Lista de obras - Jakob Skou Pedersen - Dominio Público Uruguay

A comparative method for finding and folding RNA secondary structures within protein-coding regions

artículo científico publicado en 2004

A dual program for translation regulation in cellular proliferation and differentiation

artículo científico publicado en 2014

A high-resolution map of human evolutionary constraint using 29 mammals

artículo científico publicado en 2011

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

artículo científico publicado en 2018

Abstract 3153: Whole genome and transcriptome analysis reveals novel genomic alterations in bladder cancer

An RNA gene expressed during cortical development evolved rapidly in humans

artículo científico publicado en 2006

An evolutionary model for protein-coding regions with conserved RNA structure

artículo científico publicado en 2004

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

artículo científico publicado en 2020

Analysis of circulating tumour DNA to monitor disease burden following colorectal cancer surgery.

artículo científico publicado en 2015

Ancient human genome sequence of an extinct Palaeo-Eskimo

artículo científico publicado en 2010

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

artículo científico publicado en 2020

Cellular disposal of miR23b by RAB27-dependent exosome release is linked to acquisition of metastatic properties

artículo científico publicado en 2014

Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer.

artículo científico publicado en 2017

Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.

artículo científico publicado en 2016

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome

scientific article published in Scientific Reports

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

artículo científico publicado en 2007

EBADIMEX: An empirical Bayes approach to detect joint differential expression and methylation and to classify samples

Editing modifies the GABA(A) receptor subunit alpha3

artículo científico publicado en 2007

Evolution of genes and genomes on the Drosophila phylogeny

artículo científico publicado en 2007

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

artículo científico publicado en 2005

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX

artículo científico publicado en 2016

Forces shaping the fastest evolving regions in the human genome

artículo científico publicado en 2006

Gene finding with a hidden Markov model of genome structure and evolution

artículo científico publicado en 2003

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

artículo científico publicado en 2014

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

artículo científico publicado en 2007

Identification and classification of conserved RNA secondary structures in the human genome

artículo científico publicado en 2006

Identification of expressed and conserved human noncoding RNAs

artículo científico publicado en 2013

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

artículo científico publicado en 2011

Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis

scientific article published on 25 September 2020

Mutational context and diverse clonal development in early and late bladder cancer.

artículo científico publicado en 2014

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

artículo científico publicado en 2011

Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue

artículo científico publicado en 2014

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

artículo científico publicado en 2017

Optimized targeted sequencing of cell-free plasma DNA from bladder cancer patients.

artículo científico publicado en 2018

PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification

artículo científico publicado en 2016

Paired Exome Analysis Reveals Clonal Evolution and Potential Therapeutic Targets in Urothelial Carcinoma

artículo científico publicado en 2016

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

artículo científico publicado en 2018

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

Pathway and network analysis of more than 2500 whole cancer genomes

artículo científico publicado en 2020

Posttranscriptional crossregulation between Drosha and DGCR8.

artículo científico publicado en 2009

ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction

artículo científico publicado en 2016

RHCG and TCAF1 promoter hypermethylation predicts biochemical recurrence in prostate cancer patients treated by radical prostatectomy

scientific article published on 30 December 2016

Regmex, Motif analysis in ranked lists of sequences

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

artículo científico publicado en 2018

SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism

artículo científico publicado en 2016

SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

artículo científico publicado en 2016

SNPest: a probabilistic graphical model for estimating genotypes

artículo científico publicado en 2014

Significance evaluation in factor graphs

artículo científico publicado en 2017

Structured RNAs in the ENCODE selected regions of the human genome

artículo científico publicado en 2007

The UCSC Genome Browser Database: 2008 update

artículo científico publicado en 2008

The UCSC Genome Browser Database: update 2006

artículo científico publicado en 2006

The UCSC genome browser database: update 2007.

artículo científico publicado en 2006

The lncRNA MIR31HG regulates p16(INK4A) expression to modulate senescence

artículo científico publicado en 2015

The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer

scientific article published on 25 January 2022

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

artículo científico publicado en 2011

Unique genomic features and deeply-conserved functions of long non-coding RNAs in the Cancer LncRNA Census (CLC)

Widespread DNA hypomethylation and differential gene expression in Turner syndrome

artículo científico publicado en 2016

epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

artículo científico publicado en 2017

miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

artículo científico publicado en 2016

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation

artículo científico publicado en 2019

Lista de obras de Jakob Skou Pedersen

A comparative method for finding and folding RNA secondary structures within protein-coding regions

A dual program for translation regulation in cellular proliferation and differentiation

A high-resolution map of human evolutionary constraint using 29 mammals

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

Abstract 3153: Whole genome and transcriptome analysis reveals novel genomic alterations in bladder cancer

An RNA gene expressed during cortical development evolved rapidly in humans

An evolutionary model for protein-coding regions with conserved RNA structure

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Analysis of circulating tumour DNA to monitor disease burden following colorectal cancer surgery.

Ancient human genome sequence of an extinct Palaeo-Eskimo

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Cellular disposal of miR23b by RAB27-dependent exosome release is linked to acquisition of metastatic properties

Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer.

Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

EBADIMEX: An empirical Bayes approach to detect joint differential expression and methylation and to classify samples

Editing modifies the GABA(A) receptor subunit alpha3

Evolution of genes and genomes on the Drosophila phylogeny

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX

Forces shaping the fastest evolving regions in the human genome

Gene finding with a hidden Markov model of genome structure and evolution

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Identification and classification of conserved RNA secondary structures in the human genome

Identification of expressed and conserved human noncoding RNAs

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis

Mutational context and diverse clonal development in early and late bladder cancer.

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

Optimized targeted sequencing of cell-free plasma DNA from bladder cancer patients.

PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification

Paired Exome Analysis Reveals Clonal Evolution and Potential Therapeutic Targets in Urothelial Carcinoma

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

Pathway and network analysis of more than 2500 whole cancer genomes

Posttranscriptional crossregulation between Drosha and DGCR8.

ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction

RHCG and TCAF1 promoter hypermethylation predicts biochemical recurrence in prostate cancer patients treated by radical prostatectomy

Regmex, Motif analysis in ranked lists of sequences

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism

SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

SNPest: a probabilistic graphical model for estimating genotypes

Significance evaluation in factor graphs

Structured RNAs in the ENCODE selected regions of the human genome

The UCSC Genome Browser Database: 2008 update

The UCSC Genome Browser Database: update 2006

The UCSC genome browser database: update 2007.

The lncRNA MIR31HG regulates p16(INK4A) expression to modulate senescence

The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

Unique genomic features and deeply-conserved functions of long non-coding RNAs in the Cancer LncRNA Census (CLC)

Widespread DNA hypomethylation and differential gene expression in Turner syndrome

epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation