Lista de obras - Jukka Corander - Dominio Público Uruguay

Adaptive importance sampling in signal processing

scholarly article by Mónica F. Bugallo et al published December 2015 in Digital Signal Processing

An adaptive population importance sampler

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

artículo científico publicado en 2021

Bayesian Unsupervised Learning of DNA Regulatory Binding Regions

Climate induces seasonality in pneumococcal transmission

artículo científico publicado en 2015

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

artículo científico publicado en 2016

Corrigendum: Climate induces seasonality in pneumococcal transmission

artículo científico publicado en 2016

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

artículo científico publicado en 2016

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

artículo científico publicado en 2014

Dense genomic sampling identifies highways of pneumococcal recombination

artículo científico publicado en 2014

Detection of recombination events in bacterial genomes from large population samples

artículo científico publicado en 2011

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

artículo científico publicado en 2018

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

artículo científico publicado en 2015

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

artículo científico publicado en 2016

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

Fast and flexible bacterial genomic epidemiology with PopPUNK

scholarly article published 6 July 2018

Fast and flexible bacterial genomic epidemiology with PopPUNK

artículo científico publicado en 2019

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

artículo científico publicado en 2020

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics

artículo científico publicado en 2017

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

artículo científico publicado en 2021

Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.

artículo científico publicado en 2017

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom

article

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

scientific article published on 12 June 2019

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?

artículo científico publicado en 2016

Global and regional dissemination and evolution of Burkholderia pseudomallei

artículo científico publicado en 2017

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

artículo científico publicado en 2013

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

artículo científico publicado en 2014

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

artículo científico publicado en 2017

Likelihood-free inference with deep Gaussian processes

artículo científico publicado en 2022

MCMC-Driven Adaptive Multiple Importance Sampling

article published in 2015

Novel R pipeline for analyzing Biolog Phenotypic MicroArray data

artículo científico publicado en 2015

Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov.

artículo científico publicado en 2014

PANINI: Pangenome Neighbour Identification for Bacterial Populations

scientific article published in 2019

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation

artículo científico publicado en 2019

Parallel independent evolution of pathogenicity within the genus Yersinia

artículo científico publicado en 2014

Patterns of genome evolution that have accompanied host adaptation in Salmonella

artículo científico publicado en 2014

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

scientific article published on 27 December 2012

Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

article

Probabilistic Prediction of Contacts in Protein-Ligand Complexes ⬇️

artículo científico publicado el 14 de noviembre de 2012

Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages

artículo científico publicado en 2021

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS

artículo científico publicado en 2018

Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria

artículo científico publicado en 2009

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

artículo científico publicado en 2016

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.

artículo científico publicado en 2017

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease

artículo científico publicado en 2018

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease

article published in 2019

The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease

The de novo genome assembly and annotation of a female domestic dromedary of North African origin

artículo científico publicado en 2016

Two-phase importance sampling for inference about transmission trees

artículo científico publicado en 2014

Understanding pneumococcal serotype 1 biology through population genomic analysis

artículo científico publicado en 2016

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

artículo científico publicado en 2016

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe

artículo científico publicado en 2016

Approximate Bayesian computation

artículo científico publicado en 2013

Lista de obras de Jukka Corander

Adaptive importance sampling in signal processing

An adaptive population importance sampler

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

Bayesian Unsupervised Learning of DNA Regulatory Binding Regions

Climate induces seasonality in pneumococcal transmission

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

Corrigendum: Climate induces seasonality in pneumococcal transmission

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

Dense genomic sampling identifies highways of pneumococcal recombination

Detection of recombination events in bacterial genomes from large population samples

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Fast and flexible bacterial genomic epidemiology with PopPUNK

Fast and flexible bacterial genomic epidemiology with PopPUNK

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?

Global and regional dissemination and evolution of Burkholderia pseudomallei

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Likelihood-free inference with deep Gaussian processes

MCMC-Driven Adaptive Multiple Importance Sampling

Novel R pipeline for analyzing Biolog Phenotypic MicroArray data

Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov.

PANINI: Pangenome Neighbour Identification for Bacterial Populations

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation

Parallel independent evolution of pathogenicity within the genus Yersinia

Patterns of genome evolution that have accompanied host adaptation in Salmonella

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

Probabilistic Prediction of Contacts in Protein-Ligand Complexes ⬇️

Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS

Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease

The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease

The de novo genome assembly and annotation of a female domestic dromedary of North African origin

Two-phase importance sampling for inference about transmission trees

Understanding pneumococcal serotype 1 biology through population genomic analysis

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe

Approximate Bayesian computation