Lista de obras - Terrence S. Furey - Dominio Público Uruguay

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

artículo científico publicado en 2010

A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease

artículo científico publicado en 2009

A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function

artículo científico publicado en 2013

A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

artículo científico publicado en 2012

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.

artículo científico publicado en 2015

A physical map of the human genome

artículo científico publicado en 2001

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning

artículo científico publicado en 2012

Abstract B44: Chromatin structure impacts androgen receptor transcriptional specificity in prostate cancer cell lines

Allele-specific and heritable chromatin signatures in humans

artículo científico publicado en 2010

Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses

artículo científico publicado en 2016

Analysis of complex disease association and linkage studies using the University of California Santa Cruz Genome Browser

artículo científico publicado en 2009

Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain

artículo científico publicado en 2010

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

artículo científico publicado en 2011

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

artículo científico publicado en 2012

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma

artículo científico publicado en 2014

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

artículo científico publicado en 2012

Colonic Epithelial miR-31 Associates with the Development of Crohn's Phenotypes

Comparative recombination rates in the rat, mouse, and human genomes

scientific article published on April 2004

Comparison of human (and other) genome browsers

artículo científico publicado en 2006

Correcting nucleotide-specific biases in high-throughput sequencing data

artículo científico publicado en 2017

Correction: A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

artículo científico publicado en 2013

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

artículo científico publicado en 2003

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

artículo científico publicado en 2013

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2

artículo científico publicado en 2009

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter

artículo científico publicado en 2016

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

artículo científico publicado en 2011

Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation

article

Evidence of influence of genomic DNA sequence on human X chromosome inactivation

artículo científico publicado en 2006

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection

artículo científico publicado en 2012

F-Seq: a feature density estimator for high-throughput sequence tags

artículo científico publicado en 2008

GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data

artículo científico publicado en 2014

Generation and annotation of the DNA sequences of human chromosomes 2 and 4

artículo científico publicado en 2005

Genetic and epigenetic determinants of inter-individual variability in responses to toxicants

article

Genetics. Genetics driving epigenetics.

artículo científico publicado en 2013

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

artículo científico publicado en 2004

Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts

artículo científico publicado en 2006

Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells.

artículo científico

Genomic sweeping for hypermethylated genes

artículo científico publicado en 2006

Global Epigenomic Analysis of Primary Human Pancreatic Islets Provides Insights into Type 2 Diabetes Susceptibility Loci

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

artículo científico publicado en 2010

Heritable individual-specific and allele-specific chromatin signatures in humans

artículo científico publicado en 2010

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

artículo científico publicado en 2011

High-resolution mapping and characterization of open chromatin across the genome

artículo científico publicado en 2008

High-resolution mapping studies of chromatin and gene regulatory elements

artículo científico publicado en 2009

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

artículo científico publicado en 2007

Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays

scientific article published on 15 October 2012

Increased Colonic Expression of ACE2 Associates with Poor Prognosis in Crohn's disease

scientific article published on 24 November 2020

Initial sequencing and analysis of the human genome

artículo científico publicado en 2001

Initial sequencing and comparative analysis of the mouse genome

artículo científico publicado en 2002

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets

artículo científico publicado en 2011

Integration of cytogenetic landmarks into the draft sequence of the human genome

artículo científico publicado en 2001

Integration of the cytogenetic map with the draft human genome sequence

artículo científico publicado en 2003

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

artículo científico publicado en 2020

Knowledge-based analysis of microarray gene expression data by using support vector machines

artículo científico publicado en 2000

MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility

artículo científico publicado en 2015

Molecular classification of Crohn's disease reveals two clinically relevant subtypes.

artículo científico publicado en 2016

Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes

artículo científico publicado en 2012

New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk ⬇️

artículo científico publicado en 2016

Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations

artículo científico publicado en 2014

O-004 Analysis of Chromatin and Transcriptional Profiles in Crohnʼs Disease Reveals Molecular Subclasses and Highlights Functional Regulatory Regions Implicated in Disease

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

artículo científico publicado en 2011

P-193 A Distinct Microbiome Signature Characterizes Patients with Penetrating and Fistulizing Crohnʼs Disease

