Lista de obras - Pavel Tomancak - Dominio Público Uruguay

A genome-wide resource for the analysis of protein localisation in Drosophila

artículo científico publicado en 2016

A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis

artículo científico publicado en 2016

A toolkit for high-throughput, cross-species gene engineering in Drosophila

artículo científico publicado en 2009

Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus.

artículo científico publicado en 2011

An adaptive threshold in mammalian neocortical evolution

artículo científico publicado en 2014

An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes

artículo científico publicado en 2010

An automated workflow for parallel processing of large multiview SPIM recordings

artículo científico publicado en 2015

An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis

artículo científico publicado en 2012

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

artículo científico publicado en 2010

An objective comparison of cell-tracking algorithms.

artículo científico publicado en 2017

Analysis of Actomyosin Dynamics at Local Cellular and Tissue Scales Using Time-lapse Movies of Cultured Drosophila Egg Chambers

artículo científico publicado en 2019

Assessing phototoxicity in live fluorescence imaging.

artículo científico publicado en 2017

Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.

scientific article published on 27 March 2019

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

BigDataViewer: visualization and processing for large image data sets

artículo científico publicado en 2015

Bioimage Informatics in the context of Drosophila research

artículo científico

Biological imaging software tools

artículo científico publicado en 2012

CATMAID: collaborative annotation toolkit for massive amounts of image data

artículo científico publicado en 2009

CLIJ: GPU-accelerated image processing for everyone

artículo científico publicado en 2020

Cell communication in the blink of an eye

scientific article published on 01 July 2019

Comment on "Cortical folding scales universally with surface area and thickness, not number of neurons".

artículo científico publicado en 2016

Computational identification of Drosophila microRNA genes

artículo científico publicado en 2003

Content-aware image restoration: pushing the limits of fluorescence microscopy

scientific article published on 26 November 2018

Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch

scientific article published on 25 January 2019

Current challenges in open-source bioimage informatics

artículo científico publicado en 2012

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

artículo científico publicado en 2005

Ectopic expression of S28A-mutated Histone H3 modulates longevity, stress resistance and cardiac function in Drosophila.

artículo científico publicado en 2018

Efficient Bayesian-based multiview deconvolution

artículo científico publicado en 2014

Elastic volume reconstruction from series of ultra-thin microscopy sections.

artículo científico publicado en 2012

Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila

artículo científico publicado en 2015

Epithelial rotation is preceded by planar symmetry breaking of actomyosin and protects epithelial tissue from cell deformations.

artículo científico publicado en 2017

Erratum: Visualization of image data from cells to organisms

scholarly article by Thomas Walter et al published June 2010 in Nature Methods

Evolutionary history of tissue bending

scientific article published on 01 October 2019

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

artículo científico publicado en 2002

Exploring Time-dependent Scientific Data Using Spatially Aware Mobiles and Large Displays

Fiji: an open-source platform for biological-image analysis

artículo científico publicado en 2012

Gene Regulation: Analog to Digital Conversion of Transcription Factor Gradients

scientific article published on 01 June 2019

Gene expression divergence recapitulates the developmental hourglass model

artículo científico publicado en 2010

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

artículo científico publicado en 2007

Global analysis of patterns of gene expression during Drosophila embryogenesis

artículo científico publicado en 2007

Globally optimal stitching of tiled 3D microscopic image acquisitions

artículo científico publicado en 2009

Going "open" with mesoscopy: a new dimension on multi-view imaging.

artículo científico publicado en 2014

Guide to light-sheet microscopy for adventurous biologists

artículo científico publicado en 2015

Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications

article

Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy

scientific article published on 11 February 2020

In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura

artículo científico publicado en 2010

Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences

artículo científico publicado en 2014

Light-sheet microscopy for everyone? Experience of building an OpenSPIM to study flatworm development

artículo científico publicado en 2016

Mapping the complexity of transcription control in higher eukaryotes

artículo científico publicado en 2010

Mapping the gene expression universe

artículo científico publicado en 2008

Meeting report: first light sheet based fluorescence microscopy workshop

scientific article published on 01 August 2010

Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

artículo científico publicado en 2009

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.

artículo científico publicado en 2018

Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism

artículo científico publicado en 2017

Open-source solutions for SPIMage processing

artículo científico publicado en 2014

OpenSPIM: an open-access light-sheet microscopy platform.

artículo científico publicado en 2013

Ordered patterning of the sensory system is susceptible to stochastic features of gene expression

artículo científico publicado en 2020

Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy.

artículo científico publicado en 2015

Production of fosmid genomic libraries optimized for liquid culture recombineering and cross-species transgenesis.

artículo científico publicado en 2011

Publisher Correction: Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects

scientific article published on 01 April 2019

Publisher Correction: Tissue clearing and its applications in neuroscience

artículo científico publicado en 2020

RNA buffers the phase separation behavior of prion-like RNA binding proteins.

artículo científico publicado en 2018

Rapid Ovary Mass-Isolation (ROMi) to Obtain Large Quantities of Drosophila Egg Chambers for Fluorescent In Situ Hybridization.

artículo científico publicado en 2016

Recombination-mediated genetic engineering of large genomic DNA transgenes.

