Lista de obras - Anália Lourenço - Dominio Público Uruguay

@Note: a workbench for biomedical text mining

artículo científico

A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures

A framework for the integrated analysis of metabolic and regulatory networks

article published in 2008

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

artículo científico publicado en 2011

A network perspective on antimicrobial peptide combination therapies: the potential of colistin, polymyxin B and nisin.

artículo científico publicado en 2017

A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry

artículo científico publicado en 2013

A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis

artículo científico publicado en 2016

Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans

scientific article published on 08 March 2018

Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.

artículo científico publicado en 2015

An harmonised vocabulary for communicating and interchanging biofilms experimental results.

artículo científico

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

artículo científico publicado en 2019

Application of classification-tree models to characterize the mycobiota of grapes on the basis of origin.

artículo científico publicado en 2006

Approach for Unveiling the Glycoside Hydrolase Activities in Through a Systematic and Integrative Large-Scale Analysis

scientific article published on 04 April 2019

BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines

artículo científico

BioDR: Semantic indexing networks for biomedical document retrieval

BiofOmics: a Web platform for the systematic and standardized collection of high-throughput biofilm data

artículo científico publicado en 2012

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

scientific article published in PLoS ONE

Challenges in integrating Escherichia coli molecular biology data

artículo científico publicado en 2010

Collaborative relation annotation and quality analysis in Markyt environment.

artículo científico publicado en 2017

Computational approach to the systematic prediction of glycolytic abilities: looking into human microbiota

artículo científico publicado en 2020

Computational prediction of the bioactivity potential of proteomes based on expert knowledge

artículo científico publicado en 2019

Computational resources and strategies to construct single-molecule metabolic models of microbial cells

artículo científico publicado en 2015

Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow.

scientific article published on 26 December 2016

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

artículo científico publicado en 2012

Critical review on biofilm methods.

artículo científico publicado en 2016

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

artículo científico publicado en 2019

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

Data Quality in Biofilm High-Throughput Routine Analysis: Intralaboratory Protocol Adaptation and Experiment Reproducibility

artículo científico publicado en 2015

Designing an Ontology Tool for the Unification of Biofilms Data

Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.

artículo científico publicado en 2015

Evaluating Web Site Structure Based on Navigation Profiles and Site Topology

article published in 2013

Exploring Anti-Quorum Sensing and Anti-Virulence Based Strategies to fight Candida albicans infections: an in silico approach.

artículo científico publicado en 2018

Extraction of pharmacokinetic evidence of drug-drug interactions from the literature ⬇️

artículo científico publicado en 2015

From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides.

artículo científico publicado en 2016

Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms

artículo científico publicado en 2016

High performance computing for three-dimensional agent-based molecular models

artículo científico publicado en 2016

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

artículo científico publicado en 2016

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

artículo científico publicado en 2017

In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

scientific article published on 30 January 2019

Information Retrieval and Text Mining Technologies for Chemistry.

artículo científico publicado en 2017

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways

scholarly article by Anália Lourenço et al published 2011 in Advances in Intelligent and Soft Computing

Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

scientific article published on 10 January 2017

Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects

artículo científico publicado en 2014

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces

artículo científico publicado en 2014

MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria

MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies.

artículo científico

Networking the Way towards Antimicrobial Combination Therapies

New trends in peptide-based anti-biofilm strategies: a review of recent achievements and bioinformatic approaches.

artículo científico

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

scientific article published on 24 June 2019

P4P: a peptidome-based strain-level genome comparison web tool

artículo científico publicado en 2017

Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties

artículo científico

Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy

artículo científico publicado en 2017

Probiotics, gut microbiota, and their influence on host health and disease.

artículo científico publicado en 2016

Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining.

artículo científico

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

artículo científico publicado en 2017

Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective

artículo científico publicado en 2020

Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms

artículo científico publicado en 2017

Semantic annotation of biological concepts interplaying microbial cellular responses

artículo científico publicado en 2011

Single Molecule Simulation of Diffusion and Enzyme Kinetics.

artículo científico publicado en 2016

Stringent response of Escherichia coli: revisiting the bibliome using literature mining.

artículo científico publicado en 2011

Tackling probiotic and gut microbiota functionality through proteomics.

artículo científico publicado en 2016

Text mining for the biocuration workflow

artículo científico publicado en 2012

The Complexity of Promoter Regions Based on a Vector Topological Entropy

The Evolving Role of Information Technology in Haemovigilance Systems.

artículo científico publicado en 2018

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

artículo científico publicado en 2016

Using Twitter to Understand the Human Bowel Disease Community: Exploratory Analysis of Key Topics

scientific article published on 15 August 2019

Web scraping technologies in an API world ⬇️

artículo científico publicado el 30 de abril de 2013

Lista de obras de Anália Lourenço

@Note: a workbench for biomedical text mining

A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures

A framework for the integrated analysis of metabolic and regulatory networks

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

A network perspective on antimicrobial peptide combination therapies: the potential of colistin, polymyxin B and nisin.

A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry

A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis

Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans

Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.

An harmonised vocabulary for communicating and interchanging biofilms experimental results.

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

Application of classification-tree models to characterize the mycobiota of grapes on the basis of origin.

Approach for Unveiling the Glycoside Hydrolase Activities in Through a Systematic and Integrative Large-Scale Analysis

BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines

BioDR: Semantic indexing networks for biomedical document retrieval

BiofOmics: a Web platform for the systematic and standardized collection of high-throughput biofilm data

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

Challenges in integrating Escherichia coli molecular biology data

Collaborative relation annotation and quality analysis in Markyt environment.

Computational approach to the systematic prediction of glycolytic abilities: looking into human microbiota

Computational prediction of the bioactivity potential of proteomes based on expert knowledge

Computational resources and strategies to construct single-molecule metabolic models of microbial cells

Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow.

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Critical review on biofilm methods.

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

Data Quality in Biofilm High-Throughput Routine Analysis: Intralaboratory Protocol Adaptation and Experiment Reproducibility

Designing an Ontology Tool for the Unification of Biofilms Data

Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.

Evaluating Web Site Structure Based on Navigation Profiles and Site Topology

Exploring Anti-Quorum Sensing and Anti-Virulence Based Strategies to fight Candida albicans infections: an in silico approach.

Extraction of pharmacokinetic evidence of drug-drug interactions from the literature ⬇️

From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides.

Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms

High performance computing for three-dimensional agent-based molecular models

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

Information Retrieval and Text Mining Technologies for Chemistry.

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways

Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces

MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria

MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies.

Networking the Way towards Antimicrobial Combination Therapies

New trends in peptide-based anti-biofilm strategies: a review of recent achievements and bioinformatic approaches.

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

P4P: a peptidome-based strain-level genome comparison web tool

Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties

Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy

Probiotics, gut microbiota, and their influence on host health and disease.

Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining.

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective

Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms

Semantic annotation of biological concepts interplaying microbial cellular responses

Single Molecule Simulation of Diffusion and Enzyme Kinetics.

Stringent response of Escherichia coli: revisiting the bibliome using literature mining.

Tackling probiotic and gut microbiota functionality through proteomics.

Text mining for the biocuration workflow

The Complexity of Promoter Regions Based on a Vector Topological Entropy

The Evolving Role of Information Technology in Haemovigilance Systems.

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

Using Twitter to Understand the Human Bowel Disease Community: Exploratory Analysis of Key Topics

Web scraping technologies in an API world ⬇️