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Lista de obras de Henrik Nilsson

14 Agaricomycetes

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

artículo científico publicado en 2009

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

artículo científico publicado en 2010

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

artículo científico publicado en 2015

A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation

artículo científico publicado en 2011

A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol in tolerant periphyton communities

artículo científico publicado en 2009

A price tag on species

artículo científico publicado en 2022

A software pipeline for processing and identification of fungal ITS sequences

artículo científico publicado en 2009

A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes

artículo científico publicado en 2008

Above‐ and below‐ground biodiversity responses to the prolonged flood pulse in central‐western Amazonia, Brazil

artículo científico publicado en 2021

Airborne DNA reveals predictable spatial and seasonal dynamics of fungi

artículo científico publicado en 2024

An open source chimera checker for the fungal ITS region

artículo científico publicado en 2010

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

scholarly article by Henrik Nilsson et al published November 2010 in Fungal Ecology

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

artículo científico publicado en 2009

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences

artículo científico publicado en 2006

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

artículo científico publicado en 2016

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

artículo científico publicado en 2005

Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi).

artículo científico publicado en 2005

Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation

artículo científico publicado en 2015

Biodiversity assessments in the 21st century: the potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding

artículo científico publicado en 2019

Connecting the multiple dimensions of global soil fungal diversity

artículo científico publicado en 2023

Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)

artículo científico publicado en 2007

Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

artículo científico publicado en 2021

Critical Issues in Mycobiota Analysis

artículo científico publicado en 2017

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

artículo científico publicado en 2010

Decreased soil moisture due to warming drives phylogenetic diversity and community transitions in the tundra

artículo científico publicado en 2021

Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)

artículo científico publicado en 2016

Digital identifiers for fungal species

artículo científico publicado en 2016

DivBayes and SubT: exploring species diversification using Bayesian statistics

artículo científico publicado en 2011

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

artículo científico publicado en 2013

Environmental impact assessment in Brazilian Amazonia: Challenges and prospects to assess biodiversity

article

European earthstars in Geastraceae (Geastrales, Phallomycetidae) – a systematic approach using morphology and molecular sequence data

scientific article published in 2013

Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding

artículo científico publicado en 2019

FUNGAL BIOGEOGRAPHY. Response to Comment on "Global diversity and geography of soil fungi".

artículo científico publicado en 2015

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

artículo científico publicado en 2014

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

artículo científico publicado en 2012

Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota).

artículo científico publicado en 2006

Fungal biogeography. Global diversity and geography of soil fungi

artículo científico publicado en 2014

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide

artículo científico publicado en 2013

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

artículo científico publicado en 2020

Future Perspectives and Challenges of Fungal Systematics in the Age of Big Data

Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA

artículo científico publicado en 2024

Global patterns in endemicity and vulnerability of soil fungi

artículo científico publicado en 2022

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding

scientific article published in 2018

Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome-Picea glauca system at an arctic treeline ecotone

artículo científico publicado en 2016

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia

artículo científico publicado en 2018

ITS1 versus ITS2 as DNA metabarcodes for fungi

artículo científico publicado en 2013

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

article

Improving ITS sequence data for identification of plant pathogenic fungi

article

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

artículo científico publicado en 2008

Introducing ribosomal tandem repeat barcoding for fungi

artículo científico publicado en 2018

Introducing ribosomal tandem repeat barcoding for fungi

Locality or habitat? Exploring predictors of biodiversity in Amazonia

artículo científico publicado en 2018

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.

artículo científico publicado en 2015

Mapping and Publishing Sequence-Derived Data through Biodiversity Data Platforms

artículo científico publicado en 2020

Meeting report: fungal its workshop (october 2012).

artículo científico publicado en 2013

Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets

artículo científico publicado en 2012

Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities

artículo científico publicado en 2015

Metaxa, Overview

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker

scholarly article by Johan Bengtsson-Palme published in June 2018

Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2

article

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

artículo científico publicado en 2011

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

artículo científico publicado en 2015

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

artículo científico publicado en 2008

Molecular Identification of Fungi: Rationale, Philosophical Concerns, and the UNITE Database

Molecular Techniques in Mycological Studies and Sequence Data Curating: Quality Control and Challenges

Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota

artículo científico publicado en 2017

Morphology and phylogeny reveal a novel hydnoid taxon from India:Mycorrhaphoides stalpersiigen. and sp. nov

scholarly article by M. E. Hembrom et al published 6 October 2016 in Nordic Journal of Botany

Morphology, anatomy, and molecular studies of the ectomycorrhiza formed axenically by the fungus Sistotrema sp. (Basidiomycota)

scientific article published in 2011

Mycobiome diversity: high-throughput sequencing and identification of fungi

artículo científico publicado en 2019

Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition

article

New light on names and naming of dark taxa

artículo científico publicado en 2018

Novel soil-inhabiting clades fill gaps in the fungal tree of life

artículo científico publicado en 2017

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

artículo científico publicado en 2013

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

scientific article published in 2014

Phylogeny and taxonomy of the genus Vuilleminia (Basidiomycota) based on molecular and morphological evidence, with new insights into Corticiales

artículo científico publicado en 2010

Phylogeny of the Hypochnicium punctulatum complex as inferred from ITS sequence data

artículo científico publicado en 2003

Phylogeography of Hyphoderma setigerum (Basidiomycota) in the Northern Hemisphere.

artículo científico publicado en 2003

PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences.

artículo científico publicado en 2010

Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds

artículo científico publicado en 2017

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

scientific article published in 2011

Protax -fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences

artículo científico publicado en 2018

Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic, and endophytic resupinate fungi

artículo científico publicado en 2008

Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars

artículo científico publicado en 2012

Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory

artículo científico publicado en 2017

Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella clades

scientific article published in 2017

Rethinking taxon sampling in the light of environmental sequencing

article by Henrik Nilsson et al published 25 August 2010 in Cladistics

Sequence-based classification and identification of Fungi ⬇️

artículo científico publicado en 2016

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

artículo científico publicado en 2015

Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna metabarcoding

artículo científico publicado en 2020

Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing

article

Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data

scientific article published on 04 April 2019

Species complexes in Hericium (Russulales, Agaricomycota) and a new species - Hericium rajchenbergii - from southern South America

article

Standardizing metadata and taxonomic identification in metabarcoding studies

artículo científico publicado en 2015

Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data

artículo científico publicado en 2011

Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK).

artículo científico publicado en 2018

Taxonomic identification from metagenomic and metabarcoding data using any genetic marker

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

artículo científico publicado en 2006

The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

scholarly article by Subashini C. Jayasiri et al published September 2015 in Fungal Diversity

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research ⬇️

artículo científico

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

artículo científico publicado en 2009

The Peniophorella praetermissa species complex (Basidiomycota).

artículo científico publicado en 2007

The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa

scientific article published on 30 November 2020

The UNITE Database for Molecular Identification and for Communicating Fungal Species

scientific article published in 2019

The UNITE database for molecular identification of fungi--recent updates and future perspectives

artículo científico publicado en 2010

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

scholarly article by Henrik Nilsson et al published 29 October 2018 in Nucleic Acids Research

The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods

artículo científico publicado en 2006

The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding

artículo científico publicado en 2022

The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia

scientific article published on 16 December 2019

The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota)

artículo científico publicado en 2010

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi

artículo científico publicado en 2011

Top 50 most wanted fungi

artículo científico publicado en 2016

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.

artículo científico publicado en 2016

Towards a unified paradigm for sequence-based identification of fungi

artículo científico publicado en 2013

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

artículo científico publicado en 2011

Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar concentration

Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar concentration

UNITE Species Hypotheses Matching Analysis

artículo científico publicado en 2022

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

artículo científico publicado en 2005

Unbiased probabilistic taxonomic classification for DNA barcoding

artículo científico publicado en 2016

Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales)

artículo científico publicado en 2017

Unravelling soil fungal communities from different Mediterranean land-use backgrounds

artículo científico publicado en 2012

V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets

artículo científico publicado en 2011

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

artículo científico publicado en 2010

When mycologists describe new species, not all relevant information is provided (clearly enough)

artículo científico publicado en 2020

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis

artículo científico publicado en 2004

galaxieEST: addressing EST identity through automated phylogenetic analysis

artículo científico publicado en 2004

Evidence for further non-coding RNA genes in the fungal rDNA region

artículo científico publicado en 2022

Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms

artículo científico publicado en 2022

The curse of the uncultured fungus ⬇️

artículo científico

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