artículo científico publicado en 2011

Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation

artículo científico publicado en 2020

Restoration of Uneven Illumination in Light Sheet Microscopy Images

article published in 2011

Sample Preparation and Mounting of Drosophila Embryos for Multiview Light Sheet Microscopy

artículo científico publicado en 2016

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution

artículo científico publicado en 2008

Small molecule screen in embryonic zebrafish using modular variations to target segmentation.

artículo científico publicado en 2017

Software for bead-based registration of selective plane illumination microscopy data

artículo científico publicado en 2010

Surface tension determines tissue shape and growth kinetics

scientific article published on 11 September 2019

Systematic determination of patterns of gene expression during Drosophila embryogenesis

artículo científico publicado en 2002

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development

artículo científico publicado en 2015

The ImageJ Ecosystem: open-source software for image visualization, processing, and analysis

artículo científico publicado en 2020

The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation

scientific article published on 15 January 2019

The earliest transcribed zygotic genes are short, newly evolved, and different across species

artículo científico publicado en 2014

The evolution of early animal embryos: conservation or divergence?

artículo científico publicado en 2012

Tissue clearing and its applications in neuroscience

scientific article published on 01 February 2020

TrakEM2 software for neural circuit reconstruction

artículo científico publicado en 2012

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach

artículo científico publicado en 2007

Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development

artículo científico publicado en 2016

Visualization of image data from cells to organisms

artículo científico publicado en 2010

Yorkie controls tube length and apical barrier integrity during airway development

scientific article published on 17 July 2019

linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type

artículo científico publicado en 2011

Lista de obras de Pavel Tomancak

A genome-wide resource for the analysis of protein localisation in Drosophila

A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis

A toolkit for high-throughput, cross-species gene engineering in Drosophila

Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus.

An adaptive threshold in mammalian neocortical evolution

An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes

An automated workflow for parallel processing of large multiview SPIM recordings

An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

An objective comparison of cell-tracking algorithms.

Analysis of Actomyosin Dynamics at Local Cellular and Tissue Scales Using Time-lapse Movies of Cultured Drosophila Egg Chambers

Assessing phototoxicity in live fluorescence imaging.

Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

BigDataViewer: visualization and processing for large image data sets

Bioimage Informatics in the context of Drosophila research

Biological imaging software tools

CATMAID: collaborative annotation toolkit for massive amounts of image data

CLIJ: GPU-accelerated image processing for everyone

Cell communication in the blink of an eye

Comment on "Cortical folding scales universally with surface area and thickness, not number of neurons".

Computational identification of Drosophila microRNA genes

Content-aware image restoration: pushing the limits of fluorescence microscopy

Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch

Current challenges in open-source bioimage informatics

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

Ectopic expression of S28A-mutated Histone H3 modulates longevity, stress resistance and cardiac function in Drosophila.

Efficient Bayesian-based multiview deconvolution

Elastic volume reconstruction from series of ultra-thin microscopy sections.

Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila

Epithelial rotation is preceded by planar symmetry breaking of actomyosin and protects epithelial tissue from cell deformations.

Erratum: Visualization of image data from cells to organisms

Evolutionary history of tissue bending

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Exploring Time-dependent Scientific Data Using Spatially Aware Mobiles and Large Displays

Fiji: an open-source platform for biological-image analysis

Gene Regulation: Analog to Digital Conversion of Transcription Factor Gradients

Gene expression divergence recapitulates the developmental hourglass model

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

Global analysis of patterns of gene expression during Drosophila embryogenesis

Globally optimal stitching of tiled 3D microscopic image acquisitions

Going "open" with mesoscopy: a new dimension on multi-view imaging.

Guide to light-sheet microscopy for adventurous biologists

Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications

Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy

In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura

Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences

Light-sheet microscopy for everyone? Experience of building an OpenSPIM to study flatworm development

Mapping the complexity of transcription control in higher eukaryotes

Mapping the gene expression universe

Meeting report: first light sheet based fluorescence microscopy workshop

Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.

Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism

Open-source solutions for SPIMage processing

OpenSPIM: an open-access light-sheet microscopy platform.

Ordered patterning of the sensory system is susceptible to stochastic features of gene expression

Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy.

Production of fosmid genomic libraries optimized for liquid culture recombineering and cross-species transgenesis.

Publisher Correction: Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects

Publisher Correction: Tissue clearing and its applications in neuroscience

RNA buffers the phase separation behavior of prion-like RNA binding proteins.

Rapid Ovary Mass-Isolation (ROMi) to Obtain Large Quantities of Drosophila Egg Chambers for Fluorescent In Situ Hybridization.

Recombination-mediated genetic engineering of large genomic DNA transgenes.

Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation

Restoration of Uneven Illumination in Light Sheet Microscopy Images

Sample Preparation and Mounting of Drosophila Embryos for Multiview Light Sheet Microscopy

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution

Small molecule screen in embryonic zebrafish using modular variations to target segmentation.

Software for bead-based registration of selective plane illumination microscopy data

Surface tension determines tissue shape and growth kinetics

Systematic determination of patterns of gene expression during Drosophila embryogenesis

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development

The ImageJ Ecosystem: open-source software for image visualization, processing, and analysis

The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation

The earliest transcribed zygotic genes are short, newly evolved, and different across species

The evolution of early animal embryos: conservation or divergence?

Tissue clearing and its applications in neuroscience