Lista de obras - Jim Leebens-Mack - Dominio Público Uruguay

A COMBINED 18S rDNA AND rbcL PHYLOGENETIC ANALYSIS OF CHLOROMONAS AND CHLAMYDOMONAS (CHLOROPHYCEAE, VOLVOCALES) EMPHASIZING SNOW AND OTHER COLD-TEMPERATURE HABITATS1

article

A Century of Sex Determination in Flowering Plants

artículo científico publicado en 2016

A genome triplication associated with early diversification of the core eudicots

artículo científico publicado en 2012

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

artículo científico publicado en 2011

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach

artículo científico publicado en 2006

Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach

artículo científico publicado en 2013

Altered Gene Regulatory Networks Are Associated With the Transition From C to Crassulacean Acid Metabolism in (Oncidiinae: Orchidaceae)

article

An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers

artículo científico publicado en 2006

Ancestral polyploidy in seed plants and angiosperms

artículo científico publicado en 2011

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

scholarly article by Thomas J. Givnish et al published 27 December 2010 in Annals of the Missouri Botanical Garden

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

artículo científico publicado en 2013

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies.

artículo científico publicado en 2013

ChloroplastDB: the Chloroplast Genome Database

artículo científico publicado en 2006

Comparative genomic analyses in Asparagus

artículo científico publicado en 2005

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies ⬇️

artículo científico publicado el 15 de octubre de 2010

Comparison of next generation sequencing technologies for transcriptome characterization

artículo científico publicado en 2009

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

artículo científico publicado en 2006

Complex scaffold remodeling in plant triterpene biosynthesis

artículo científico publicado en 2023

Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids

artículo científico publicado en 2017

Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower

artículo científico publicado en 2010

Contrasting patterns of support among plastid genes and genomes for major clades of the monocotyledons

article

Data access for the 1,000 Plants (1KP) project

artículo científico publicado en 2014

Distributed phenomics with the unPAK project reveals the effects of mutations

scientific article published on 09 July 2019

EST clustering error evaluation and correction

artículo científico publicado en 2004

Elucidation of the pathway for biosynthesis of saponin adjuvants from the soapbark tree

artículo científico publicado en 2023

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

artículo científico publicado en 2012

Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism

artículo científico publicado en 2015

Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae).

artículo científico publicado en 2016

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land

article

Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications.

artículo científico publicado en 2009

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

artículo científico publicado en 2005

Floral gene resources from basal angiosperms for comparative genomics research

artículo científico publicado en 2005

Floral homeotic C function genes repress specific B function genes in the carpel whorl of the basal eudicot California poppy (Eschscholzia californica)

artículo científico publicado en 2010

Gas exchange and leaf anatomy of a C3-CAM hybrid, Yucca gloriosa (Asparagaceae)

artículo científico publicado en 2015

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants

artículo científico publicado en 2014

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

artículo científico publicado en 2018

Geographic isolation trumps coevolution as a driver of yucca and yucca moth diversification

artículo científico publicado en 2011

HOST SPECIFICITY AND THE GENETIC STRUCTURE OF TWO YUCCA MOTH SPECIES IN A YUCCA HYBRID ZONE

scientific article published on 01 October 1998

Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications

artículo científico publicado en 2003

Homoploid hybrid origin of Yucca gloriosa: intersectional hybrid speciation in Yucca (Agavoideae, Asparagaceae)

artículo científico publicado en 2012

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, <i>Yucca gloriosa</i> (Asparagaceae)

scientific article published on 01 January 2020

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

artículo científico publicado en 2010

Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome

artículo científico publicado en 2021

Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

artículo científico publicado en 2017

Insights into the Musa genome: syntenic relationships to rice and between Musa species

artículo científico publicado en 2008

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants

artículo científico publicado en 2007

Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa

scientific article published on 13 March 2020

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

artículo científico publicado en 2010

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes

artículo científico publicado en 2014

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

artículo científico publicado en 2008

Orchid phylogenomics and multiple drivers of their extraordinary diversification

artículo científico publicado en 2015

Parallel loss of plastid introns and their maturase in the genus Cuscuta

artículo científico publicado en 2009

Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification

artículo científico publicado en 2008

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

artículo científico publicado en 2007

Patterns of genetic structure among populations of an oligophagous pollinating yucca moth (Tegeticula yuccasella).

artículo científico publicado en 2004

Patterns of speciation in the Yucca moths: parallel species radiations within the Tegeticula yuccasella species complex

artículo científico publicado en 2006

PhylOnt: A domain-specific ontology for phylogeny analysis

scholarly article published October 2012

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences.

artículo científico publicado en 2013

Phylogenomic analyses of species relationships in the genus<i>Sabal</i>(Arecaceae) using targeted sequence capture

artículo científico publicado en 2015

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

artículo científico publicado en 2012

Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae)

scientific article published on 02 April 2018

Phylotranscriptomic analysis of the origin and early diversification of land plants

artículo científico publicado en 2014

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots

scientific article published on 12 July 2018

Plant Comparative and Functional Genomics

artículo científico publicado en 2015

Plant reproductive genomics at the Plant and Animal Genome Conference

artículo científico publicado en 2005

PlantTribes: a gene and gene family resource for comparative genomics in plants

artículo científico publicado en 2007

Pollination biology in hybridizing Baptisia (Fabaceae) populations

artículo científico publicado en 1998

Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages

artículo científico publicado en 2002

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

artículo científico publicado en 2008

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

artículo científico publicado en 2012

Representing sex chromosomes in genome assemblies

scientific article published on 04 May 2022

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

artículo científico publicado en 2014

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.