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

artículo científico publicado en 2013

Redefining the IBDs using genome-scale molecular phenotyping

scientific article published on 01 May 2019

Removing reference mapping biases using limited or no genotype data identifies allelic differences in protein binding at disease-associated loci

artículo científico publicado en 2015

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

artículo científico publicado en 2004

Support vector machine classification and validation of cancer tissue samples using microarray expression data

artículo científico publicado en 2000

The DNA sequence and biology of human chromosome 19

artículo científico publicado en 2004

The DNA sequence of human chromosome 7

artículo científico publicado en 2003

The UCSC Genome Browser Database: update 2006

artículo científico publicado en 2006

The accessible chromatin landscape of the human genome

artículo científico publicado en 2012

The human genome browser at UCSC

artículo científico publicado en 2002

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

artículo científico publicado en 2004

The structure and evolution of centromeric transition regions within the human genome

artículo científico publicado en 2004

Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription

artículo científico publicado en 2018

Tu1927 Genetically Driven Chromatin Organization Identifies Regulatory SNPs Associated With Crohn's Disease

Variation in DNA-Damage Responses to an Inhalational Carcinogen (1,3-Butadiene) in Relation to Strain-Specific Differences in Chromatin Accessibility and Gene Transcription Profiles in C57BL/6J and CAST/EiJ Mice

artículo científico publicado en 2017

Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects

scientific article published on 24 October 2013

Lista de obras de Terrence S. Furey

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease

A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function

A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.

A physical map of the human genome

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning

Abstract B44: Chromatin structure impacts androgen receptor transcriptional specificity in prostate cancer cell lines

Allele-specific and heritable chromatin signatures in humans

Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses

Analysis of complex disease association and linkage studies using the University of California Santa Cruz Genome Browser

Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

Colonic Epithelial miR-31 Associates with the Development of Crohn's Phenotypes

Comparative recombination rates in the rat, mouse, and human genomes

Comparison of human (and other) genome browsers

Correcting nucleotide-specific biases in high-throughput sequencing data

Correction: A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation

Evidence of influence of genomic DNA sequence on human X chromosome inactivation

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection

F-Seq: a feature density estimator for high-throughput sequence tags

GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data

Generation and annotation of the DNA sequences of human chromosomes 2 and 4

Genetic and epigenetic determinants of inter-individual variability in responses to toxicants

Genetics. Genetics driving epigenetics.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts

Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells.

Genomic sweeping for hypermethylated genes

Global Epigenomic Analysis of Primary Human Pancreatic Islets Provides Insights into Type 2 Diabetes Susceptibility Loci

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

Heritable individual-specific and allele-specific chromatin signatures in humans

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

High-resolution mapping and characterization of open chromatin across the genome

High-resolution mapping studies of chromatin and gene regulatory elements

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays

Increased Colonic Expression of ACE2 Associates with Poor Prognosis in Crohn's disease

Initial sequencing and analysis of the human genome

Initial sequencing and comparative analysis of the mouse genome

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets

Integration of cytogenetic landmarks into the draft sequence of the human genome

Integration of the cytogenetic map with the draft human genome sequence

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

Knowledge-based analysis of microarray gene expression data by using support vector machines

MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility

Molecular classification of Crohn's disease reveals two clinically relevant subtypes.

Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes

New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk ⬇️

Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations

O-004 Analysis of Chromatin and Transcriptional Profiles in Crohnʼs Disease Reveals Molecular Subclasses and Highlights Functional Regulatory Regions Implicated in Disease

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

P-193 A Distinct Microbiome Signature Characterizes Patients with Penetrating and Fistulizing Crohnʼs Disease

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

Redefining the IBDs using genome-scale molecular phenotyping

Removing reference mapping biases using limited or no genotype data identifies allelic differences in protein binding at disease-associated loci

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Support vector machine classification and validation of cancer tissue samples using microarray expression data

The DNA sequence and biology of human chromosome 19

The DNA sequence of human chromosome 7

The UCSC Genome Browser Database: update 2006

The accessible chromatin landscape of the human genome

The human genome browser at UCSC

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

The structure and evolution of centromeric transition regions within the human genome

Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription

Tu1927 Genetically Driven Chromatin Organization Identifies Regulatory SNPs Associated With Crohn's Disease

Variation in DNA-Damage Responses to an Inhalational Carcinogen (1,3-Butadiene) in Relation to Strain-Specific Differences in Chromatin Accessibility and Gene Transcription Profiles in C57BL/6J and CAST/EiJ Mice

Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects