Lista de obras - Eric Rivals - Dominio Público Uruguay

A fast and specific alignment method for minisatellite maps

artículo científico publicado en 2006

AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees

artículo científico publicado en 2019

Accurate self-correction of errors in long reads using de Bruijn graphs

artículo científico publicado en 2016

Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance

artículo científico publicado en 2022

An alternative approach to multiple genome comparison

artículo científico publicado en 2011

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

artículo científico publicado en 2014

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

artículo científico

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome

artículo científico publicado en 2013

Comparison of minisatellites

artículo científico publicado en 2003

Compression and genetic sequence analysis

artículo científico publicado en 1996

Computational approaches to identify leucine zippers

artículo científico publicado en 1998

Computing Phylo-k-Mers

artículo científico publicado en 2023

DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach

artículo científico publicado en 2010

De novo assembly of viral quasispecies using overlap graphs

artículo científico publicado en 2017

Detecting microsatellites within genomes: significant variation among algorithms

artículo científico publicado en 2007

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite

artículo científico publicado en 2014

Evolutionary process of a tetranucleotide microsatellite locus in Acipenseriformes

article

FTO-mediated cytoplasmic m<sup>6</sup>A<sub>m</sub> demethylation adjusts stem-like properties in colorectal cancer cell

artículo científico publicado en 2021

Formation of the Arabidopsis pentatricopeptide repeat family

artículo científico publicado en 2006

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia.

artículo científico publicado en 2017

GeneNest: automated generation and visualization of gene indices

article

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

artículo científico publicado en 2011

LoRDEC: accurate and efficient long read error correction.

artículo científico publicado en 2014

Location of repetitive regions in sequences by optimizing a compression method.

artículo científico publicado en 1999

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

scientific article published on 11 July 2019

Novel definition and algorithm for chaining fragments with proportional overlaps

artículo científico publicado en 2011

Population genomics of picophytoplankton unveils novel chromosome hypervariability.

artículo científico publicado en 2017

Querying large read collections in main memory: a versatile data structure.

artículo científico publicado en 2011

Read mapping on de Bruijn graphs.

artículo científico publicado en 2016

Relationship between superstring and compression measures: New insights on the greedy conjecture

artículo científico publicado en 2018

Ribo-seq enlightens codon usage bias

artículo científico publicado en 2017

STAR: an algorithm to Search for Tandem Approximate Repeats

artículo científico

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo).

artículo científico publicado en 2010

Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies.

artículo científico publicado en 2007

The ancient Yakuts: a population genetic enigma

artículo científico publicado en 2015

The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.

artículo científico publicado en 2017

Transcriptome annotation using tandem SAGE tags

artículo científico publicado en 2007

Transformation distances: a family of dissimilarity measures based on movements of segments.

artículo científico publicado en 1999

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

artículo científico publicado en 2009

YOC, A new strategy for pairwise alignment of collinear genomes

artículo científico publicado en 2015

dipwmsearch: a Python package for searching di-PWM motifs

artículo científico publicado en 2023

Lista de obras de Eric Rivals

A fast and specific alignment method for minisatellite maps

AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees

Accurate self-correction of errors in long reads using de Bruijn graphs

Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance

An alternative approach to multiple genome comparison

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome

Comparison of minisatellites

Compression and genetic sequence analysis

Computational approaches to identify leucine zippers

Computing Phylo-k-Mers

DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach

De novo assembly of viral quasispecies using overlap graphs

Detecting microsatellites within genomes: significant variation among algorithms

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite

Evolutionary process of a tetranucleotide microsatellite locus in Acipenseriformes

FTO-mediated cytoplasmic m<sup>6</sup>A<sub>m</sub> demethylation adjusts stem-like properties in colorectal cancer cell

Formation of the Arabidopsis pentatricopeptide repeat family

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia.

GeneNest: automated generation and visualization of gene indices

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

LoRDEC: accurate and efficient long read error correction.

Location of repetitive regions in sequences by optimizing a compression method.

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

Novel definition and algorithm for chaining fragments with proportional overlaps

Population genomics of picophytoplankton unveils novel chromosome hypervariability.

Querying large read collections in main memory: a versatile data structure.

Read mapping on de Bruijn graphs.

Relationship between superstring and compression measures: New insights on the greedy conjecture

Ribo-seq enlightens codon usage bias

STAR: an algorithm to Search for Tandem Approximate Repeats

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo).

Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies.

The ancient Yakuts: a population genetic enigma

The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.

Transcriptome annotation using tandem SAGE tags

Transformation distances: a family of dissimilarity measures based on movements of segments.

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

YOC, A new strategy for pairwise alignment of collinear genomes

dipwmsearch: a Python package for searching di-PWM motifs

mpscan: Fast Localisation of Multiple Reads in Genomes