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Lista de obras de Ben F Koop

A 200K SNP chip reveals a novel Pacific salmon louse genotype linked to differential efficacy of emamectin benzoate

artículo científico publicado en 2018

A 39-kb sequence around a blackbird Mhc class II gene: ghost of selection past and songbird genome architecture

artículo científico publicado en 2000

A comprehensive analysis of teleost MHC class I sequences

artículo científico publicado en 2015

A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary

artículo científico publicado en 2004

A conserved sequence block in murine and human T cell receptor (TCR) Jalpha region is a composite element that enhances TCR alpha enhancer activity and binds multiple nuclear factors

artículo científico publicado en 1998

A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences

artículo científico publicado en 2018

A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects

artículo científico publicado en 2005

A human homolog of the vaccinia virus HindIII K4L gene is a member of the phospholipase D superfamily

scientific journal article

A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers

artículo científico publicado en 2008

A physical map of the genome of Atlantic salmon, Salmo salar

artículo científico publicado en 2005

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

artículo científico publicado en 2008

A survey of expressed sequence tags from the rainbow trout (Oncorhynchus mykiss) pituitary

artículo científico

A transcriptomic scan for positively selected genes in two closely related marine fishes: Sebastes caurinus and S. rastrelliger

artículo científico publicado en 2011

ARS2 is a conserved eukaryotic gene essential for early mammalian development

artículo científico publicado en 2007

An experimentally derived data set constructed for testing large-scale DNA sequence assembly algorithms

artículo científico publicado en 1993

An update of the salmon louse (Lepeophtheirus salmonis) reference genome assembly

artículo científico publicado en 2022

Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus

scientific article published on 01 February 1996

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome

artículo científico publicado en 2008

Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

artículo científico publicado en 2009

Atlantic salmon possesses two clusters of type I interferon receptor genes on different chromosomes, which allows for a larger repertoire of interferon receptors than in zebrafish and mammals

artículo científico publicado en 2014

Author Correction: Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

artículo científico publicado en 2021

Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids

artículo científico publicado en 2007

COASTAL REFUGIA AND POSTGLACIAL RECOLONIZATION ROUTES: A REPLY TO DEMBOSKI, STONE, AND COOK.

artículo científico publicado en 1999

Caligus rogercresseyi acetylcholinesterase types and variants: a potential marker for organophosphate resistance

artículo científico publicado en 2018

Cell death attenuation by 'Usurpin', a mammalian DED-caspase homologue that precludes caspase-8 recruitment and activation by the CD-95 (Fas, APO-1) receptor complex

artículo científico publicado en 1998

Characterization of the Atlantic salmon (Salmo salar) brain-type fatty acid binding protein (fabp7) genes reveals the fates of teleost fabp7 genes following whole genome duplications

artículo científico publicado en 2012

Chemokine receptors in Atlantic salmon

artículo científico publicado en 2014

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome.

artículo científico publicado en 2018

Cloning and characterization of the kinetoplastid membrane protein-11 gene locus of Trypanosoma brucei

artículo científico publicado en 1998

Cloning and characterization of three novel genes, ALS2CR1, ALS2CR2, and ALS2CR3, in the juvenile amyotrophic lateral sclerosis (ALS2) critical region at chromosome 2q33-q34: candidate genes for ALS2.

artículo científico publicado en 2001

Coastal Refugia and Postglacial Recolonization Routes: A Reply to Demboski, Stone, and Cook

Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5

artículo científico publicado en 2001

Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes

artículo científico publicado en 2006

Comparative defense-associated responses in salmon skin elicited by the ectoparasite Lepeophtheirus salmonis

article

Comparative genomic analysis of Atlantic salmon, Salmo salar, from Europe and North America

artículo científico publicado en 2010

Comparative genomics identifies candidate genes for infectious salmon anemia (ISA) resistance in Atlantic salmon (Salmo salar)

artículo científico publicado en 2010

Comparative genomics of the human and mouse T cell receptor loci

artículo científico publicado en 2001

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication

artículo científico publicado en 2021

Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis

artículo científico publicado en 2014

Complete nucleotide sequence of the cosmid vector pWE15A.

artículo científico publicado en 1992

Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon

artículo científico publicado en 2010

Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates

artículo científico publicado en 2013

Contaminant-associated disruption of vitamin A and its receptor (retinoic acid receptor alpha) in free-ranging harbour seals (Phoca vitulina).

artículo científico publicado en 2007

Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.).

artículo científico

Correlation of UV-induced mutational spectra and the in vitro damage distribution at the human hprt gene

article

Cypermethrin exposure induces metabolic and stress-related gene expression in copepodid salmon lice (Lepeophtheirus salmonis).

artículo científico publicado en 2016

DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing

artículo científico publicado en 1993

Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements

artículo científico publicado en 1999

Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics

artículo científico publicado en 2004

Differential modulation of resistance biomarkers in skin of juvenile and mature pink salmon, Oncorhynchus gorbuscha by the salmon louse, Lepeophtheirus salmonis

artículo científico publicado en 2015

Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections.

artículo científico publicado en 2011

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

artículo científico publicado en 2008

Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss

artículo científico publicado en 2014

ERCC1: a comparative genomic perspective

artículo científico publicado en 2001

EST and mitochondrial DNA sequences support a distinct Pacific form of salmon louse, Lepeophtheirus salmonis

artículo científico publicado en 2008

Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis

article

Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)

artículo científico publicado en 2011

Effects of diesel on survival, growth, and gene expression in rainbow trout (Oncorhynchus mykiss) fry.

artículo científico publicado en 2008

Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis).

artículo científico publicado en 2017

Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints

artículo científico publicado en 1988

Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar suggests increased parasite fitness ⬇️

artículo científico publicado en 2017

Establishment and characterization of a new human Burkitt's lymphoma cell line (WSU-BL).

artículo científico publicado en 1989

Evolution and Selection of Primate T Cell Antigen Receptor BV8 Gene Subfamily

article

Evolution of duplicated IgH loci in Atlantic salmon, Salmo salar

artículo científico publicado en 2010

Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes

article

Evolutionary and developmental aspects of two hemoglobin beta-chain genes (epsilon M and beta M) of opossum

artículo científico publicado en 1988

Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein

artículo científico publicado en 2005

Expression of olfactory receptors in different life stages and life histories of wild Atlantic salmon (Salmo salar).

artículo científico publicado en 2011

Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray

artículo científico publicado en 2005

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

artículo científico publicado en 2017

Functional adaptive diversity of the Atlantic salmon T-cell receptor gamma locus

article

GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets ⬇️

artículo científico publicado el 28 de julio de 2011

General and family-specific gene expression responses to viral hemorrhagic septicaemia virus infection in rainbow trout (Oncorhynchus mykiss).

artículo científico

Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

artículo científico publicado en 2021

Genomic organization and characterization of two vomeronasal 1 receptor-like genes (ora1 and ora2) in Atlantic salmon Salmo salar

artículo científico publicado en 2008

Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

artículo científico publicado en 2010

Genomic organization and evolution of the vomeronasal type 2 receptor-like (OlfC) gene clusters in Atlantic salmon, Salmo salar

artículo científico publicado en 2009

Genomic organization of Atlantic salmon (Salmo salar) fatty acid binding protein (fabp2) genes reveals independent loss of duplicate loci in teleosts

artículo científico publicado en 2009

Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar).

artículo científico publicado en 2007

Genomic resources for sea lice: analysis of ESTs and mitochondrial genomes

artículo científico publicado en 2011

Genomic sequence comparison of the human and mouse adenosine deaminase gene regions

artículo científico publicado en 1999

Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene

artículo científico publicado en 2013

Glacial biogeography of North American coho salmon (Oncorhynchus kisutch).

artículo científico publicado en 2001

Globins: A Case Study in Molecular Phylogeny

artículo científico publicado en 1987

Grayling (Thymallinae) phylogeny within salmonids: complete mitochondrial DNA sequences of Thymallus arcticus and Thymallus thymallus

artículo científico publicado en 2010

High gene expression of inflammatory markers and IL-17A correlates with severity of injection site reactions of Atlantic salmon vaccinated with oil-adjuvanted vaccines

artículo científico publicado en 2010

High level efficacy of lufenuron against sea lice (Lepeophtheirus salmonis) linked to rapid impact on moulting processes

artículo científico publicado en 2018

How does sequence variability affectde novoassembly quality?

scientific article published in 2013

Human and mouse T-cell receptor loci: genomics, evolution, diversity, and serendipity.

artículo científico publicado en 1995

Human and mouse T-cell-receptor loci: the importance of comparative large-scale DNA sequence analyses

artículo científico publicado en 1993

Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution

artículo científico publicado en 1995

Human chromosome 7: DNA sequence and biology

artículo científico publicado en 2003

Identification of Sonic hedgehog as a candidate gene responsible for holoprosencephaly

artículo científico publicado en 1996

Identification of Surrogates of Protection against Yersiniosis in Immersion Vaccinated Atlantic Salmon ⬇️

artículo científico publicado el 12 de julio de 2012

Identification of a molecular marker for type A spermatogonia by microarray analysis using gonadal cells from pvasa-GFP transgenic rainbow trout (Oncorhynchus mykiss).

artículo científico publicado en 2009

Identification of a novel lipase gene mutated in lpd mice with hypertriglyceridemia and associated with dyslipidemia in humans

artículo científico publicado en 2003

Identification of genes associated with heat tolerance in Arctic charr exposed to acute thermal stress

artículo científico publicado en 2011

Identification of genes from a 500-kb region at 7q11.23 that is commonly deleted in Williams syndrome patients

artículo científico publicado en 1996

Identification of olfactory receptor genes in Atlantic salmon Salmo salar

artículo científico publicado en 2012

Identification of the sex chromosomes of brown trout (Salmo trutta) and their comparison with the corresponding chromosomes in Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss).

artículo científico publicado en 2011

Identification of the sex-determining locus of Atlantic salmon (Salmo salar) on chromosome 2.

artículo científico publicado en 2006

Infectious hematopoietic necrosis virus (IHNV) persistence in Sockeye Salmon: influence on brain transcriptome and subsequent response to the viral mimic poly(I:C)

artículo científico publicado en 2015

Isolation, characterization and comparison of Atlantic and Chinook salmon growth hormone 1 and 2.

artículo científico publicado en 2008

Large-scale DNA sequencing

artículo científico publicado en 1991

Large-scale and automated DNA sequence determination

artículo científico publicado en 1991

Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus)

artículo científico publicado en 2020

Loss-of-function mutations in a calcium-channel alpha1-subunit gene in Xp11.23 cause incomplete X-linked congenital stationary night blindness

artículo científico publicado en 1998

Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection.

artículo científico publicado en 2004

Microarray analysis reveals differences in expression of cell surface and extracellular matrix components during development of the trout ovary and testis

article

Model genomes: the benefits of analysing homologous human and mouse sequences

artículo científico publicado en 1992

Molecular systematics of higher primates: genealogical relations and classification

artículo científico publicado en 1988

Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication

artículo científico publicado en 2015

Multiple microarray platforms utilized for hepatic gene expression profiling of GH transgenic coho salmon with and without ration restriction

article

Mutations in NYX, encoding the leucine-rich proteoglycan nyctalopin, cause X-linked complete congenital stationary night blindness

artículo científico publicado en 2000

Mutations of the forkhead/winged-helix gene, FKHL7, in patients with Axenfeld-Rieger anomaly

artículo científico publicado en 1998

Nucleotide sequence analysis of 77.7 kb of the human V beta T-cell receptor gene locus: direct primer-walking using cosmid template DNAs

artículo científico publicado en 1994

Nucleotide sequence analysis of 95 kb near the 3' end of the murine T-cell receptor alpha/delta chain locus: strategy and methodology

artículo científico publicado en 1992

Nucleotide sequence and evolution of the orangutan epsilon globin gene region and surrounding Alu repeats

artículo científico publicado en 1986

Numerous chromosomal polymorphisms in a natural population of rice rats ( Oryzomys , Cricetidae)

artículo científico publicado en 1983

Organization, sequence, and function of 34.5 kb of genomic DNA encompassing several murine T-cell receptor alpha/delta variable gene segments

artículo científico publicado en 1994

Organization, structure, and function of 95 kb of DNA spanning the murine T-cell receptor C alpha/C delta region.

artículo científico publicado en 1992

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

artículo científico publicado en 2017

Partial 28S rDNA sequences and the antiquity of hydrothermal vent endemic gastropods.

artículo científico publicado en 1999

Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2010-30 September 2010.

artículo científico publicado en 2011

Population Structure of Sockeye Salmon of the Central Coast of British Columbia: Implications for Recovery Planning

Population genetic analysis of white sturgeon (Acipenser transmontanus) in the Fraser River

article

Primate eta-globin DNA sequences and man's place among the great apes

artículo científico publicado en 1986

Publisher Correction: Sex-dependent dominance maintains migration supergene in rainbow trout

artículo científico publicado en 2020

Pufferfish and new paradigm for comparative genome analysis

artículo científico publicado en 1996

Rainbow smelt (Osmerus mordax) genomic library and EST resources

artículo científico publicado en 2008

Recent advances in conservation and population genomics data analysis

Regulation and expression of sexual differentiation factors in embryonic and extragonadal tissues of Atlantic salmon

artículo científico publicado en 2011

Regulation, expression and characterization of aromatase (cyp19b1) transcripts in ovary and testis of rainbow trout (Oncorhynchus mykiss).

artículo científico publicado en 2010

Regulatory processes that control haploid expression of salmon sperm mRNAs

Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish

scientific article published on 20 February 2020

Restricted usage of T-cell receptor V alpha sequence and variable-joining pairs after normal T-cell development and bone marrow transplantation

artículo científico publicado en 1993

Ribosomal genes and heat shock proteins as putative markers for chronic, sublethal heat stress in Arctic charr: applications for aquaculture and wild fish

artículo científico publicado en 2011

Risk-based analysis of polychlorinated biphenyl toxicity in harbor seals

artículo científico publicado en 2010

Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.

artículo científico publicado en 2010

Sequence analysis and organization of the Neodiprion abietis nucleopolyhedrovirus genome

artículo científico publicado en 2006

Sequence analysis of a rainbow trout cDNA library and creation of a gene index

artículo científico publicado en 2003

Sequencing the genome of the Atlantic salmon (Salmo salar).

artículo científico publicado en 2010

Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)

artículo científico publicado en 2016

Sex-dependent dominance maintains migration supergene in rainbow trout

scientific article published on 25 November 2019

Sex-specific expression and localization of aromatase and its regulators during embryonic and larval development of Atlantic salmon

artículo científico publicado en 2013

Sex-specific expression, synthesis and localization of aromatase regulators in one-year-old Atlantic salmon ovaries and testes

artículo científico publicado en 2013

Signatures of resistance to Lepeophtheirus salmonis include a TH2-type response at the louse-salmon interface.

artículo científico publicado en 2014

Sixteen type 1 polymorphic microsatellite markers from Chinook salmon (Oncorhynchus tshawytscha) expressed sequence tags

artículo científico publicado en 2007

Striking antigen recognition diversity in the Atlantic salmon T-cell receptor alpha/delta locus

artículo científico publicado en 2007

Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA

artículo científico publicado en 1994

Subcellular localization and characterization of estrogenic pathway regulators and mediators in Atlantic salmon spermatozoal cells.

artículo científico publicado en 2017

TCR and CD3 antibody cross-reactivity in 44 species

article

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

retracted paper

The Atlantic salmon genome provides insights into rediploidization

artículo científico publicado en 2016

The Primary Structure of a Mouse-Eared Bat(Myotis velifer,Chiroptera) Hemoglobin

artículo científico publicado en 1986

The complete 685-kilobase DNA sequence of the human beta T cell receptor locus

artículo científico publicado en 1996

The complete nucleotide sequence of cosmid vector pTL5: location and origin of its genetic components

artículo científico publicado en 1994

The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei

artículo científico publicado en 2014

The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette

artículo científico publicado en 2006

The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA.

artículo científico publicado en 1994

The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

artículo científico publicado en 2021

The sex determining loci and sex chromosomes in the family salmonidae

artículo científico publicado en 2009

The structure and evolution of the ribosomal proteins encoded in the spc operon of the archaeon (Crenarchaeota) Sulfolobus acidocaldarius

artículo científico publicado en 1999

Toxicogenomic responses in rainbow trout (Oncorhynchus mykiss) hepatocytes exposed to model chemicals and a synthetic mixture.

artículo científico publicado en 2007

Transcriptional responses in a Drosophila defensive symbiosis

artículo científico publicado en 2013

Transcriptome profiling the gills of amoebic gill disease (AGD)-affected Atlantic salmon (Salmo salar L.): a role for tumor suppressor p53 in AGD pathogenesis?

artículo científico publicado en 2006

Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance

artículo científico publicado en 2014

Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress

artículo científico publicado en 2012

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