Lista de obras - Sofia K Forslund - Dominio Público Uruguay

A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links

A novel exploratory method for visual recombination detection

artículo científico publicado en 2003

A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation

artículo científico publicado en 2014

Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice

artículo científico publicado en 2024

Abstract P2072: Integrative Network Analysis Of Microbiome-Immune Axis In Metabolic Syndrome Patients During A Fasting Intervention

scholarly article

Advances and Applications in the Quest for Orthologs

scientific article published on 01 October 2019

An altered plasma lipidome–phenome network characterizes heart failure with preserved ejection fraction

artículo científico publicado en 2024

Antibiotics-induced monodominance of a novel gut bacterial order

artículo científico publicado en 2019

Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

artículo científico publicado en 2020

B-cell lymphoma/leukaemia 10 and angiotensin II-induced kidney injury

scientific article published on 01 April 2020

Benchmarking homology detection procedures with low complexity filters

artículo científico publicado en 2009

Benchmarking the next generation of homology inference tools

artículo científico publicado en 2016

Biggest challenges in bioinformatics

artículo científico publicado en 2013

Blood Pressure Changes Correlate with Short-Chain Fatty Acids Production Shifts Under a Synbiotic Intervention

scientific article published on 31 March 2020

Constructing Phylogenetic Supernetworks from Quartets

scholarly article published in Lecture Notes in Computer Science

Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

artículo científico publicado en 2017

Country-specific antibiotic use practices impact the human gut resistome

artículo científico publicado en 2013

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

artículo científico publicado en 2015

Domain architecture conservation in orthologs

artículo científico publicado en 2011

Domain tree-based analysis of protein architecture evolution

artículo científico publicado en 2007

Domainoid: domain-oriented orthology inference

scientific article published on 28 October 2019

Dynamic Changes in Microbiome Composition Following Mare's Milk Intake for Prevention of Collateral Antibiotic Effect

artículo científico publicado en 2021

Elevated aldosterone and blood pressure in a mouse model of familial hyperaldosteronism with ClC-2 mutation

artículo científico publicado en 2019

Enhanced Ca2+ signaling, mild primary aldosteronism, and hypertension in a familial hyperaldosteronism mouse model (Cacna1hM1560V/+)

artículo científico publicado en 2021

Evolution of Protein Domain Architectures

scientific article published on 01 January 2019

Evolution of protein domain architectures

artículo científico publicado en 2012

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

artículo científico

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

article

Fasting alters the gut microbiome reducing blood pressure and body weight in metabolic syndrome patients

artículo científico publicado en 2021

Gearing up to handle the mosaic nature of life in the quest for orthologs

artículo científico publicado en 2017

Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysis

artículo científico publicado en 2016

Hitchhiker's guide to microbiome studies

artículo científico publicado en 2020

Human gut microbes impact host serum metabolome and insulin sensitivity

artículo científico publicado en 2016

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

artículo científico publicado en 2020

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

artículo científico publicado en 2010

Individuality and temporal stability of the human gut microbiome

artículo científico publicado en 2013

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

artículo científico publicado en 2016

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

artículo científico publicado en 2022

MOCAT2: a metagenomic assembly, annotation and profiling framework

artículo científico publicado en 2016

Metagenomic analysis of gut microbial communities from a Central Asian population

article

Metagenomic insights into the human gut resistome and the forces that shape it.

artículo científico

Microbiome and metabolome features of the cardiometabolic disease spectrum

artículo científico publicado en 2022

OrthoDisease: tracking disease gene orthologs across 100 species

artículo científico publicado en 2011

Orthology confers intron position conservation

artículo científico publicado en 2010

Phosphodiesterase 3A and Arterial Hypertension

artículo científico publicado en 2020

Precarious Symbiosis Between Host and Microbiome in Cardiovascular Health

artículo científico publicado en 2019

Predicting protein function from domain content

artículo científico

Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism

scientific article published on 10 March 2020

Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent Cohorts

QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets

artículo científico publicado en 2006

Quantifying Technical Confounders in Microbiome Studies

scientific article published on 06 May 2020

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

artículo científico publicado en 2015

RTK: efficient rarefaction analysis of large datasets

artículo científico publicado en 2017

Recovery of gut microbiota of healthy adults following antibiotic exposure

scientific article published on 22 October 2018

S100A8 and S100A9 are Important for Postnatal Development of Gut Microbiota and Immune System in Mice and Infants

scientific article published on 14 August 2020

STRING v10: protein-protein interaction networks, integrated over the tree of life

artículo científico publicado en 2015

Salt Transiently Inhibits Mitochondrial Energetics in Mononuclear Phagocytes

artículo científico publicado en 2021

Salt-responsive gut commensal modulates TH17 axis and disease

artículo científico publicado en 2017

Shared and Distinct Gut Microbiota in Spondyloarthritis, Acute Anterior Uveitis, and Crohn's Disease

artículo científico publicado en 2023

Short-Chain Fatty Acid Propionate Protects From Hypertensive Cardiovascular Damage.

artículo científico publicado en 2019

Similarity of the dog and human gut microbiomes in gene content and response to diet.

artículo científico publicado en 2018

Spondyloarthritis, acute anterior uveitis, and Crohn’s disease have both shared and distinct gut microbiota

artículo científico publicado en 2022

Standardized benchmarking in the quest for orthologs

artículo científico publicado en 2016

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

scientific article published on 06 May 2020

Structure and function of the global topsoil microbiome

artículo científico publicado en 2018

Studies of the bugs within: telling sickness from cure

artículo científico publicado en 2018

Subspecies in the global human gut microbiome.

artículo científico publicado en 2017

Ten Years of Collaborative Progress in the Quest for Orthologs

artículo científico publicado en 2021

The Pfam protein families database

artículo científico publicado en 2012

The Pfam protein families database

artículo científico publicado en 2010

The Pfam protein families database ⬇️

artículo científico publicado en 2008

Towards the biogeography of prokaryotic genes

artículo científico publicado en 2021

Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.

artículo científico publicado en 2018

Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines

artículo científico publicado en 2018

VisRD--visual recombination detection

artículo científico publicado en 2004

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

artículo científico publicado en 2015

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

artículo científico publicado en 2019

eggNOG v4.0: nested orthology inference across 3686 organisms

artículo científico publicado en 2013

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

artículo científico publicado en 2020

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

artículo científico publicado en 2016

Lista de obras de Sofia K Forslund

A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links

A novel exploratory method for visual recombination detection

A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation

Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice

Abstract P2072: Integrative Network Analysis Of Microbiome-Immune Axis In Metabolic Syndrome Patients During A Fasting Intervention

Advances and Applications in the Quest for Orthologs

An altered plasma lipidome–phenome network characterizes heart failure with preserved ejection fraction

Antibiotics-induced monodominance of a novel gut bacterial order

Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

B-cell lymphoma/leukaemia 10 and angiotensin II-induced kidney injury

Benchmarking homology detection procedures with low complexity filters

Benchmarking the next generation of homology inference tools

Biggest challenges in bioinformatics

Blood Pressure Changes Correlate with Short-Chain Fatty Acids Production Shifts Under a Synbiotic Intervention

Constructing Phylogenetic Supernetworks from Quartets

Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Country-specific antibiotic use practices impact the human gut resistome

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Domain architecture conservation in orthologs

Domain tree-based analysis of protein architecture evolution

Domainoid: domain-oriented orthology inference

Dynamic Changes in Microbiome Composition Following Mare's Milk Intake for Prevention of Collateral Antibiotic Effect

Elevated aldosterone and blood pressure in a mouse model of familial hyperaldosteronism with ClC-2 mutation

Enhanced Ca2+ signaling, mild primary aldosteronism, and hypertension in a familial hyperaldosteronism mouse model (Cacna1hM1560V/+)

Evolution of Protein Domain Architectures

Evolution of protein domain architectures

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Fasting alters the gut microbiome reducing blood pressure and body weight in metabolic syndrome patients

Gearing up to handle the mosaic nature of life in the quest for orthologs

Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysis

Hitchhiker's guide to microbiome studies

Human gut microbes impact host serum metabolome and insulin sensitivity

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

Individuality and temporal stability of the human gut microbiome

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

MOCAT2: a metagenomic assembly, annotation and profiling framework

Metagenomic analysis of gut microbial communities from a Central Asian population

Metagenomic insights into the human gut resistome and the forces that shape it.

Microbiome and metabolome features of the cardiometabolic disease spectrum

OrthoDisease: tracking disease gene orthologs across 100 species

Orthology confers intron position conservation

Phosphodiesterase 3A and Arterial Hypertension

Precarious Symbiosis Between Host and Microbiome in Cardiovascular Health

Predicting protein function from domain content

Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism

Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent Cohorts

QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets

Quantifying Technical Confounders in Microbiome Studies

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

RTK: efficient rarefaction analysis of large datasets

Recovery of gut microbiota of healthy adults following antibiotic exposure

S100A8 and S100A9 are Important for Postnatal Development of Gut Microbiota and Immune System in Mice and Infants

STRING v10: protein-protein interaction networks, integrated over the tree of life

Salt Transiently Inhibits Mitochondrial Energetics in Mononuclear Phagocytes

Salt-responsive gut commensal modulates TH17 axis and disease

Shared and Distinct Gut Microbiota in Spondyloarthritis, Acute Anterior Uveitis, and Crohn's Disease

Short-Chain Fatty Acid Propionate Protects From Hypertensive Cardiovascular Damage.

Similarity of the dog and human gut microbiomes in gene content and response to diet.

Spondyloarthritis, acute anterior uveitis, and Crohn’s disease have both shared and distinct gut microbiota

Standardized benchmarking in the quest for orthologs

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

Structure and function of the global topsoil microbiome

Studies of the bugs within: telling sickness from cure

Subspecies in the global human gut microbiome.

Ten Years of Collaborative Progress in the Quest for Orthologs

The Pfam protein families database

The Pfam protein families database

The Pfam protein families database ⬇️

Towards the biogeography of prokaryotic genes

Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.

Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines

VisRD--visual recombination detection

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

eggNOG v4.0: nested orthology inference across 3686 organisms