Lista de obras - Harm van Bakel - Dominio Público Uruguay

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak

scientific article published on 22 November 2019

A compendium of multi-omics data illuminating host responses to lethal human virus infections

artículo científico publicado en 2024

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription

artículo científico publicado en 2013

A gene-specific requirement of RNA polymerase II CTD phosphorylation for sexual differentiation in S. pombe

artículo científico publicado en 2010

A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners

artículo científico publicado en 2020

A humanized MDCK cell line for the efficient isolation and propagation of human influenza viruses

scientific article published on 29 April 2019

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

artículo científico publicado en 2008

A novel germline mutation of PTEN associated with brain tumours of multiple lineages

artículo científico publicado en 2002

A physical and genetic map of identifies extensive rearrangement at the THC/CBD acid synthase locus

artículo científico publicado en 2018

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

artículo científico publicado en 2009

A unified model for yeast transcript definition

artículo científico publicado en 2013

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

artículo científico publicado en 2010

Avian Influenza Virus H5 Strain with North American and Eurasian Lineage Genes in an Antarctic Penguin.

artículo científico publicado en 2016

BCL11B expression in intramembranous osteogenesis during murine craniofacial suture development

artículo científico publicado en 2014

Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Staphylococcus aureus Clones

artículo científico publicado en 2019

Cdk11-cyclinL controls the assembly of the RNA polymerase II mediator complex

artículo científico publicado en 2012

Characterization of the human ESC transcriptome by hybrid sequencing

artículo científico publicado en 2013

Circulation of low pathogenic avian influenza (LPAI) viruses in wild birds and poultry in the Netherlands, 2006-2016

scientific article published on 23 September 2019

Community-Acquired Cavitary Pseudomonas Pneumonia Linked to Use of a Home Humidifier.

artículo científico publicado en 2017

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome

artículo científico publicado en 2008

Corrigendum to "Community-Acquired Cavitary Pseudomonas Pneumonia Linked to Use of a Home Humidifier".

artículo científico publicado en 2018

Deciphering the introduction and transmission of SARS-CoV-2 in the Colombian Amazon Basin

scientific article published on 15 April 2021

Defining the risk of SARS-CoV-2 variants on immune protection

artículo científico publicado en 2022

Determination and inference of eukaryotic transcription factor sequence specificity

artículo científico publicado en 2014

Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

scientific article published on 25 November 2019

Establishing legitimacy and function in the new transcriptome

artículo científico publicado en 2009

Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records.

artículo científico publicado en 2017

Evidence of Intercontinental Spread and Uncommon Variants of Low-Pathogenicity Avian Influenza Viruses in Ducks Overwintering in Guatemala

artículo científico publicado en 2017

FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research

scientific article published on 21 September 2020

Family matters: gene regulation by metal-dependent transcription factors

article

Fission yeast Cdk7 controls gene expression through both its CAK and C-terminal domain kinase activities

artículo científico publicado en 2015

Gastrointestinal involvement attenuates COVID-19 severity and mortality

scientific article published on 09 September 2020

Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism

artículo científico publicado en 2005

Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes

artículo científico publicado en 2007

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient

artículo científico publicado en 2017

Global analysis of SUMO chain function reveals multiple roles in chromatin regulation

artículo científico publicado en 2013

Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study.

artículo científico publicado en 2007

High capsid-genome correlation facilitates creation of AAV libraries for directed evolution

artículo científico publicado en 2015

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

artículo científico

In control: systematic assessment of microarray performance

artículo científico publicado en 2004

Influenza A variants with reduced susceptibility to baloxavir isolated from Japanese patients are fit and transmit through respiratory droplets

scientific article published on 25 November 2019

Influenza virus infection causes global RNAPII termination defects

Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice

artículo científico publicado en 2014

Introductions and early spread of SARS-CoV-2 in the New York City area

artículo científico publicado en 2020

Introductions and early spread of SARS-CoV-2 in the New York City area

artículo científico publicado en 2020

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

artículo científico publicado en 2014

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

artículo científico publicado en 2010

Mandibular dysmorphology due to abnormal embryonic osteogenesis in FGFR2-related craniosynostosis mice.

artículo científico publicado en 2019

Mapping SARS-CoV-2 antigenic relationships and serological responses

artículo científico publicado en 2023

Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets

artículo científico publicado en 2005

Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave

artículo científico publicado en 2021

Monitoring global messenger RNA changes in externally controlled microarray experiments.

artículo científico publicado en 2003

Most "dark matter" transcripts are associated with known genes

artículo científico publicado en 2010

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

artículo científico publicado en 2017

Neutrophil Recruitment and Barrier Impairment in Celiac Disease: A Genomic Study

article published in 2007

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

artículo científico publicado en 2016

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

artículo científico publicado en 2020

Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway

artículo científico publicado en 2004

Prothymosin α variants isolated from CD8+ T cells and cervicovaginal fluid suppress HIV-1 replication through type I interferon induction

artículo científico publicado en 2014

Real Time Investigation of a large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

artículo científico publicado en 2020

Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

artículo científico publicado en 2020

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

artículo científico

Repeated cross-sectional sero-monitoring of SARS-CoV-2 in New York City

artículo científico publicado en 2020

Response to “The Reality of Pervasive Transcription”

artículo científico publicado en 2011

Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein.

