Lista de obras - Luisa Castagnoli - Dominio Público Uruguay

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

artículo científico publicado en 2002

A novel approach to protein-protein interaction: complex formation between the p53 tumor suppressor and the HIV Tat proteins.

artículo científico publicado en 1995

A strategy to optimize translation initiation in recombinant mRNA: application to the Rop gene.

artículo científico

A subset of RAB proteins modulates PP2A phosphatase activity

artículo científico publicado en 2016

A two-hybrid system based on chimeric operator recognition for studying protein homo/heterodimerization in Escherichia coli

artículo científico publicado en 2001

Alterations in the phosphoproteomic profile of cells expressing a non-functional form of the SHP2 phosphatase.

artículo científico publicado en 2015

Alternative bacteriophage display systems.

artículo científico publicado en 2001

Analysis of dominant copy number mutants of the plasmid pMB1

artículo científico publicado en 1985

Approaches to Analyze Protein Interactions.

artículo científico publicado en 2002

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

artículo científico publicado en 2009

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

artículo científico publicado en 2011

Binding to DPF-motif by the POB1 EH domain is responsible for POB1-Eps15 interaction

artículo científico publicado en 2007

Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases

artículo científico publicado en 2017

CUBAN, a Case Study of Selective Binding: Structural Details of the Discrimination between Ubiquitin and NEDD8 ⬇️

artículo científico

Can we infer peptide recognition specificity mediated by SH3 domains?

artículo científico publicado en 2002

Characterization by mass cytometry of different methods for the preparation of muscle mononuclear cells.

artículo científico publicado en 2016

Characterization of a promoter up mutation in the -35 region of the promoter of the primer for ColE1 replication.

artículo científico publicado en 1987

Cloning of several cDNA segments coding for human liver proteins

artículo científico publicado en 1983

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1

artículo científico publicado en 2019

Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways.

artículo científico publicado en 2014

Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens

artículo científico publicado en 2010

Construction, exploitation and evolution of a new peptide library displayed at high density by fusion to the major coat protein of filamentous phage

artículo científico publicado en 1997

Control of ColE1 plasmid replication by antisense RNA.

artículo científico publicado en 1991

Control of initiation of pMB1 replication: purified Rop protein and RNA I affect primer formation in vitro

artículo científico publicado en 1984

Control of pMB1 replication: inhibition of primer formation by Rop requires RNA1.

artículo científico publicado en 1984

Counteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome

artículo científico publicado en 2012

DISNOR: a disease network open resource.

artículo científico publicado en 2017

DOMINO: a database of domain-peptide interactions

artículo científico publicado en 2006

Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State.

artículo científico publicado en 2016

Diverse driving forces underlie the invariant occurrence of the T42A, E139D, I282V and T468M SHP2 amino acid substitutions causing Noonan and LEOPARD syndromes

artículo científico publicado en 2008

Domain repertoires as a tool to derive protein recognition rules.

artículo científico publicado en 2000

Enriching the viral-host interactomes with interactions mediated by SH3 domains

artículo científico publicado en 2009

Erratum: Nepravishta, R., et al. CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1. Biomolecules 2019, 9, 284

artículo científico publicado en 2019

Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

artículo científico publicado en 2019

Genetic and structural analysis of the ColE1 Rop (Rom) protein

artículo científico publicado en 1989

Group I Paks support muscle regeneration and counteract cancer-associated muscle atrophy.

artículo científico publicado en 2018

HiPPO and PANDA: two bioinformatics tools to support analysis of high-dimensional mass cytometry data

High-Dimensional Single-Cell Quantitative Profiling of Skeletal Muscle Cell Population Dynamics during Regeneration

scientific article published on 18 July 2020

How does Rop work?

artículo científico publicado en 1984

HuPho: the human phosphatase portal

artículo científico publicado en 2012

Hybrid Rop-pIII proteins for the display of constrained peptides on filamentous phage capsids

artículo científico publicado en 1993

Identification of new substrates of the protein-tyrosine phosphatase PTP1B by Bayesian integration of proteome evidence

artículo científico publicado en 2010

Increasing the immunogenicity of protein antigens through the genetic insertion of VQGEESNDK sequence of human IL-1 beta into their sequence.

artículo científico publicado en 1993

Intersectin, a novel adaptor protein with two Eps15 homology and five Src homology 3 domains.

artículo científico publicado en 1998

Linking an easily detectable phenotype to the folding of a common structural motif. Selection of rare turn mutations that prevent the folding of Rop.

artículo científico

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

artículo científico publicado en 2008

MINT, the molecular interaction database: 2009 update

artículo científico publicado en 2010

MINT, the molecular interaction database: 2012 update

artículo científico publicado en 2011

MINT: the Molecular INTeraction database

artículo científico publicado en 2007

Mapping protein-protein interactions with phage-displayed combinatorial peptide libraries

artículo científico publicado en 2003

Mapping the human phosphatome on growth pathways

artículo científico publicado en 2012

Metformin Delays Satellite Cell Activation and Maintains Quiescence.

artículo científico publicado en 2019

Metformin Induces Apoptosis and Downregulates Pyruvate Kinase M2 in Breast Cancer Cells Only When Grown in Nutrient-Poor Conditions

artículo científico publicado en 2015

Metformin protects skeletal muscle from cardiotoxin induced degeneration

artículo científico publicado en 2014

Methods to reveal domain networks

artículo científico publicado en 2005

Microfluidic-enhanced 3D bioprinting of aligned myoblast-laden hydrogels leads to functionally organized myofibers in vitro and in vivo

artículo científico publicado en 2017

Multiple modification and protein interaction signals drive the Ring finger protein 11 (RNF11) E3 ligase to the endosomal compartment

artículo científico publicado en 2010

Osteogenic differentiation of skeletal muscle progenitor cells is activated by the DNA damage response

artículo científico publicado en 2019

Phage displayed peptide libraries

artículo científico publicado en 1999

Physical and Functional Interaction between p53 Mutants and Different Isoforms of p73

artículo científico publicado en 2000

Physical interaction with Yes-associated protein enhances p73 transcriptional activity

artículo científico publicado en 2001

Processing of eukaryotic tRNA precursors: secondary structure of the precursor specific sequences affects the rate but not the accuracy of processing reactions.

artículo científico publicado en 1982

Promoter of a eukaryotic tRNAPro gene is composed of three noncontiguous regions.

artículo científico publicado en 1982

Protein interaction networks by proteome peptide scanning

artículo científico publicado en 2004

RNF11 at the Crossroads of Protein Ubiquitination

artículo científico publicado en 2020

RNF11 is a GGA protein cargo and acts as a molecular adaptor for GGA3 ubiquitination mediated by Itch.

artículo científico publicado en 2014

Reactive oxygen species and epidermal growth factor are antagonistic cues controlling SHP-2 dimerization

artículo científico publicado en 2012

Recognition specificity of individual EH domains of mammals and yeast

artículo científico publicado en 1998

Regulation of myoblast differentiation by metabolic perturbations induced by metformin.

artículo científico publicado en 2017

Report and Abstracts of the 14th Meeting of IIM, the Interuniversity Institute of Myology, - Assisi (Italy), October 12-15, 2017

article

Role of 14-3-3 proteins in the regulation of neutral trehalase in the yeast Saccharomyces cerevisiae

artículo científico publicado en 2008

SIGNOR: a database of causal relationships between biological entities.

artículo científico publicado en 2015

Selection from a peptide library of the antigenic determinants of a protein

artículo científico publicado en 1993

Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector.

artículo científico publicado en 1991

Selection of ligands by panning of domain libraries displayed on phage lambda reveals new potential partners of synaptojanin 1

artículo científico publicado en 2001

Selectivity and promiscuity in the interaction network mediated by protein recognition modules

artículo científico publicado en 2004

The 4G10, pY20 and p-TYR-100 antibody specificity: profiling by peptide microarrays

artículo científico publicado en 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

artículo científico publicado en 2011

The SH2 domain interaction landscape

artículo científico publicado en 2013

The SH3 domains of endophilin and amphiphysin bind to the proline-rich region of synaptojanin 1 at distinct sites that display an unconventional binding specificity

artículo científico publicado en 1999

The adapter protein CD2AP binds to p53 protein in the cytoplasm and can discriminate its polymorphic variants P72R.

artículo científico publicado en 2014

The cell-autonomous mechanisms underlying the activity of metformin as an anticancer drug

artículo científico publicado en 2016

The central proline rich region of POB1/REPS2 plays a regulatory role in epidermal growth factor receptor endocytosis by binding to 14-3-3 and SH3 domain-containing proteins

artículo científico publicado en 2008

The genes encoding the transcription factor yTAFII60, the G4p1 protein and a putative glucose transporter are contained in a 12.3 kb DNA fragment on the left arm of Saccharomyces cerevisiae chromosome VII.

artículo científico publicado en 1997

The human phosphatase interactome: An intricate family portrait

artículo científico publicado en 2012

The immunosuppressant drug azathioprine restrains adipogenesis of muscle Fibro/Adipogenic Progenitors from dystrophic mice by affecting AKT signaling

scientific article published on 13 March 2019

The nucleotide sequence of Saccharomyces cerevisiae chromosome VII.

artículo científico publicado en 1997

The plasmid as a tool for plasmid genetics. I. Fine structure of the beta-lactamase gene

scientific article published on 01 December 1982

The plasmid as a tool for plasmid genetics. II. Isolation of point mutations that affect replication of a ColE1-related plasmid

artículo científico publicado en 1982

The protein interaction network mediated by human SH3 domains

artículo científico publicado en 2011

Transcription by RNA polymerase III.

artículo científico publicado en 1983

Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases

artículo científico publicado en 2009

Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis

artículo científico publicado en 2002

VirusMINT: a viral protein interaction database

artículo científico publicado en 2008

mentha: a resource for browsing integrated protein-interaction networks

artículo científico publicado en 2013

Lista de obras de Luisa Castagnoli

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

A novel approach to protein-protein interaction: complex formation between the p53 tumor suppressor and the HIV Tat proteins.

A strategy to optimize translation initiation in recombinant mRNA: application to the Rop gene.

A subset of RAB proteins modulates PP2A phosphatase activity

A two-hybrid system based on chimeric operator recognition for studying protein homo/heterodimerization in Escherichia coli

Alterations in the phosphoproteomic profile of cells expressing a non-functional form of the SHP2 phosphatase.

Alternative bacteriophage display systems.

Analysis of dominant copy number mutants of the plasmid pMB1

Approaches to Analyze Protein Interactions.

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Binding to DPF-motif by the POB1 EH domain is responsible for POB1-Eps15 interaction

Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases

CUBAN, a Case Study of Selective Binding: Structural Details of the Discrimination between Ubiquitin and NEDD8 ⬇️

Can we infer peptide recognition specificity mediated by SH3 domains?

Characterization by mass cytometry of different methods for the preparation of muscle mononuclear cells.

Characterization of a promoter up mutation in the -35 region of the promoter of the primer for ColE1 replication.

Cloning of several cDNA segments coding for human liver proteins

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1

Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways.

Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens

Construction, exploitation and evolution of a new peptide library displayed at high density by fusion to the major coat protein of filamentous phage

Control of ColE1 plasmid replication by antisense RNA.

Control of initiation of pMB1 replication: purified Rop protein and RNA I affect primer formation in vitro

Control of pMB1 replication: inhibition of primer formation by Rop requires RNA1.

Counteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome

DISNOR: a disease network open resource.

DOMINO: a database of domain-peptide interactions

Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State.

Diverse driving forces underlie the invariant occurrence of the T42A, E139D, I282V and T468M SHP2 amino acid substitutions causing Noonan and LEOPARD syndromes

Domain repertoires as a tool to derive protein recognition rules.

Enriching the viral-host interactomes with interactions mediated by SH3 domains

Erratum: Nepravishta, R., et al. CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1. Biomolecules 2019, 9, 284

Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

Genetic and structural analysis of the ColE1 Rop (Rom) protein

Group I Paks support muscle regeneration and counteract cancer-associated muscle atrophy.

HiPPO and PANDA: two bioinformatics tools to support analysis of high-dimensional mass cytometry data

High-Dimensional Single-Cell Quantitative Profiling of Skeletal Muscle Cell Population Dynamics during Regeneration

How does Rop work?

HuPho: the human phosphatase portal

Hybrid Rop-pIII proteins for the display of constrained peptides on filamentous phage capsids

Identification of new substrates of the protein-tyrosine phosphatase PTP1B by Bayesian integration of proteome evidence

Increasing the immunogenicity of protein antigens through the genetic insertion of VQGEESNDK sequence of human IL-1 beta into their sequence.

Intersectin, a novel adaptor protein with two Eps15 homology and five Src homology 3 domains.

Linking an easily detectable phenotype to the folding of a common structural motif. Selection of rare turn mutations that prevent the folding of Rop.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

MINT, the molecular interaction database: 2009 update

MINT, the molecular interaction database: 2012 update

MINT: the Molecular INTeraction database

Mapping protein-protein interactions with phage-displayed combinatorial peptide libraries

Mapping the human phosphatome on growth pathways

Metformin Delays Satellite Cell Activation and Maintains Quiescence.

Metformin Induces Apoptosis and Downregulates Pyruvate Kinase M2 in Breast Cancer Cells Only When Grown in Nutrient-Poor Conditions

Metformin protects skeletal muscle from cardiotoxin induced degeneration

Methods to reveal domain networks

Microfluidic-enhanced 3D bioprinting of aligned myoblast-laden hydrogels leads to functionally organized myofibers in vitro and in vivo

Multiple modification and protein interaction signals drive the Ring finger protein 11 (RNF11) E3 ligase to the endosomal compartment

Osteogenic differentiation of skeletal muscle progenitor cells is activated by the DNA damage response

Phage displayed peptide libraries

Physical and Functional Interaction between p53 Mutants and Different Isoforms of p73

Physical interaction with Yes-associated protein enhances p73 transcriptional activity

Processing of eukaryotic tRNA precursors: secondary structure of the precursor specific sequences affects the rate but not the accuracy of processing reactions.

Promoter of a eukaryotic tRNAPro gene is composed of three noncontiguous regions.

Protein interaction networks by proteome peptide scanning

RNF11 at the Crossroads of Protein Ubiquitination

RNF11 is a GGA protein cargo and acts as a molecular adaptor for GGA3 ubiquitination mediated by Itch.

Reactive oxygen species and epidermal growth factor are antagonistic cues controlling SHP-2 dimerization

Recognition specificity of individual EH domains of mammals and yeast

Regulation of myoblast differentiation by metabolic perturbations induced by metformin.

Report and Abstracts of the 14th Meeting of IIM, the Interuniversity Institute of Myology, - Assisi (Italy), October 12-15, 2017

Role of 14-3-3 proteins in the regulation of neutral trehalase in the yeast Saccharomyces cerevisiae

SIGNOR: a database of causal relationships between biological entities.

Selection from a peptide library of the antigenic determinants of a protein

Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector.

Selection of ligands by panning of domain libraries displayed on phage lambda reveals new potential partners of synaptojanin 1

Selectivity and promiscuity in the interaction network mediated by protein recognition modules

The 4G10, pY20 and p-TYR-100 antibody specificity: profiling by peptide microarrays

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

The SH2 domain interaction landscape