Lista de obras - Michael M. Hoffman - Dominio Público Uruguay

A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data

artículo científico publicado en 2010

AANT: the Amino Acid-Nucleotide Interaction Database

artículo científico publicado en 2004

An effective model for natural selection in promoters

artículo científico publicado en 2010

Aspirin, NSAIDs, and colorectal cancer: possible involvement in an insulin-related pathway

artículo científico publicado en 2004

Associations among IRS1, IRS2, IGF1, and IGFBP3 genetic polymorphisms and colorectal cancer.

artículo científico publicado en 2004

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

artículo científico publicado en 2012

ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data

artículo científico publicado en 2016

Classification and interaction in random forests

artículo científico publicado en 2018

Colorectal tumor molecular phenotype and miRNA: expression profiles and prognosis

artículo científico publicado en 2016

Comparative analysis of metazoan chromatin organization

artículo científico publicado en 2014

DNAmod: the DNA modification database

article published in 2019

Determining the epigenome using DNA alone

Dietary calcium, vitamin D, VDR genotypes and colorectal cancer

artículo científico publicado en 2004

Estimating the neutral rate of nucleotide substitution using introns

artículo científico publicado en 2007

Exploratory analysis of genomic segmentations with Segtools

artículo científico publicado en 2011

Extending reference assembly models

artículo científico publicado en 2015

Functional annotation of human long noncoding RNAs via molecular phenotyping

artículo científico publicado en 2020

GA4GH: International policies and standards for data sharing across genomic research and healthcare

artículo científico publicado en 2021

Genome Informatics 2016.

artículo científico publicado en 2017

Integrative annotation of chromatin elements from ENCODE data

artículo científico publicado en 2012

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

artículo científico publicado en 2015

Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

artículo científico publicado en 2019

MicroRNA profiles in colorectal carcinomas, adenomas and normal colonic mucosa: variations in miRNA expression and disease progression

artículo científico publicado en 2016

MicroRNAs and colon and rectal cancer: Differential expression by tumor location and subtype ⬇️

artículo científico publicado el 16 de diciembre de 2010

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

artículo científico publicado en 2024

Mutation analysis of adenomas and carcinomas of the colon: Early and late drivers

artículo científico publicado en 2018

Opportunities and obstacles for deep learning in biology and medicine.

artículo científico publicado en 2018

Reproducibility standards for machine learning in the life sciences

artículo científico publicado en 2021

Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns

artículo científico publicado en 2021

Segway 2.0: Gaussian mixture models and minibatch training

Semi-automated genome annotation using epigenomic data and Segway

Sensitive tumour detection and classification using plasma cell-free DNA methylomes

artículo científico publicado en 2018

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

artículo científico publicado en 2004

Site-specific associations between miRNA expression and survival in colorectal cancer cases

artículo científico publicado en 2016

Statistical Inference, Learning and Models in Big Data

The Genomedata format for storing large-scale functional genomics data

artículo científico publicado en 2010

Transparency and reproducibility in artificial intelligence

artículo científico publicado en 2020

Umap and Bismap: quantifying genome and methylome mappability

artículo científico publicado en 2018

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

artículo científico publicado en 2012

Lista de obras de Michael M. Hoffman

A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data

AANT: the Amino Acid-Nucleotide Interaction Database

An effective model for natural selection in promoters

Aspirin, NSAIDs, and colorectal cancer: possible involvement in an insulin-related pathway

Associations among IRS1, IRS2, IGF1, and IGFBP3 genetic polymorphisms and colorectal cancer.

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data

Classification and interaction in random forests

Colorectal tumor molecular phenotype and miRNA: expression profiles and prognosis

Comparative analysis of metazoan chromatin organization

DNAmod: the DNA modification database

DNAmod: the DNA modification database

Determining the epigenome using DNA alone

Dietary calcium, vitamin D, VDR genotypes and colorectal cancer

Estimating the neutral rate of nucleotide substitution using introns

Exploratory analysis of genomic segmentations with Segtools

Extending reference assembly models

Functional annotation of human long noncoding RNAs via molecular phenotyping

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Genome Informatics 2016.

Integrative annotation of chromatin elements from ENCODE data

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

MicroRNA profiles in colorectal carcinomas, adenomas and normal colonic mucosa: variations in miRNA expression and disease progression

MicroRNAs and colon and rectal cancer: Differential expression by tumor location and subtype ⬇️

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Mutation analysis of adenomas and carcinomas of the colon: Early and late drivers

Opportunities and obstacles for deep learning in biology and medicine.

Reproducibility standards for machine learning in the life sciences

Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns

Segway 2.0: Gaussian mixture models and minibatch training

Semi-automated genome annotation using epigenomic data and Segway

Sensitive tumour detection and classification using plasma cell-free DNA methylomes

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Site-specific associations between miRNA expression and survival in colorectal cancer cases

Statistical Inference, Learning and Models in Big Data

The Genomedata format for storing large-scale functional genomics data

Top considerations for creating bioinformatics software documentation

Transparency and reproducibility in artificial intelligence

Umap and Bismap: quantifying genome and methylome mappability

Umap and Bismap: quantifying genome and methylome mappability

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome