Lista de obras - Sophia Ananiadou - Dominio Público Uruguay

A Deep Learning Approach to Refine the Identification of High-Quality Clinical Research Articles From the Biomedical Literature: Protocol for Algorithm Development and Validation

artículo científico publicado en 2021

A Text Mining Framework for Accelerating the Semantic Curation of Literature

article

A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience

artículo científico publicado en 2019

A comparative geolocation and text mining analysis of emotions and topics during the COVID-19 Pandemic in the UK (Preprint)

artículo científico publicado en 2022

A cross-lingual similarity measure for detecting biomedical term translations

artículo científico publicado en 2015

A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data

artículo científico publicado en 2013

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text

artículo científico publicado en 2013

A semi-supervised approach using label propagation to support citation screening

artículo científico publicado en 2017

AGRA: analysis of gene ranking algorithms.

artículo científico publicado en 2011

ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials

artículo científico publicado en 2012

Accelerating the annotation of sparse named entities by dynamic sentence selection

artículo científico publicado en 2008

Adaptable, high recall, event extraction system with minimal configuration

artículo científico publicado en 2015

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods

artículo científico publicado en 2020

An ensemble of neural models for nested adverse drug events and medication extraction with subwords

scientific article published on 01 January 2020

Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts

artículo científico publicado en 2016

Anatomical entity mention recognition at literature scale

artículo científico publicado en 2013

Anatomical entity recognition with a hierarchical framework augmented by external resources

artículo científico publicado en 2014

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease

artículo científico publicado en 2019

Annotation and detection of drug effects in text for pharmacovigilance

Applications of text mining within systematic reviews

artículo científico publicado en 2011

Argo: an integrative, interactive, text mining-based workbench supporting curation

artículo científico publicado en 2012

Argo: enabling the development of bespoke workflows and services for disease annotation

artículo científico publicado en 2016

Automatic extraction of angiogenesis bioprocess from text

artículo científico publicado en 2011

Automatic extraction of microorganisms and their habitats from free text using text mining workflows

artículo científico publicado en 2011

Back to the Future: Towards Explainable Temporal Reasoning with Large Language Models

artículo científico publicado en 2024

Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary

artículo científico publicado en 2015

BioCause: Annotating and analysing causality in the biomedical domain

artículo científico publicado en 2013

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

artículo científico publicado en 2016

Biosimilar Versus Originator Insulins: Systematic review and meta-analysis

artículo científico publicado en 2018

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

artículo científico publicado en 2012

Boosting drug named entity recognition using an aggregate classifier

artículo científico publicado en 2015

Building a high-quality sense inventory for improved abbreviation disambiguation

artículo científico publicado en 2010

Building an abbreviation dictionary using a term recognition approach

artículo científico publicado en 2006

COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature ⬇️

scientific article published on 22 January 2019

Clinical text classification under the Open and Closed Topic Assumptions

artículo científico publicado en 2009

Constructing a biodiversity terminological inventory

artículo científico publicado en 2017

Construction of an annotated corpus to support biomedical information extraction

artículo científico publicado en 2009

Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods

artículo científico publicado en 2017

Dealing with Data Sparsity in Drug Named Entity Recognition

article published in 2013

Deploying and sharing U-Compare workflows as web services

artículo científico publicado en 2013

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

artículo científico publicado en 2011

Developing a Robust Part-of-Speech Tagger for Biomedical Text

article

Disambiguating the species of biomedical named entities using natural language parsers

artículo científico publicado en 2010

Discovering and visualizing indirect associations between biomedical concepts. ⬇️

artículo científico publicado en 2011

Dólares or Dollars? Unraveling the Bilingual Prowess of Financial LLMs Between Spanish and English

artículo científico publicado en 2024

EmoLLMs: A Series of Emotional Large Language Models and Annotation Tools for Comprehensive Affective Analysis

artículo científico publicado en 2024

Enriching news events with meta-knowledge information

Erratum to: Using text mining for study identification in systematic reviews: a systematic review of current approaches

artículo científico publicado en 2015

Event extraction across multiple levels of biological organization

artículo científico publicado en 2012

Event extraction for systems biology by text mining the literature

artículo científico publicado en 2010

Event-based text mining for biology and functional genomics

artículo científico publicado en 2015

Extracting semantically enriched events from biomedical literature

artículo científico publicado en 2012

FACTA: a text search engine for finding associated biomedical concepts

artículo científico publicado en 2008

Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

artículo científico publicado en 2008

Generalising semantic category disambiguation with large lexical resources for fun and profit

artículo científico publicado en 2014

How to make the most of NE dictionaries in statistical NER. ⬇️

artículo científico publicado en 2008

Hypothesis, analysis and synthesis, it's all Greek to me

artículo científico publicado en 2019

Identification of research hypotheses and new knowledge from scientific literature.

