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Lista de obras de Andrea Pagnani

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

artículo científico publicado en 2008

A discrete model of water with two distinct glassy phases

article

A stochastic local search algorithm for distance-based phylogeny reconstruction

artículo científico publicado en 2010

An analytic approximation of the feasible space of metabolic networks

artículo científico publicado en 2017

Bridging the gaps in systems biology

artículo científico publicado en 2014

Classification and sparse-signature extraction from gene-expression data

article

Coloring random graphs.

artículo científico publicado en 2002

Core percolation and onset of complexity in boolean networks.

artículo científico publicado en 2006

Critical exponents of the KPZ equation via multi-surface coding numerical simulations

article by Enzo Marinari et al published 9 November 2000 in Journal of Physics A

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

artículo científico publicado en 2011

Estimating the size of the solution space of metabolic networks.

artículo científico publicado en 2008

Exploiting Co-evolution across Protein Families for Predicting Native Contacts and Protein-Protein Interaction Surfaces

Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners

artículo científico publicado en 2014

Finite size corrections to random Boolean networks

Gene-network inference by message passing

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

artículo científico publicado en 2013

Glassy Transition in a Disordered Model for the RNA Secondary Structure

artículo científico publicado en 2000

Identifying all moiety conservation laws in genome-scale metabolic networks

artículo científico publicado en 2014

Improving contact prediction along three dimensions

artículo científico publicado en 2014

Inference algorithms for gene networks: a statistical mechanics analysis

article

Inference for interacting linear waves in ordered and random media

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

artículo científico publicado en 2010

Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition

artículo científico publicado en 2012

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

artículo científico publicado en 2013

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon

artículo científico publicado en 2016

Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes.

artículo científico publicado en 2013

Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

artículo científico publicado en 2016

Metastable configurations on the Bethe lattice

Modelling Competing Endogenous RNA Networks

artículo científico publicado en 2013

Multisurface coding simulations of the restricted solid-on-solid model in four dimensions

artículo científico publicado en 2013

Near-optimal configurations in mean-field disordered systems

article

Numerical estimate of the Kardar-Parisi-Zhang universality class in (2+1) dimensions

artículo científico publicado en 2015

Perturbation biology: inferring signaling networks in cellular systems

artículo científico publicado en 2013

Polynomial iterative algorithms for coloring and analyzing random graphs.

artículo científico publicado en 2003

Predicting protein functions with message passing algorithms

artículo científico publicado en 2004

Propagation of external regulation and asynchronous dynamics in random Boolean networks

scientific article published on 01 June 2007

Protein 3D structure computed from evolutionary sequence variation

artículo científico publicado en 2011

SLAMF1 regulation of chemotaxis and autophagy determines CLL patient response

artículo científico publicado en 2015

Scalings of Domain Wall Energies in Two Dimensional Ising Spin Glasses

scientific article published in Physical Review Letters

Sharing information to reconstruct patient-specific pathways in heterogeneous diseases

scientific article published on January 2014

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

article published in 2012

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.

artículo científico publicado en 2016

Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem

artículo científico publicado en 2013

Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

artículo científico publicado en 2018

Stability of the replica symmetric solution in diluted perceptron learning

Statistical mechanics of sparse generalization and graphical model selection

article published in 2009

The computational core and fixed point organization in Boolean networks

article published in 2006

The enzymatic activities of CD38 enhance CLL growth and trafficking: implications for therapeutic targeting.

artículo científico publicado en 2014

The importance of dilution in the inference of biological networks

The intrinsic dimension of protein sequence evolution

The space of feasible solutions in metabolic networks

Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs

artículo científico publicado en 2004

Width distributions and the upper critical dimension of Kardar-Parisi-Zhang interfaces

artículo científico publicado en 2002

Zero-temperature properties of RNA secondary structures

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins

artículo científico publicado en 2017