artículo científico publicado en 2016

Reversal of Mutualism as a Mechanism for Adaptive Radiation in Yucca Moths

artículo científico publicado en 2000

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

artículo científico publicado en 2019

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis).

artículo científico publicado en 2015

Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca

artículo científico publicado en 2019

Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut ( spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays

artículo científico publicado en 2013

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).

artículo científico publicado en 2013

Single nucleotide polymorphism-based parentage analysis and population structure in garden asparagus, a worldwide genetic stock classification

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

artículo científico publicado en 2006

Target‐enrichment sequencing reveals for the first time a well‐resolved phylogeny of the core Bromelioideae (family Bromeliaceae) ⬇️

artículo científico publicado en 2022

The Amborella genome: an evolutionary reference for plant biology

artículo científico publicado en 2008

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

artículo científico publicado en 2006

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

artículo científico publicado en 2017

The asparagus genome sheds light on the origin and evolution of a young Y chromosome

artículo científico publicado en 2017

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

artículo científico publicado en 2012

The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid.

artículo científico publicado en 2008

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

artículo científico publicado en 2017

The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history

artículo científico publicado en 2005

The evolutionary ecology of "mutual services" in the 21st century

artículo científico publicado en 2016

The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression

artículo científico publicado en 2007

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

artículo científico publicado en 2011

The impact of multiple protein sequence alignment on phylogenetic estimation

artículo científico publicado en 2011

The minimum information about a genome sequence (MIGS) specification

artículo científico publicado en 2008

The phylogeny of yuccas

artículo científico publicado en 2006

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).

artículo científico publicado en 2016

To B or Not to B a flower: the role of DEFICIENS and GLOBOSA orthologs in the evolution of the angiosperms.

artículo científico publicado en 2005

Towards improved reconstruction of ancestral gene order in angiosperm phylogeny.

artículo científico publicado en 2009

Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae)

artículo científico publicado en 2009

Using partial genomic fosmid libraries for sequencing complete organellar genomes.

artículo científico publicado en 2006

Utility of Amborella trichopoda and Nuphar advena Expressed Sequence Tags for Comparative Sequence Analysis

artículo científico publicado en 2008

Widespread genome duplications throughout the history of flowering plants

artículo científico publicado en 2006

Yucca aloifolia (Asparagaceae) opts out of an obligate pollination mutualism.

artículo científico publicado en 2014

Lista de obras de Jim Leebens-Mack

A COMBINED 18S rDNA AND rbcL PHYLOGENETIC ANALYSIS OF CHLOROMONAS AND CHLAMYDOMONAS (CHLOROPHYCEAE, VOLVOCALES) EMPHASIZING SNOW AND OTHER COLD-TEMPERATURE HABITATS1

A Century of Sex Determination in Flowering Plants

A genome triplication associated with early diversification of the core eudicots

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach

Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach

Altered Gene Regulatory Networks Are Associated With the Transition From C to Crassulacean Acid Metabolism in (Oncidiinae: Orchidaceae)

An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers

Ancestral polyploidy in seed plants and angiosperms

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies.

ChloroplastDB: the Chloroplast Genome Database

Comparative genomic analyses in Asparagus

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies ⬇️

Comparison of next generation sequencing technologies for transcriptome characterization

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

Complex scaffold remodeling in plant triterpene biosynthesis

Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids

Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower

Contrasting patterns of support among plastid genes and genomes for major clades of the monocotyledons

Data access for the 1,000 Plants (1KP) project

Distributed phenomics with the unPAK project reveals the effects of mutations

EST clustering error evaluation and correction

Elucidation of the pathway for biosynthesis of saponin adjuvants from the soapbark tree

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism

Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae).

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land

Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications.

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

Floral gene resources from basal angiosperms for comparative genomics research

Floral homeotic C function genes repress specific B function genes in the carpel whorl of the basal eudicot California poppy (Eschscholzia californica)

Gas exchange and leaf anatomy of a C3-CAM hybrid, Yucca gloriosa (Asparagaceae)

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

Geographic isolation trumps coevolution as a driver of yucca and yucca moth diversification

HOST SPECIFICITY AND THE GENETIC STRUCTURE OF TWO YUCCA MOTH SPECIES IN A YUCCA HYBRID ZONE

Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications

Homoploid hybrid origin of Yucca gloriosa: intersectional hybrid speciation in Yucca (Agavoideae, Asparagaceae)

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, <i>Yucca gloriosa</i> (Asparagaceae)

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome

Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

Insights into the Musa genome: syntenic relationships to rice and between Musa species

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants

Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

Orchid phylogenomics and multiple drivers of their extraordinary diversification

Parallel loss of plastid introns and their maturase in the genus Cuscuta

Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

Patterns of genetic structure among populations of an oligophagous pollinating yucca moth (Tegeticula yuccasella).

Patterns of speciation in the Yucca moths: parallel species radiations within the Tegeticula yuccasella species complex

PhylOnt: A domain-specific ontology for phylogeny analysis

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences.

Phylogenomic analyses of species relationships in the genus<i>Sabal</i>(Arecaceae) using targeted sequence capture

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae)

Phylotranscriptomic analysis of the origin and early diversification of land plants

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots

Plant Comparative and Functional Genomics

Plant reproductive genomics at the Plant and Animal Genome Conference

PlantTribes: a gene and gene family resource for comparative genomics in plants

Pollination biology in hybridizing Baptisia (Fabaceae) populations

Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

Representing sex chromosomes in genome assemblies

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.

Reversal of Mutualism as a Mechanism for Adaptive Radiation in Yucca Moths

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis).

Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca

Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut ( spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).