artículo científico publicado en 2018

Improving clinical named entity recognition in Chinese using the graphical and phonetic feature

scientific article published on 23 December 2019

Improving reference prioritisation with PICO recognition

scientific article published on 05 December 2019

Large-scale event extraction from literature with multi-level gene normalization

artículo científico publicado en 2013

Learning string similarity measures for gene/protein name dictionary look-up using logistic regression

artículo científico publicado en 2007

LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models.

artículo científico publicado en 2017

MaSTerClass: a case-based reasoning system for the classification of biomedical terms

artículo científico

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error

article

Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource

artículo científico publicado en 2016

Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries

artículo científico publicado en 2019

MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models

artículo científico publicado en 2024

Mining metabolites: extracting the yeast metabolome from the literature

artículo científico publicado en 2010

Mining semantically related terms from biomedical literature

Named entity recognition for bacterial Type IV secretion systems

artículo científico publicado en 2011

Negated bio-events: analysis and identification

artículo científico publicado en 2013

Normalizing biomedical terms by minimizing ambiguity and variability

artículo científico publicado en 2008

Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics

artículo científico publicado en 2015

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

artículo científico publicado en 2015

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

artículo científico publicado en 2012

Overview of the interactive task in BioCreative V

artículo científico publicado en 2016

PathText: a text mining integrator for biological pathway visualizations

artículo científico publicado en 2010

Prioritising references for systematic reviews with RobotAnalyst: A user study

artículo científico publicado en 2018

Proceedings of the Second International Symposium for Semantic Mining in Biomedicine

Processing biological literature with customizable Web services supporting interoperable formats

artículo científico publicado en 2014

Proximity-based frameworks for generating embeddings from multi-output data

artículo científico publicado en 2012

Quantifying risk factors in medical reports with a context-aware linear model ⬇️

artículo científico publicado en 2019

Recognising discourse causality triggers in the biomedical domain

artículo científico

Reducing systematic review workload through certainty-based screening.

artículo científico publicado en 2014

Risk of bias reporting in the recent animal focal cerebral ischaemia literature

artículo científico publicado en 2017

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.

artículo científico publicado en 2016

Self-Tuned Descriptive Document Clustering Using a Predictive Network

Semi-supervised learning of causal relations in biomedical scientific discourse

artículo científico publicado en 2014

Supporting Systematic Reviews Using Text Mining

scholarly article by Sofia Ananiadou et al published 20 April 2009 in Social Science Computer Review

Supporting systematic reviews using LDA-based document representations

artículo científico publicado en 2015

Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows

artículo científico publicado en 2015

Supporting the education evidence portal via text mining

artículo científico publicado en 2010

Terminology-driven literature mining and knowledge acquisition in biomedicine.

artículo científico

Terminology-driven mining of biomedical literature

artículo científico

Text Mining Supporting Search for Knowledge Discovery in Diabetes

Text Mining the History of Medicine

artículo científico publicado en 2016

Text mining and its potential applications in systems biology

artículo científico publicado en 2006

Text mining and ontologies in biomedicine: making sense of raw text

artículo científico publicado en 2005

Text mining meets workflow: linking U-Compare with Taverna

artículo científico publicado en 2010

Text mining resources for the life sciences

artículo científico publicado en 2016

Text-mining-assisted biocuration workflows in Argo

artículo científico publicado en 2014

Thalia: Semantic search engine for biomedical abstracts

artículo científico publicado en 2019

The BioLexicon: a large-scale terminological resource for biomedical text mining

article published in 2011

The pace of modern culture

scientific article published on 20 January 2020

The strategic impact of META-NET on the regional, national and international level

The use of text-mining and machine learning algorithms in systematic reviews: reducing workload in preclinical biomedical sciences and reducing human screening error

scholarly article published 31 January 2018

The value of an in-domain lexicon in genomics QA.

artículo científico publicado en 2010

Themes in biomedical natural language processing: BioNLP08.

artículo científico publicado en 2008

Thesaurus or Logical Ontology, Which One Do We Need for Text Mining?

