 2008

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

artículo científico

What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories

article by Shea Swauger & Todd Vision published 30 January 2015 in International Journal of Digital Curation

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

scientific article published in 2023

Lista de obras de Todd Vision

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

A Logical Model of Homology for Comparative Biology

A computational system to select candidate genes for complex human traits

A decadal view of biodiversity informatics: challenges and priorities

A hierarchical model for incomplete alignments in phylogenetic inference

A logical model of homology for comparative biology

An analysis and comparison of the statistical sensitivity of semantic similarity metrics

An international showcase of bioinformatics research

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

Assessing the significance of quantitative trait loci in replicable mapping populations

Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation

Avoiding "conflicts of interest'': A computational approach to scheduling parallel conference tracks and its human evaluation

Beginning to track 1000 datasets from public repositories into the published literature

Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts

Compensatory Evolution in RNA Secondary Structures Increases Substitution Rate Variation among Sites

Complete plastome sequences of two species from the Galápagos Islands

Contrasting modes of diversification in the Aux/IAA and ARF gene families

Data archiving is a good investment

Data citation in the wild

Data reuse and the open data citation advantage ⬇️

Data reuse and the open data citation advantage

DataONE: Data Observation Network for Earth Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

Divergence in Expression between Duplicated Genes in Arabidopsis

Do Synthesis Centers Synthesize? A Semantic Analysis of Diversity and Performance

Do synthesis centers synthesize? A semantic analysis of topical diversity in research

Evaluating data citation and sharing policies in the environmental sciences

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

Fast identification and statistical evaluation of segmental homologies in comparative maps.

Fine mapping a QTL for carbon isotope composition in tomato.

Gene order in plants: a slow but sure shuffle

Genetic architecture influences when and how hybridization contributes to colonization

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.

Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait

Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples

Inferring species trees from gene duplication episodes

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity

Journal data policies: Exploring how the understanding of editors and authors corresponds to the policies themselves

Linking Evolution, Ecology, and Health: TriCEM

Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles

ODIN: the ORCID and DataCite interoperability network

Open Data and the Social Contract of Scientific Publishing

Open data for evolutionary synthesis: an introduction to the NESCent collection

Pathogen-induced systemic resistance in Ipomoea purpurea

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

Phenex: ontological annotation of phenotypic diversity

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phytome: a platform for plant comparative genomics

Science incubators: synthesis centers and their role in the research ecosystem

Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

Taxonomic assessment of blade-forming <i>Ulva</i> species (Ulvales, Chlorophyta) in the Galápagos Archipelago, Ecuador using DNA sequencing

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

The Dryad Digital Repository: Published evolutionary data as part of the greater data ecosystem

The Teleost Taxonomy Ontology

The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

The location of the citation: changing practices in how publications cite original data in the Dryad Digital Repository

The molecular ecologist's guide to expressed sequence tags

The origins of genomic duplications in Arabidopsis

The standing pool of genomic structural variation in a natural population of Mimulus guttatus

The teleost anatomy ontology: anatomical representation for the genomics age

The two faces of secondary contact on islands: Introgressive hybridization between endemics and reproductive interference between endemics and introduced species

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Tracking the evolution of alternatively spliced exons within the Dscam family

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits