Lista de obras - Francisco Prosdocimi - Dominio Público Uruguay

A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni

artículo científico publicado en 2013

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel Limnoperna fortunei ⬇️

artículo científico publicado en 2017

A neutral evolution test derived from a theoretical amino acid substitution model

artículo científico publicado en 2019

A procedure to recruit members to enlarge protein family databases--the building of UECOG (UniRef-Enriched COG Database) as a model

article

A set of amino acids found to occur more frequently in human and fly than in plant and yeast proteomes consists of non-essential amino acids.

artículo científico publicado en 2006

Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data

artículo científico publicado en 2019

Accessing optimal primer distance from insert.

artículo científico publicado en 2005

Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution

artículo científico publicado en 2011

Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer

artículo científico publicado en 2018

Barcoding the Neotropical freshwater fish fauna using a new pair of universal COI primers with a discussion of primer dimers and M13 primer tails

scientific article published on 07 February 2019

Be Introduced to the First Universal Common Ancestor (FUCA): The Great-Grandmother of LUCA (Last Universal Common Ancestor)

Brazilian Bothrops diporus, in fact a lineage of Bothrops pubescens: Mitogenomic, venomic and ontogenetic studies

artículo científico publicado en 2020

Buds of the tree: the highway to the last universal common ancestor

Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages

artículo científico publicado en 2002

Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages

article

Comparative genomics and phylogenomics of Trichostrongyloidea mitochondria reveal insights for molecular diagnosis and evolutionary biology of nematode worms

scholarly article by Livia Loiola dos Santos et al published December 2017 in Gene reports

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes

scientific article published on 01 July 2018

Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a Neotropical rupiculous species

artículo científico publicado en 2015

Complete mitochondrial genome of the brown mussel Perna perna (Bivalve, Mytilidae).

artículo científico publicado en 2015

Complete mitochondrial genome of the versicoloured emerald hummingbird Amazilia versicolor, a polymorphic species

artículo científico publicado en 2015

Conceptual challenges for the emergence of the biological system: Cell theory and self-replication

scientific article published on 30 July 2018

Controversies in modern evolutionary biology: the imperative for error detection and quality control

artículo científico publicado en 2012

Copaifera langsdorffii Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

Copaifera langsdorffii Novel Putative lncRNA: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

Correction for Mesquita et al., Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

article published in the Proceedings of the National Academy of Sciences of the United States of America

DNA barcoding of the rodent genus Oligoryzomys (Cricetidae: Sigmodontinae): mitogenomic-anchored database and identification of nuclear mitochondrial translocations (Numts)

artículo científico publicado en 2019

Deep Ancestry of Orthologs and a Theoretical, Gradualist Perspective for the Formation of the LUCA’s (Last Universal Common Ancestor) Genome

Dense sampling of bird diversity increases power of comparative genomics

artículo científico publicado en 2020

Diet as a Pressure on the Amino Acid Content of Proteomes

Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences.

artículo científico publicado en 2007

Efficient secondary database driven annotation using model organism sequences.

artículo científico publicado en 2006

Entering the labyrinth: A hypothesis about the emergence of metabolism from protobiotic routes

artículo científico publicado en 2022

Essential amino acid usage and evolutionary nutrigenomics of eukaryotes--insights into the differential usage of amino acids in protein domains and extra-domains

artículo científico publicado en 2008

Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.

artículo científico publicado en 2004

Evidences for Viral Strain Selection in Late Stages of HIV Infection: An Analysis of Vpu Alleles

article

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data

artículo científico publicado en 2011

Gene discovery through transcriptome sequencing for the invasive mussel Limnoperna fortunei ⬇️

artículo científico publicado en 2014

Genetic algorithm for analysis of mutations in Parkinson's disease

artículo científico publicado en 2005

Genetic diversity and aquaculture conservation for a threatened Neotropical catfish

artículo científico publicado en 2020

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

artículo científico publicado en 2015

In silico phylogenomics using complete genomes: a case study on the evolution of hominoids

artículo científico publicado en 2016

Initial implementation of a comparative data analysis ontology

artículo científico publicado en 2009

Is it possible that cells have had more than one origin?

article published in 2021

Knowledge Standardization in Evolutionary Biology: The Comparative Data Analysis Ontology

scholarly article published 2009

LEARNING COMPREHENSIBLE CLASSIFICATION RULES FROM GENE EXPRESSION DATA USING GENETIC PROGRAMMING AND BIOLOGICAL ONTOLOGIES

article

Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses

artículo científico publicado en 2014

MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

scientific article published on 03 April 2020

New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis

artículo científico publicado en 2013

No budget mitogenomics: Assembling 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data

Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

article published in 2018

Nucleic acid binding properties of SmZF1, a zinc finger protein of Schistosoma mansoni.

artículo científico publicado en 2004

Organic Codes: A Unifying Concept for Life

Oxidation of monoterpenes in Protium heptaphyllum oleoresins

artículo científico publicado en 2017

Parrot Genomes and the Evolution of Heightened Longevity and Cognition

artículo científico publicado en 2018

Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

scientific article published in 2022

Prebiotic chemical refugia: multifaceted scenario for the formation of biomolecules in primitive Earth

artículo científico publicado en 2022

Proceedings of the 4th World Conference on Research Integrity

Protein families, natural history and biotechnological aspects of spider silk

artículo científico publicado en 2012

Sequence variations of Env signal peptide alleles in different clinical stages of HIV infection.

artículo científico publicado en 2011

Sex-biased gene flow in African Americans but not in American Caucasians

artículo científico publicado en 2007

Spinning gland transcriptomics from two main clades of spiders (order: Araneae)--insights on their molecular, anatomical and behavioral evolution

artículo científico publicado en 2011

Survey of genome organization and gene content of Corynebacterium pseudotuberculosis

artículo científico publicado en 2009

Symbiont modulates expression of specific gene categories in Angomonas deanei

artículo científico publicado en 2016

The Ancient History of Peptidyl Transferase Center Formation as Told by Conservation and Information Analyses

artículo científico publicado en 2020

The Genetics of the Golden Mussel (Limnoperna fortunei): Are Genes Related to Invasiveness?

article

The Theory of Chemical Symbiosis: A Margulian View for the Emergence of Biological Systems (Origin of Life)

artículo científico publicado en 2020

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

artículo científico publicado en 2015

The complete mitochondrial genome of the golden mussel Limnoperna fortunei and comparative mitogenomics of Mytilidae

artículo científico publicado en 2015

The complete mitochondrial genome of the ruby-topaz hummingbird Chrysolampis mosquitus through Illumina sequencing

artículo científico publicado en 2014

The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing

artículo científico publicado en 2014

The complete mitochondrial genome of the subsocial cockroach <i>Nauphoeta cinerea</i> and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies

artículo científico publicado en 2017

The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea

artículo científico publicado en 2016

The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae).

artículo científico publicado en 2011

The genome of Anopheles darlingi, the main neotropical malaria vector

artículo científico publicado en 2013

The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G + T content?

artículo científico publicado en 2017

Transcriptomic and proteomic analysis from black widow spider venom (Latrodectus curacaviensis)

artículo científico publicado en 2020

Two Dogmas for the Emergence of Biological Systems: Cell Theory and Self-Replication

Viruses as a survival strategy in the armory of life

scientific article published on 14 October 2019

Whole-genome analyses resolve early branches in the tree of life of modern birds

artículo científico publicado en 2014

Lista de obras de Francisco Prosdocimi

A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel Limnoperna fortunei ⬇️

A neutral evolution test derived from a theoretical amino acid substitution model

A procedure to recruit members to enlarge protein family databases--the building of UECOG (UniRef-Enriched COG Database) as a model

A set of amino acids found to occur more frequently in human and fly than in plant and yeast proteomes consists of non-essential amino acids.

Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data

Accessing optimal primer distance from insert.

Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution

Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer

Barcoding the Neotropical freshwater fish fauna using a new pair of universal COI primers with a discussion of primer dimers and M13 primer tails

Be Introduced to the First Universal Common Ancestor (FUCA): The Great-Grandmother of LUCA (Last Universal Common Ancestor)

Brazilian Bothrops diporus, in fact a lineage of Bothrops pubescens: Mitogenomic, venomic and ontogenetic studies

Buds of the tree: the highway to the last universal common ancestor

Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages

Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages

Comparative genomics and phylogenomics of Trichostrongyloidea mitochondria reveal insights for molecular diagnosis and evolutionary biology of nematode worms

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes

Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a Neotropical rupiculous species

Complete mitochondrial genome of the brown mussel Perna perna (Bivalve, Mytilidae).

Complete mitochondrial genome of the versicoloured emerald hummingbird Amazilia versicolor, a polymorphic species

Conceptual challenges for the emergence of the biological system: Cell theory and self-replication

Controversies in modern evolutionary biology: the imperative for error detection and quality control

Copaifera langsdorffii Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

Copaifera langsdorffii Novel Putative lncRNA: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

Correction for Mesquita et al., Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

DNA barcoding of the rodent genus Oligoryzomys (Cricetidae: Sigmodontinae): mitogenomic-anchored database and identification of nuclear mitochondrial translocations (Numts)

Deep Ancestry of Orthologs and a Theoretical, Gradualist Perspective for the Formation of the LUCA’s (Last Universal Common Ancestor) Genome

Dense sampling of bird diversity increases power of comparative genomics

Diet as a Pressure on the Amino Acid Content of Proteomes

Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences.

Efficient secondary database driven annotation using model organism sequences.

Entering the labyrinth: A hypothesis about the emergence of metabolism from protobiotic routes

Essential amino acid usage and evolutionary nutrigenomics of eukaryotes--insights into the differential usage of amino acids in protein domains and extra-domains

Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.

Evidences for Viral Strain Selection in Late Stages of HIV Infection: An Analysis of Vpu Alleles

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data

Gene discovery through transcriptome sequencing for the invasive mussel Limnoperna fortunei ⬇️

Genetic algorithm for analysis of mutations in Parkinson's disease

Genetic diversity and aquaculture conservation for a threatened Neotropical catfish

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

In silico phylogenomics using complete genomes: a case study on the evolution of hominoids

Initial implementation of a comparative data analysis ontology

Is it possible that cells have had more than one origin?

Knowledge Standardization in Evolutionary Biology: The Comparative Data Analysis Ontology

LEARNING COMPREHENSIBLE CLASSIFICATION RULES FROM GENE EXPRESSION DATA USING GENETIC PROGRAMMING AND BIOLOGICAL ONTOLOGIES

Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses

MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis

No budget mitogenomics: Assembling 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data

No budget mitogenomics: Assembling 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data

Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes

Nucleic acid binding properties of SmZF1, a zinc finger protein of Schistosoma mansoni.

Organic Codes: A Unifying Concept for Life

Oxidation of monoterpenes in Protium heptaphyllum oleoresins

Parrot Genomes and the Evolution of Heightened Longevity and Cognition

Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

Prebiotic chemical refugia: multifaceted scenario for the formation of biomolecules in primitive Earth

Proceedings of the 4th World Conference on Research Integrity

Protein families, natural history and biotechnological aspects of spider silk

Sequence variations of Env signal peptide alleles in different clinical stages of HIV infection.

Sex-biased gene flow in African Americans but not in American Caucasians

Spinning gland transcriptomics from two main clades of spiders (order: Araneae)--insights on their molecular, anatomical and behavioral evolution

Survey of genome organization and gene content of Corynebacterium pseudotuberculosis

Symbiont modulates expression of specific gene categories in Angomonas deanei

The Ancient History of Peptidyl Transferase Center Formation as Told by Conservation and Information Analyses

The Genetics of the Golden Mussel (Limnoperna fortunei): Are Genes Related to Invasiveness?

The Theory of Chemical Symbiosis: A Margulian View for the Emergence of Biological Systems (Origin of Life)

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

The complete mitochondrial genome of the golden mussel Limnoperna fortunei and comparative mitogenomics of Mytilidae

The complete mitochondrial genome of the ruby-topaz hummingbird Chrysolampis mosquitus through Illumina sequencing

The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing

The complete mitochondrial genome of the subsocial cockroach <i>Nauphoeta cinerea</i> and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies

The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea

The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae).

The genome of Anopheles darlingi, the main neotropical malaria vector

The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G + T content?

Transcriptomic and proteomic analysis from black widow spider venom (Latrodectus curacaviensis)

Two Dogmas for the Emergence of Biological Systems: Cell Theory and Self-Replication

Viruses as a survival strategy in the armory of life