article

Topic detection using paragraph vectors to support active learning in systematic reviews

artículo científico publicado en 2016

U-Compare bio-event meta-service: compatible BioNLP event extraction services

artículo científico publicado en 2011

U-Compare: share and compare text mining tools with UIMA

artículo científico publicado en 2009

UKPMC: a full text article resource for the life sciences

artículo científico publicado en 2011

Using automatically learnt verb selectional preferences for classification of biomedical terms

artículo científico

Using text mining for study identification in systematic reviews: a systematic review of current approaches

artículo científico publicado en 2015

Using text mining techniques to extract phenotypic information from the PhenoCHF corpus

artículo científico publicado en 2015

Using uncertainty to link and rank evidence from biomedical literature for model curation

artículo científico publicado en 2017

Using workflows to explore and optimise named entity recognition for chemistry

artículo científico publicado en 2011

Wide coverage biomedical event extraction using multiple partially overlapping corpora

artículo científico publicado en 2013

Zero-shot Temporal Relation Extraction with ChatGPT ⬇️

artículo científico publicado en 2023

biochem4j: Integrated and extensible biochemical knowledge through graph databases.

artículo científico

Lista de obras de Sophia Ananiadou

A Deep Learning Approach to Refine the Identification of High-Quality Clinical Research Articles From the Biomedical Literature: Protocol for Algorithm Development and Validation

A Text Mining Framework for Accelerating the Semantic Curation of Literature

A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience

A comparative geolocation and text mining analysis of emotions and topics during the COVID-19 Pandemic in the UK (Preprint)

A cross-lingual similarity measure for detecting biomedical term translations

A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text

A semi-supervised approach using label propagation to support citation screening

AGRA: analysis of gene ranking algorithms.

ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials

Accelerating the annotation of sparse named entities by dynamic sentence selection

Adaptable, high recall, event extraction system with minimal configuration

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods

An ensemble of neural models for nested adverse drug events and medication extraction with subwords

Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts

Anatomical entity mention recognition at literature scale

Anatomical entity recognition with a hierarchical framework augmented by external resources

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease

Annotation and detection of drug effects in text for pharmacovigilance

Applications of text mining within systematic reviews

Argo: an integrative, interactive, text mining-based workbench supporting curation

Argo: enabling the development of bespoke workflows and services for disease annotation

Automatic extraction of angiogenesis bioprocess from text

Automatic extraction of microorganisms and their habitats from free text using text mining workflows

Back to the Future: Towards Explainable Temporal Reasoning with Large Language Models

Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary

BioCause: Annotating and analysing causality in the biomedical domain

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

Biosimilar Versus Originator Insulins: Systematic review and meta-analysis

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

Boosting drug named entity recognition using an aggregate classifier

Building a high-quality sense inventory for improved abbreviation disambiguation

Building an abbreviation dictionary using a term recognition approach

COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature ⬇️

Clinical text classification under the Open and Closed Topic Assumptions

Constructing a biodiversity terminological inventory

Construction of an annotated corpus to support biomedical information extraction

Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods

Dealing with Data Sparsity in Drug Named Entity Recognition

Deploying and sharing U-Compare workflows as web services

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

Developing a Robust Part-of-Speech Tagger for Biomedical Text

Disambiguating the species of biomedical named entities using natural language parsers

Discovering and visualizing indirect associations between biomedical concepts. ⬇️

Dólares or Dollars? Unraveling the Bilingual Prowess of Financial LLMs Between Spanish and English

EmoLLMs: A Series of Emotional Large Language Models and Annotation Tools for Comprehensive Affective Analysis

Enriching news events with meta-knowledge information

Erratum to: Using text mining for study identification in systematic reviews: a systematic review of current approaches

Event extraction across multiple levels of biological organization

Event extraction for systems biology by text mining the literature

Event-based text mining for biology and functional genomics

Extracting semantically enriched events from biomedical literature

FACTA: a text search engine for finding associated biomedical concepts

Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

Generalising semantic category disambiguation with large lexical resources for fun and profit

How to make the most of NE dictionaries in statistical NER. ⬇️

Hypothesis, analysis and synthesis, it's all Greek to me

Identification of research hypotheses and new knowledge from scientific literature.

Improving clinical named entity recognition in Chinese using the graphical and phonetic feature

Improving reference prioritisation with PICO recognition

Large-scale event extraction from literature with multi-level gene normalization

Learning string similarity measures for gene/protein name dictionary look-up using logistic regression

LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models.

MaSTerClass: a case-based reasoning system for the classification of biomedical terms

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error

Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource

Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries

MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models

Mining metabolites: extracting the yeast metabolome from the literature

Mining semantically related terms from biomedical literature

Named entity recognition for bacterial Type IV secretion systems

Negated bio-events: analysis and identification

Normalizing biomedical terms by minimizing ambiguity and variability

Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

Overview of the interactive task in BioCreative V

PathText: a text mining integrator for biological pathway visualizations

Prioritising references for systematic reviews with RobotAnalyst: A user study