Lista de obras - Martin Weigt - Dominio Público Uruguay

A ferromagnet with a glass transition

A multi-scale coevolutionary approach to predict interactions between protein domains

scientific article published on 21 October 2019

Aligning graphs and finding substructures by a cavity approach

An evolution-based model for designing chorismate mutase enzymes

scientific article published on 01 July 2020

Cavity approach to the random solid state

artículo científico publicado en 2005

Classification and sparse-signature extraction from gene-expression data

article

Clustering by soft-constraint affinity propagation: applications to gene-expression data

artículo científico publicado en 2007

Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1. ⬇️

artículo científico publicado en 2015

Coloring random graphs.

artículo científico publicado en 2002

Computational complexity arising from degree correlations in networks

artículo científico publicado en 2003

Computational modeling of phosphotransfer complexes in two-component signaling

artículo científico publicado en 2010

Core percolation and onset of complexity in boolean networks.

artículo científico publicado en 2006

Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes

artículo científico publicado en 2022

Direct coevolutionary couplings reflect biophysical residue interactions in proteins

artículo científico publicado en 2016

Direct coupling analysis for protein contact prediction.

artículo científico publicado en 2014

Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction

artículo científico publicado en 2015

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

artículo científico publicado en 2011

Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks

artículo científico publicado en 2011

Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes

artículo científico

Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners ⬇️

artículo científico publicado en 2014

FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution

artículo científico publicado en 2020

From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction

artículo científico publicado en 2013

From sequence variability to structural and functional prediction: modeling of homologous protein families

artículo científico publicado en 2017

Gene-network inference by message passing

Genomics-aided structure prediction

artículo científico publicado en 2012

Hiding solutions in random satisfiability problems: a statistical mechanics approach

artículo científico publicado en 2002

High-resolution protein complexes from integrating genomic information with molecular simulation

artículo científico publicado en 2009

Identification of direct residue contacts in protein-protein interaction by message passing

artículo científico publicado en 2008

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

artículo científico publicado en 2013

Improving landscape inference by integrating heterogeneous data in the inverse Ising problem ⬇️

artículo científico publicado en 2016

Inference algorithms for gene networks: a statistical mechanics analysis

article

Inference of direct residue contacts in two-component signaling

artículo científico publicado en 2010

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

artículo científico publicado en 2010

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon ⬇️

artículo científico publicado en 2016

Inter-residue, inter-protein and inter-family coevolution: bridging the scales.

artículo científico publicado en 2017

Inverse Statistical Physics of Protein Sequences: A Key Issues Review

artículo científico publicado en 2017

Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis

artículo científico publicado en 2017

Meet-U: Educating through research immersion.

artículo científico publicado en 2018

Message passing for vertex covers

artículo científico publicado en 2006

Multifractal analysis of the coupling space of feedforward neural networks

artículo científico publicado en 1996

Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria

artículo científico publicado en 2017

Number of Guards Needed by a Museum: A Phase Transition in Vertex Covering of Random Graphs

artículo científico publicado en 2000

On the properties of small-world network models

article

Perturbation biology: inferring signaling networks in cellular systems

artículo científico publicado en 2013

Phylogenetic correlations can suffice to infer protein partners from sequences

artículo científico publicado en 2019

Polynomial iterative algorithms for coloring and analyzing random graphs.

artículo científico publicado en 2003

Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching

artículo científico publicado en 2020

Propagation of external regulation and asynchronous dynamics in random Boolean networks

scientific article published on 01 June 2007

Selection of sequence motifs and generative Hopfield-Potts models for protein families

scientific article published on 01 September 2019

Simplest randomK-satisfiability problem

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis. ⬇️

artículo científico publicado en 2016

Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms

article

Statistical mechanics of combinatorial auctions

artículo científico publicado en 2006

Statistical mechanics of sparse generalization and graphical model selection

article published in 2009

Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis

artículo científico publicado en 2012

Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility

artículo científico publicado en 2019

The computational core and fixed point organization in Boolean networks

article published in 2006

The evolution of the temporal program of genome replication

artículo científico publicado en 2018

The evolution of the temporal program of genome replication

The importance of dilution in the inference of biological networks

Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs

artículo científico publicado en 2004

Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs

artículo científico publicado en 2001

Lista de obras de Martin Weigt

A ferromagnet with a glass transition

A multi-scale coevolutionary approach to predict interactions between protein domains

Aligning graphs and finding substructures by a cavity approach

An evolution-based model for designing chorismate mutase enzymes

Cavity approach to the random solid state

Classification and sparse-signature extraction from gene-expression data

Clustering by soft-constraint affinity propagation: applications to gene-expression data

Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1. ⬇️

Coloring random graphs.

Computational complexity arising from degree correlations in networks

Computational modeling of phosphotransfer complexes in two-component signaling

Core percolation and onset of complexity in boolean networks.

Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes

Direct coevolutionary couplings reflect biophysical residue interactions in proteins

Direct coupling analysis for protein contact prediction.

Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks

Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes

Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners ⬇️

FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution

From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction

From sequence variability to structural and functional prediction: modeling of homologous protein families

Gene-network inference by message passing

Genomics-aided structure prediction

Hiding solutions in random satisfiability problems: a statistical mechanics approach

High-resolution protein complexes from integrating genomic information with molecular simulation

Identification of direct residue contacts in protein-protein interaction by message passing

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

Improving landscape inference by integrating heterogeneous data in the inverse Ising problem ⬇️

Inference algorithms for gene networks: a statistical mechanics analysis

Inference of direct residue contacts in two-component signaling

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon ⬇️

Inter-residue, inter-protein and inter-family coevolution: bridging the scales.

Inverse Statistical Physics of Protein Sequences: A Key Issues Review

Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis

Meet-U: Educating through research immersion.

Message passing for vertex covers

Multifractal analysis of the coupling space of feedforward neural networks

Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria

Number of Guards Needed by a Museum: A Phase Transition in Vertex Covering of Random Graphs

On the properties of small-world network models

Perturbation biology: inferring signaling networks in cellular systems

Phylogenetic correlations can suffice to infer protein partners from sequences

Polynomial iterative algorithms for coloring and analyzing random graphs.

Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching

Propagation of external regulation and asynchronous dynamics in random Boolean networks

Selection of sequence motifs and generative Hopfield-Potts models for protein families

Simplest randomK-satisfiability problem

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis. ⬇️

Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms

Statistical mechanics of combinatorial auctions

Statistical mechanics of sparse generalization and graphical model selection

Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis

Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility

The computational core and fixed point organization in Boolean networks

The evolution of the temporal program of genome replication

The evolution of the temporal program of genome replication

The importance of dilution in the inference of biological networks

Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs

Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs