Lista de obras - Christopher J. Creevey - Dominio Público Uruguay

A computational screen for type I polyketide synthases in metagenomics shotgun data

artículo científico publicado en 2008

AQUA: automated quality improvement for multiple sequence alignments

artículo científico publicado en 2009

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future

artículo científico publicado en 2018

Adult schistosomes have an epithelial bacterial population distinct from the surrounding mammalian host blood

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

artículo científico publicado en 2002

An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly

artículo científico publicado en 2016

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats

artículo científico publicado en 2018

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

artículo científico publicado en 2006

Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis.

artículo científico publicado en 2017

CRANN: detecting adaptive evolution in protein-coding DNA sequences

artículo científico publicado en 2003

Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks.

artículo científico

Clann: investigating phylogenetic information through supertree analyses

artículo científico publicado en 2004

Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

artículo científico publicado en 2019

Concatabominations: identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction

artículo científico publicado en 2015

Consistent mutational paths predict eukaryotic thermostability

artículo científico publicado en 2013

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software. ⬇️

artículo científico publicado en 2018

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

artículo científico publicado en 2018

Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes.

artículo científico publicado en 2018

Detecting adaptive molecular evolution: additional tools for the parasitologist

artículo científico publicado en 2003

Determining the culturability of the rumen bacterial microbiome

artículo científico publicado en 2014

Differential gene expression in the endometrium reveals cytoskeletal and immunological genes in lactating dairy cows genetically divergent for fertility traits

article by Bruce Moran et al published 2015 in Reproduction, Fertility and Development

Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome

artículo científico publicado en 2017

Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods

artículo científico publicado en 2014

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

scholarly article by Christopher J. Creevey et al published 22 December 2004 in Proceedings of the Royal Society B

Duplicate retention in signalling proteins and constraints from network dynamics.

artículo científico publicado en 2010

Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology

artículo científico publicado en 2017

Evidence of positive Darwinian selection in putative meningococcal vaccine antigens

artículo científico publicado en 2005

Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

artículo científico publicado en 2003

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring.

artículo científico publicado en 2018

Fertility and genomics: comparison of gene expression in contrasting reproductive tissues of female cattle.

artículo científico publicado en 2015

Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human

scientific article published on 01 September 2019

Genome Phylogenies Indicate a Meaningful α-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales

scholarly article by David A. Fitzpatrick et al published 8 September 2005 in Molecular Biology and Evolution

Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes

artículo científico publicado en 2014

Genome-wide experimental determination of barriers to horizontal gene transfer.

artículo científico publicado en 2007

Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows

artículo científico publicado en 2012

Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis

artículo científico publicado en 2015

Identifying single copy orthologs in Metazoa

artículo científico publicado en 2011

Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics

artículo científico publicado en 2015

Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics

article

Insights into the skin of caecilian amphibians from gene expression profiles

scientific article published on 27 July 2020

L.U.St: a tool for approximated maximum likelihood supertree reconstruction

artículo científico publicado en 2014

Meta-proteomics of rumen microbiota indicates niche compartmentalisation and functional dominance in a limited number of metabolic pathways between abundant bacteria.

artículo científico publicado en 2018

Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community

artículo científico publicado en 2014

Mitochondrial data are not suitable for resolving placental mammal phylogeny

artículo científico publicado en 2014

Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families

article

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples

artículo científico publicado en 2012

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

artículo científico publicado en 2012

Rumen Methanogenic Genotypes Differ in Abundance According to Host Residual Feed Intake Phenotype and Diet Type.

artículo científico publicado en 2014

Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type

artículo científico publicado en 2013

STRING 8--a global view on proteins and their functional interactions in 630 organisms

artículo científico publicado en 2009

Signatures of the evolution of parthenogenesis and cryptobiosis in panagrolaimid nematodes

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

artículo científico publicado en 2013

Spherical: an iterative workflow for assembling metagenomic datasets

artículo científico publicado en 2018

Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass.

artículo científico publicado en 2015

The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa

artículo científico publicado en 2005

The integration of 'omic' disciplines and systems biology in cattle breeding.

artículo científico

The rumen microbiome: an underexplored resource for novel antimicrobial discovery.

artículo científico publicado en 2017

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

artículo científico publicado en 2005

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

artículo científico publicado en 2006

Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

artículo científico publicado en 2016

Trees from trees: construction of phylogenetic supertrees using clann

artículo científico publicado en 2009

Universally distributed single-copy genes indicate a constant rate of horizontal transfer

artículo científico publicado en 2011

Using the forces of hydrodynamic countercurrent chromatography for the study of bacteriophages

artículo científico publicado en 2022

Visualization of multiple alignments, phylogenies and gene family evolution

artículo científico publicado en 2010

What lies beneath? Molecular evolution during the radiation of caecilian amphibians

artículo científico publicado en 2019

Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle

artículo científico publicado en 2014

eggNOG v4.0: nested orthology inference across 3686 organisms

artículo científico publicado en 2013

Lista de obras de Christopher J. Creevey

A computational screen for type I polyketide synthases in metagenomics shotgun data

AQUA: automated quality improvement for multiple sequence alignments

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future

Adult schistosomes have an epithelial bacterial population distinct from the surrounding mammalian host blood

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis.

CRANN: detecting adaptive evolution in protein-coding DNA sequences

Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks.

Clann: investigating phylogenetic information through supertree analyses

Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

Concatabominations: identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction

Consistent mutational paths predict eukaryotic thermostability

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software. ⬇️

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes.

Detecting adaptive molecular evolution: additional tools for the parasitologist

Determining the culturability of the rumen bacterial microbiome

Differential gene expression in the endometrium reveals cytoskeletal and immunological genes in lactating dairy cows genetically divergent for fertility traits

Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome

Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

Duplicate retention in signalling proteins and constraints from network dynamics.

Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology

Evidence of positive Darwinian selection in putative meningococcal vaccine antigens

Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring.

Fertility and genomics: comparison of gene expression in contrasting reproductive tissues of female cattle.

Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human

Genome Phylogenies Indicate a Meaningful α-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales

Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes

Genome-wide experimental determination of barriers to horizontal gene transfer.

Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows

Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis

Identifying single copy orthologs in Metazoa

Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics

Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics

Insights into the skin of caecilian amphibians from gene expression profiles

L.U.St: a tool for approximated maximum likelihood supertree reconstruction

Meta-proteomics of rumen microbiota indicates niche compartmentalisation and functional dominance in a limited number of metabolic pathways between abundant bacteria.

Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community

Mitochondrial data are not suitable for resolving placental mammal phylogeny

Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

Rumen Methanogenic Genotypes Differ in Abundance According to Host Residual Feed Intake Phenotype and Diet Type.

Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type

STRING 8--a global view on proteins and their functional interactions in 630 organisms

Signatures of the evolution of parthenogenesis and cryptobiosis in panagrolaimid nematodes

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

Spherical: an iterative workflow for assembling metagenomic datasets

Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass.

The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa

The integration of 'omic' disciplines and systems biology in cattle breeding.

The rumen microbiome: an underexplored resource for novel antimicrobial discovery.

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

Trees from trees: construction of phylogenetic supertrees using clann

Universally distributed single-copy genes indicate a constant rate of horizontal transfer

Using the forces of hydrodynamic countercurrent chromatography for the study of bacteriophages

Visualization of multiple alignments, phylogenies and gene family evolution

What lies beneath? Molecular evolution during the radiation of caecilian amphibians

Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle

eggNOG v4.0: nested orthology inference across 3686 organisms