artículo científico publicado en 2011

SARS-CoV-2-specific IgA and limited inflammatory cytokines are present in the stool of select patients with acute COVID-19

scientific article published on 05 September 2020

Senataxin suppresses the antiviral transcriptional response and controls viral biogenesis

artículo científico publicado en 2015

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays ⬇️

artículo científico publicado en 2011

Shedding of Viable SARS-CoV-2 after Immunosuppressive Therapy for Cancer

artículo científico publicado en 2020

TEAM: a tool for the integration of expression, and linkage and association maps

artículo científico publicado en 2004

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

artículo científico publicado en 2016

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

article

The FaceBase Consortium: a comprehensive resource for craniofacial researchers

artículo científico publicado en 2016

The PsychENCODE project

artículo científico publicado en 2015

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

artículo científico publicado en 2017

The SARS-CoV-2 B.1.1.529 Omicron virus causes attenuated infection and disease in mice and hamsters

The draft genome and transcriptome of Cannabis sativa

artículo científico publicado en 2011

The genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia

artículo científico publicado en 2018

Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation

artículo científico publicado en 2012

Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation.

artículo científico publicado en 2016

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder

artículo científico publicado en 2018

Transmission of methicillin-resistant Staphylococcus aureus via deceased donor liver transplantation confirmed by whole genome sequencing

artículo científico publicado en 2014

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression

artículo científico publicado en 2009

Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.

artículo científico publicado en 2015

Lista de obras de Harm van Bakel

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak

A compendium of multi-omics data illuminating host responses to lethal human virus infections

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription

A gene-specific requirement of RNA polymerase II CTD phosphorylation for sexual differentiation in S. pombe

A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners

A humanized MDCK cell line for the efficient isolation and propagation of human influenza viruses

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

A novel germline mutation of PTEN associated with brain tumours of multiple lineages

A physical and genetic map of identifies extensive rearrangement at the THC/CBD acid synthase locus

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

A unified model for yeast transcript definition

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

Avian Influenza Virus H5 Strain with North American and Eurasian Lineage Genes in an Antarctic Penguin.

BCL11B expression in intramembranous osteogenesis during murine craniofacial suture development

Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Staphylococcus aureus Clones

Cdk11-cyclinL controls the assembly of the RNA polymerase II mediator complex

Characterization of the human ESC transcriptome by hybrid sequencing

Circulation of low pathogenic avian influenza (LPAI) viruses in wild birds and poultry in the Netherlands, 2006-2016

Community-Acquired Cavitary Pseudomonas Pneumonia Linked to Use of a Home Humidifier.

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome

Corrigendum to "Community-Acquired Cavitary Pseudomonas Pneumonia Linked to Use of a Home Humidifier".

Deciphering the introduction and transmission of SARS-CoV-2 in the Colombian Amazon Basin

Defining the risk of SARS-CoV-2 variants on immune protection

Determination and inference of eukaryotic transcription factor sequence specificity

Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

Establishing legitimacy and function in the new transcriptome

Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records.

Evidence of Intercontinental Spread and Uncommon Variants of Low-Pathogenicity Avian Influenza Viruses in Ducks Overwintering in Guatemala

FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research

Family matters: gene regulation by metal-dependent transcription factors

Fission yeast Cdk7 controls gene expression through both its CAK and C-terminal domain kinase activities

Gastrointestinal involvement attenuates COVID-19 severity and mortality

Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism

Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient

Global analysis of SUMO chain function reveals multiple roles in chromatin regulation

Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study.

High capsid-genome correlation facilitates creation of AAV libraries for directed evolution

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

In control: systematic assessment of microarray performance

Influenza A variants with reduced susceptibility to baloxavir isolated from Japanese patients are fit and transmit through respiratory droplets

Influenza virus infection causes global RNAPII termination defects

Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice

Introductions and early spread of SARS-CoV-2 in the New York City area

Introductions and early spread of SARS-CoV-2 in the New York City area

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

Mandibular dysmorphology due to abnormal embryonic osteogenesis in FGFR2-related craniosynostosis mice.

Mapping SARS-CoV-2 antigenic relationships and serological responses

Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets

Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave

Monitoring global messenger RNA changes in externally controlled microarray experiments.

Most "dark matter" transcripts are associated with known genes

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

Neutrophil Recruitment and Barrier Impairment in Celiac Disease: A Genomic Study

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway

Prothymosin α variants isolated from CD8+ T cells and cervicovaginal fluid suppress HIV-1 replication through type I interferon induction

Real Time Investigation of a large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

Repeated cross-sectional sero-monitoring of SARS-CoV-2 in New York City

Response to “The Reality of Pervasive Transcription”

Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein.

SARS-CoV-2-specific IgA and limited inflammatory cytokines are present in the stool of select patients with acute COVID-19

Senataxin suppresses the antiviral transcriptional response and controls viral biogenesis

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays ⬇️

Shedding of Viable SARS-CoV-2 after Immunosuppressive Therapy for Cancer

TEAM: a tool for the integration of expression, and linkage and association maps

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

The FaceBase Consortium: a comprehensive resource for craniofacial researchers

The PsychENCODE project

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

The SARS-CoV-2 B.1.1.529 Omicron virus causes attenuated infection and disease in mice and hamsters

The draft genome and transcriptome of Cannabis sativa

The genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia

Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation