Lista de obras - Arjun Raj - Dominio Público Uruguay

Allele-specific RNA imaging shows that allelic imbalances can arise in tissues through transcriptional bursting

artículo científico publicado en 2019

ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification

artículo científico publicado en 2018

Control of somatic tissue differentiation by the long non-coding RNA TINCR.

artículo científico publicado en 2012

Dynamic enhancer-gene body contacts during transcription elongation

artículo científico publicado en 2015

Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping

artículo científico publicado en 2016

FISHing Out the Details of CRISPR Genome Tracks

artículo científico publicado en 2017

Gene regulation gravitates towards either addition or multiplication when combining the effects of two signals

artículo científico publicado en 2020

Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

artículo científico publicado en 2013

Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer

artículo científico publicado en 2011

Genetic screening for single-cell variability modulators driving therapy resistance

scientific article published on 04 January 2021

Global analysis of RNA secondary structure in two metazoans

artículo científico publicado en 2012

Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?

artículo científico publicado en 2015

Heterogeneous lineage marker expression in naive embryonic stem cells is mostly due to spontaneous differentiation

artículo científico publicado en 2015

Identification of a Natural Viral RNA Motif That Optimizes Sensing of Viral RNA by RIG-I.

artículo científico publicado en 2015

Imaging Single mRNA Molecules in Yeast

artículo científico publicado en 2010

Imaging individual mRNA molecules using multiple singly labeled probes

artículo científico publicado en 2008

Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a.

artículo científico publicado en 2014

LADL: light-activated dynamic looping for endogenous gene expression control

scientific article published on 24 June 2019

LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint

artículo científico publicado en 2014

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development

artículo científico publicado en 2014

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

artículo científico publicado en 2015

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

artículo científico publicado en 2009

Mechanism of mRNA transport in the nucleus

artículo científico publicado en 2005

Mitotic transcription and waves of gene reactivation during mitotic exit

artículo científico publicado en 2017

Molecular memoirs of a cellular family

artículo científico publicado en 2016

Multiplexed detection of viral infections using rapid in situ RNA analysis on a chip

artículo científico publicado en 2015

Nanoscale imaging of RNA with expansion microscopy

artículo científico publicado en 2016

Neutrophils and Ly6Chi monocytes collaborate in generating an optimal cytokine response that protects against pulmonary Legionella pneumophila infection

artículo científico publicado en 2017

Noise in gene expression determines cell fate in Bacillus subtilis

artículo científico publicado en 2007

Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila

artículo científico publicado en 2014

Overlapping cell population expression profiling and regulatory inference in C. elegans

artículo científico publicado en 2016

Quanti.us: a tool for rapid, flexible, crowd-based annotation of images

scientific article published on 31 July 2018

Quantitative assessment of ratiometric bimolecular beacons as a tool for imaging single engineered RNA transcripts and measuring gene expression in living cells

artículo científico publicado en 2013

RNA sequencing in situ

artículo científico publicado en 2014

Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance

artículo científico publicado en 2017

Remodeling of the collagen matrix in aging skin promotes melanoma metastasis and affects immune cell motility

scientific article published on 02 October 2018

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

artículo científico publicado en 2015

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

artículo científico publicado en 2015

Single Molecule Imaging of RNA In Situ

article

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

artículo científico publicado en 2015

Single-cell differences in matrix gene expression do not predict matrix deposition.

artículo científico publicado en 2016

Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation

artículo científico publicado en 2013

Single-molecule approaches to stochastic gene expression

artículo científico publicado en 2009

Social reprogramming in ants induces longevity-associated glia remodeling

artículo científico publicado en 2020

Spo0A~P imposes a temporal gate for the bimodal expression of competence in Bacillus subtilis.

artículo científico publicado en 2012

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

artículo científico publicado en 2014

Stochastic mRNA synthesis in mammalian cells

artículo científico publicado en 2006

The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries

artículo científico publicado en 2017

The Bicoid class homeodomain factors ceh-36/OTX and unc-30/PITX cooperate in C. elegans embryonic progenitor cells to regulate robust development

artículo científico publicado en 2015

The influence of chromosome flexibility on chromosome transport during anaphase A.

artículo científico publicado en 2006

The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan.

scientific article published on 15 August 2016

Time-Lapse Transcription

artículo científico publicado en 2011

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

artículo científico publicado en 2014

Transcriptional Bursting Explains the Noise-Versus-Mean Relationship in mRNA and Protein Levels.

artículo científico publicado en 2016

Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

Tumor endothelial marker 1-specific DNA vaccination targets tumor vasculature.

artículo científico publicado en 2014

Turbo FISH: a method for rapid single molecule RNA FISH.

artículo científico publicado en 2013

Variability in gene expression underlies incomplete penetrance

artículo científico publicado en 2010

Variability within rare cell states enables multiple paths toward drug resistance

artículo científico publicado en 2021

Visualization of lncRNA by single-molecule fluorescence in situ hybridization

artículo científico

Visualizing SNVs to quantify allele-specific expression in single cells

artículo científico publicado en 2013

Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant

artículo científico publicado en 2016

What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism

artículo científico publicado en 2016

linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis

scientific journal article

Lista de obras de Arjun Raj

Allele-specific RNA imaging shows that allelic imbalances can arise in tissues through transcriptional bursting

ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification

Control of somatic tissue differentiation by the long non-coding RNA TINCR.

Dynamic enhancer-gene body contacts during transcription elongation

Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping

FISHing Out the Details of CRISPR Genome Tracks

Gene regulation gravitates towards either addition or multiplication when combining the effects of two signals

Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer

Genetic screening for single-cell variability modulators driving therapy resistance

Global analysis of RNA secondary structure in two metazoans

Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?

Heterogeneous lineage marker expression in naive embryonic stem cells is mostly due to spontaneous differentiation

Identification of a Natural Viral RNA Motif That Optimizes Sensing of Viral RNA by RIG-I.

Imaging Single mRNA Molecules in Yeast

Imaging individual mRNA molecules using multiple singly labeled probes

Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a.

LADL: light-activated dynamic looping for endogenous gene expression control

LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Mechanism of mRNA transport in the nucleus

Mitotic transcription and waves of gene reactivation during mitotic exit

Molecular memoirs of a cellular family

Multiplexed detection of viral infections using rapid in situ RNA analysis on a chip

Nanoscale imaging of RNA with expansion microscopy

Neutrophils and Ly6Chi monocytes collaborate in generating an optimal cytokine response that protects against pulmonary Legionella pneumophila infection

Noise in gene expression determines cell fate in Bacillus subtilis

Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila

Overlapping cell population expression profiling and regulatory inference in C. elegans

Quanti.us: a tool for rapid, flexible, crowd-based annotation of images

Quantitative assessment of ratiometric bimolecular beacons as a tool for imaging single engineered RNA transcripts and measuring gene expression in living cells

RNA sequencing in situ

Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance

Remodeling of the collagen matrix in aging skin promotes melanoma metastasis and affects immune cell motility

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

Single Molecule Imaging of RNA In Situ

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

Single-cell differences in matrix gene expression do not predict matrix deposition.

Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation

Single-molecule approaches to stochastic gene expression

Social reprogramming in ants induces longevity-associated glia remodeling

Spo0A~P imposes a temporal gate for the bimodal expression of competence in Bacillus subtilis.

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

Stochastic mRNA synthesis in mammalian cells

The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries

The Bicoid class homeodomain factors ceh-36/OTX and unc-30/PITX cooperate in C. elegans embryonic progenitor cells to regulate robust development

The influence of chromosome flexibility on chromosome transport during anaphase A.

The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan.

Time-Lapse Transcription

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

Transcriptional Bursting Explains the Noise-Versus-Mean Relationship in mRNA and Protein Levels.

Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

Tumor endothelial marker 1-specific DNA vaccination targets tumor vasculature.

Turbo FISH: a method for rapid single molecule RNA FISH.

Variability in gene expression underlies incomplete penetrance

Variability within rare cell states enables multiple paths toward drug resistance

Visualization of lncRNA by single-molecule fluorescence in situ hybridization

Visualizing SNVs to quantify allele-specific expression in single cells

Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant

What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism

linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis