Lista de obras - Eduardo Eyras - Dominio Público Uruguay

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing

artículo científico publicado en 2015

A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins

artículo científico publicado en 2015

A global regulatory mechanism for activating an exon network required for neurogenesis

artículo científico publicado en 2014

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells

artículo científico publicado en 2015

ASTD: The Alternative Splicing and Transcript Diversity database

artículo científico publicado en 2008

An overview of Ensembl

artículo científico publicado en 2004

Approaches to link RNA secondary structures with splicing regulation

artículo científico publicado en 2014

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells

artículo científico publicado en 2014

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

artículo científico

CD133-directed CAR T-cells for MLL leukemia: on-target, off-tumor myeloablative toxicity

article

Chromatin and Alternative Splicing

artículo científico publicado en 2010

Co-evolution of the branch site and SR proteins in eukaryotes

article published in 2008

Combined analysis of genome sequencing and RNA-motifs reveals novel damaging non-coding mutations in human tumors

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes

artículo científico publicado en 2005

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

artículo científico publicado en 2009

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

artículo científico publicado en 2012

Databases and resources for human small non-coding RNAs ⬇️

artículo científico publicado el 1 de marzo de 2011

Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing

artículo científico publicado en 2011

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

artículo científico publicado en 2015

Differentiated evolutionary rates in alternative exons and the implications for splicing regulation

artículo científico publicado en 2006

Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression

artículo científico publicado en 2011

Drosha regulates gene expression independently of RNA cleavage function.

artículo científico publicado en 2013

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing

artículo científico publicado en 2016

EGASP: the human ENCODE Genome Annotation Assessment Project

artículo científico publicado en 2006

ESTGenes: alternative splicing from ESTs in Ensembl

artículo científico publicado en 2004

Ensembl 2002: accommodating comparative genomics

artículo científico publicado en 2003

Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line

artículo científico publicado en 2004

Exon creation and establishment in human genes

artículo científico publicado en 2008

Gene finding in the chicken genome

artículo científico publicado en 2005

Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors.

artículo científico publicado en 2018

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

artículo científico publicado en 2004

Genome-wide association between branch point properties and alternative splicing

artículo científico publicado en 2010

Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling

artículo científico publicado en 2012

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer

artículo científico publicado en 2021

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

artículo científico publicado en 2007

Initial sequencing and comparative analysis of the mouse genome

artículo científico publicado en 2002

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

artículo científico publicado en 2004

Intersections involving monopoles and waves in eleven dimensions

article

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

artículo científico publicado en 2007

Key contribution of CPEB4-mediated translational control to cancer progression

artículo científico publicado en 2011

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

artículo científico publicado en 2016

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

artículo científico publicado en 2007

Leveraging transcript quantification for fast computation of alternative splicing profiles

artículo científico publicado en 2015

Methods to study splicing from high-throughput RNA sequencing data

artículo científico publicado en 2014

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

artículo científico

Nucleosome-driven transcription factor binding and gene regulation

artículo científico publicado en 2012

Predictive models of gene regulation from high-throughput epigenomics data

artículo científico publicado en 2012

Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep Sequencing

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data

artículo científico publicado en 2011

RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation

artículo científico publicado en 2013

RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae

artículo científico publicado en 2012

Regulation of FAS exon definition and apoptosis by the Ewing sarcoma protein

artículo científico publicado en 2014

ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

scientific article published on 29 November 2019

Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

scientific article published on 14 April 2020

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

artículo científico publicado en 2018

SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

artículo científico publicado en 2018

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

artículo científico publicado en 2004

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

artículo científico publicado en 2011

Systematic Analysis of Splice-Site-Creating Mutations in Cancer.

artículo científico publicado en 2018

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing

artículo científico publicado en 2021

Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1.

artículo científico publicado en 2017

The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells

artículo científico publicado en 2013

The BioMart community portal: an innovative alternative to large, centralized data repositories

artículo científico publicado en 2015

The Ensembl genome database project

artículo científico publicado en 2002

The Functional Impact of Alternative Splicing in Cancer

artículo científico publicado en 2017

The Microprocessor controls the activity of mammalian retrotransposons

artículo científico publicado en 2013

The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development.

scientific article published on 20 October 2016

The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators

artículo científico publicado en 2016

The discovery potential of RNA processing profiles

The discovery potential of RNA processing profiles.

artículo científico publicado en 2017

The functional impact of alternative splicing in cancer

The genome sequence of taurine cattle: a window to ruminant biology and evolution

artículo científico publicado en 2009

The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution

artículo científico publicado en 2009

The prognostic potential of alternative transcript isoforms across human tumors

artículo científico publicado en 2016

The prognostic potential of alternative transcript isoforms across human tumors

The translational landscape of the splicing factor SRSF1 and its role in mitosis.

artículo científico publicado en 2014

Use of ChIP-Seq data for the design of a multiple promoter-alignment method

artículo científico publicado en 2012

Lista de obras de Eduardo Eyras

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing

A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins

A global regulatory mechanism for activating an exon network required for neurogenesis

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells

ASTD: The Alternative Splicing and Transcript Diversity database

An overview of Ensembl

Approaches to link RNA secondary structures with splicing regulation

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

CD133-directed CAR T-cells for MLL leukemia: on-target, off-tumor myeloablative toxicity

Chromatin and Alternative Splicing

Co-evolution of the branch site and SR proteins in eukaryotes

Combined analysis of genome sequencing and RNA-motifs reveals novel damaging non-coding mutations in human tumors

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

Databases and resources for human small non-coding RNAs ⬇️

Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

Differentiated evolutionary rates in alternative exons and the implications for splicing regulation

Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression

Drosha regulates gene expression independently of RNA cleavage function.

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing

EGASP: the human ENCODE Genome Annotation Assessment Project

ESTGenes: alternative splicing from ESTs in Ensembl

Ensembl 2002: accommodating comparative genomics

Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line

Exon creation and establishment in human genes

Gene finding in the chicken genome

Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Genome-wide association between branch point properties and alternative splicing

Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Initial sequencing and comparative analysis of the mouse genome

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Intersections involving monopoles and waves in eleven dimensions

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Key contribution of CPEB4-mediated translational control to cancer progression

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

Leveraging transcript quantification for fast computation of alternative splicing profiles

Methods to study splicing from high-throughput RNA sequencing data

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

Nucleosome-driven transcription factor binding and gene regulation

Predictive models of gene regulation from high-throughput epigenomics data

Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep Sequencing

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data

RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation

RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae

Regulation of FAS exon definition and apoptosis by the Ewing sarcoma protein

ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

Systematic Analysis of Splice-Site-Creating Mutations in Cancer.

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing

Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1.

The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells

The BioMart community portal: an innovative alternative to large, centralized data repositories

The Ensembl genome database project

The Functional Impact of Alternative Splicing in Cancer

The Microprocessor controls the activity of mammalian retrotransposons

The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development.

The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators

The discovery potential of RNA processing profiles

The discovery potential of RNA processing profiles.

The functional impact of alternative splicing in cancer

The genome sequence of taurine cattle: a window to ruminant biology and evolution

The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution

The prognostic potential of alternative transcript isoforms across human tumors

The prognostic potential of alternative transcript isoforms across human tumors

The translational landscape of the splicing factor SRSF1 and its role in mitosis.

Use of ChIP-Seq data for the design of a multiple promoter-alignment method