Lista de obras - Jean-Loup Faulon - Dominio Público Uruguay

3-D structural modeling of humic acids through experimental characterization, computer assisted structure elucidation and atomistic simulations. 1. Chelsea soil humic acid.

artículo científico publicado en 2003

A Sense of Balance: Experimental Investigation and Modeling of a Malonyl-CoA Sensor in Escherichia coli.

artículo científico publicado en 2015

A dataset of small molecules triggering transcriptional and translational cellular responses

artículo científico publicado en 2018

A deterministic algorithm for constrained enumeration of transmembrane protein folds

artículo científico publicado en 2005

A retrosynthetic biology approach to metabolic pathway design for therapeutic production

artículo científico publicado en 2011

A retrosynthetic biology approach to therapeutics: from conception to delivery ⬇️

artículo científico publicado el 2 de abril de 2012

An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals

artículo científico publicado en 2018

Boolean dynamics of genetic regulatory networks inferred from microarray time series data

artículo científico publicado en 2007

Building a minimal and generalizable model of transcription factor-based biosensors: Showcasing flavonoids.

artículo científico publicado en 2018

Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.

artículo científico

Cheminformatics ⬇️

artículo científico publicado en 2012

Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

artículo científico publicado en 2011

Computer-aided design for metabolic engineering

artículo científico

Custom-made transcriptional biosensors for metabolic engineering

scientific article published on 25 March 2019

Data mining PubChem using a support vector machine with the Signature molecular descriptor: classification of factor XIa inhibitors

artículo científico publicado en 2008

Designing novel polymers with targeted properties using the signature molecular descriptor

artículo científico publicado en 2006

Developing a methodology for an inverse quantitative structure-activity relationship using the signature molecular descriptor

artículo científico publicado en 2002

Development of a Biosensor for Detection of Benzoic Acid Derivatives in Saccharomyces cerevisiae

artículo científico publicado en 2019

Editorial: Synthetic Biology – applying new paradigms at the interface of fundamental research and innovation ⬇️

artículo científico publicado el 1 de julio de 2011

Engineering antibiotic production and overcoming bacterial resistance ⬇️

artículo científico publicado el 10 de junio de 2011

Enumerating Molecules

artículo científico publicado en 2005

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

artículo científico publicado en 2012

Enzyme Discovery: Enzyme Selection and Pathway Design

artículo científico publicado en 2018

Expanding Biosensing Abilities through Computer-Aided Design of Metabolic Pathways

artículo científico publicado en 2016

Exploring the conformational space of membrane protein folds matching distance constraints

artículo científico publicado en 2003

Extended Metabolic Space Modeling

artículo científico publicado en 2018

Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.

artículo científico publicado en 2007

Identification of expression patterns of IL-2-responsive genes in the murine T cell line CTLL-2.

artículo científico publicado en 2007

Large scale active-learning-guided exploration for in vitro protein production optimization

scientific article published on 20 April 2020

Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli

artículo científico publicado en 2019

Mapping the patent landscape of synthetic biology for fine chemical production pathways

artículo científico publicado en 2016

Metabolic Perceptrons for Neural Computing in Biological Systems

Metabolic perceptrons for neural computing in biological systems

scientific article published on 28 August 2019

Microbial Genes for a Circular and Sustainable Bio-PET Economy.

artículo científico publicado en 2019

Models for Cell-Free Synthetic Biology: Make Prototyping Easier, Better, and Faster

scientific article published on 29 November 2018

Molecular signatures-based prediction of enzyme promiscuity

artículo científico publicado en 2010

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.

artículo científico publicado en 2017

OMG: Open Molecule Generator

artículo científico publicado en 2012

On using graph-equivalent classes for the structure elucidation of large molecules

artículo científico publicado en 1992

Optimal bundling of transmembrane helices using sparse distance constraints

artículo científico publicado en 2004

Optimizing Cell-Free Biosensors to Monitor Enzymatic Production

artículo científico publicado en 2019

Origins of specificity and promiscuity in metabolic networks

artículo científico publicado en 2011

PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

scholarly article published 15 September 2017

PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts

scholarly article by Neil Swainston published in February 2018

Plug-and-Play Metabolic Transducers Expand the Chemical Detection Space of Cell-Free Biosensors

Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors

PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling

artículo científico publicado en 2014

Predicting protein-protein interactions using signature products

artículo científico publicado en 2004

Prediction of beta-strand packing interactions using the signature product

artículo científico publicado en 2005

Reinforcement Learning for Bioretrosynthesis

scientific article published on 30 December 2019

RetroPath2.0: A retrosynthesis workflow for metabolic engineers

article published in 2017

RetroPath2.0: A retrosynthesis workflow for metabolic engineers.

artículo científico publicado en 2017

RetroRules: a database of reaction rules for engineering biology

artículo científico publicado en 2019

Retropath: automated pipeline for embedded metabolic circuits

artículo científico publicado en 2013

Retrosynthetic Design of Heterologous Pathways ⬇️

artículo científico publicado el 1 de enero de 2013

Reverse engineering chemical structures from molecular descriptors: how many solutions?

artículo científico publicado en 2005

SYNBIOCHEM-a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals

artículo científico publicado en 2016

Selenzyme: Enzyme selection tool for pathway design

artículo científico publicado en 2018

Selenzyme: Enzyme selection tool for pathway design

Semisupervised Gaussian Process for Automated Enzyme Search.

artículo científico publicado en 2016

SensiPath: computer-aided design of sensing-enabling metabolic pathways

artículo científico publicado en 2016

Sensing new chemicals with bacterial transcription factors

artículo científico publicado en 2016

Sensitivity analysis of a computational model of the IKK NF-kappaB IkappaBalpha A20 signal transduction network

artículo científico publicado en 2007

Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks

artículo científico publicado en 2013

Stereo signature molecular descriptor

artículo científico publicado en 2013

Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules

artículo científico publicado en 1994

Stochastic Generator of Chemical Structure. 2. Using Simulated Annealing To Search the Space of Constitutional Isomers

artículo científico publicado en 1996

Systems chemical biology

artículo científico publicado en 2007

The signature molecular descriptor. 1. Using extended valence sequences in QSAR and QSPR studies

artículo científico publicado en 2003

The signature molecular descriptor. 2. Enumerating molecules from their extended valence sequences

artículo científico publicado en 2003

The signature molecular descriptor. 3. Inverse-quantitative structure-activity relationship of ICAM-1 inhibitory peptides

artículo científico publicado en 2004

The signature molecular descriptor. 4. Canonizing molecules using extended valence sequences.

artículo científico publicado en 2004

Toward Quantitative Structure-Property Relationships for Charge Transfer Rates of Polycyclic Aromatic Hydrocarbons

artículo científico publicado en 2011

Understanding virulence mechanisms in M. tuberculosis infection via A circuit-based simulation framework

artículo científico publicado en 2008

Use of a designed peptide array to infer dissociation trends for nontryptic peptides in quadrupole ion trap and quadrupole time-of-flight mass spectrometry

artículo científico publicado en 2007

Using product kernels to predict protein interactions

artículo científico publicado en 2008

Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering

artículo científico publicado en 2014

XTMS: pathway design in an eXTended metabolic space

artículo científico publicado en 2014

biochem4j: Integrated and extensible biochemical knowledge through graph databases.

artículo científico

Lista de obras de Jean-Loup Faulon

3-D structural modeling of humic acids through experimental characterization, computer assisted structure elucidation and atomistic simulations. 1. Chelsea soil humic acid.

A Sense of Balance: Experimental Investigation and Modeling of a Malonyl-CoA Sensor in Escherichia coli.

A dataset of small molecules triggering transcriptional and translational cellular responses

A deterministic algorithm for constrained enumeration of transmembrane protein folds

A retrosynthetic biology approach to metabolic pathway design for therapeutic production

A retrosynthetic biology approach to therapeutics: from conception to delivery ⬇️

An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals

Boolean dynamics of genetic regulatory networks inferred from microarray time series data

Building a minimal and generalizable model of transcription factor-based biosensors: Showcasing flavonoids.

Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.

Cheminformatics ⬇️

Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

Computer-aided design for metabolic engineering

Custom-made transcriptional biosensors for metabolic engineering

Data mining PubChem using a support vector machine with the Signature molecular descriptor: classification of factor XIa inhibitors

Designing novel polymers with targeted properties using the signature molecular descriptor

Developing a methodology for an inverse quantitative structure-activity relationship using the signature molecular descriptor

Development of a Biosensor for Detection of Benzoic Acid Derivatives in Saccharomyces cerevisiae

Editorial: Synthetic Biology – applying new paradigms at the interface of fundamental research and innovation ⬇️

Engineering antibiotic production and overcoming bacterial resistance ⬇️

Enumerating Molecules

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

Enzyme Discovery: Enzyme Selection and Pathway Design

Expanding Biosensing Abilities through Computer-Aided Design of Metabolic Pathways

Exploring the conformational space of membrane protein folds matching distance constraints

Extended Metabolic Space Modeling

Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.

Identification of expression patterns of IL-2-responsive genes in the murine T cell line CTLL-2.

Large scale active-learning-guided exploration for in vitro protein production optimization

Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli

Mapping the patent landscape of synthetic biology for fine chemical production pathways

Metabolic Perceptrons for Neural Computing in Biological Systems

Metabolic perceptrons for neural computing in biological systems

Microbial Genes for a Circular and Sustainable Bio-PET Economy.

Models for Cell-Free Synthetic Biology: Make Prototyping Easier, Better, and Faster

Molecular signatures-based prediction of enzyme promiscuity

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.

OMG: Open Molecule Generator

On using graph-equivalent classes for the structure elucidation of large molecules

Optimal bundling of transmembrane helices using sparse distance constraints

Optimizing Cell-Free Biosensors to Monitor Enzymatic Production

Origins of specificity and promiscuity in metabolic networks

PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts

Plug-and-Play Metabolic Transducers Expand the Chemical Detection Space of Cell-Free Biosensors

Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors

PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling

Predicting protein-protein interactions using signature products

Prediction of beta-strand packing interactions using the signature product

Reinforcement Learning for Bioretrosynthesis

RetroPath2.0: A retrosynthesis workflow for metabolic engineers

RetroPath2.0: A retrosynthesis workflow for metabolic engineers.

RetroRules: a database of reaction rules for engineering biology

Retropath: automated pipeline for embedded metabolic circuits

Retrosynthetic Design of Heterologous Pathways ⬇️

Reverse engineering chemical structures from molecular descriptors: how many solutions?

SYNBIOCHEM-a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals

Selenzyme: Enzyme selection tool for pathway design

Selenzyme: Enzyme selection tool for pathway design

Semisupervised Gaussian Process for Automated Enzyme Search.

SensiPath: computer-aided design of sensing-enabling metabolic pathways

Sensing new chemicals with bacterial transcription factors

Sensitivity analysis of a computational model of the IKK NF-kappaB IkappaBalpha A20 signal transduction network

Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks

Stereo signature molecular descriptor

Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules

Stochastic Generator of Chemical Structure. 2. Using Simulated Annealing To Search the Space of Constitutional Isomers

Systems chemical biology

The signature molecular descriptor. 1. Using extended valence sequences in QSAR and QSPR studies

The signature molecular descriptor. 2. Enumerating molecules from their extended valence sequences

The signature molecular descriptor. 3. Inverse-quantitative structure-activity relationship of ICAM-1 inhibitory peptides

The signature molecular descriptor. 4. Canonizing molecules using extended valence sequences.

Toward Quantitative Structure-Property Relationships for Charge Transfer Rates of Polycyclic Aromatic Hydrocarbons

Understanding virulence mechanisms in M. tuberculosis infection via A circuit-based simulation framework

Use of a designed peptide array to infer dissociation trends for nontryptic peptides in quadrupole ion trap and quadrupole time-of-flight mass spectrometry

Using product kernels to predict protein interactions

Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering

XTMS: pathway design in an eXTended metabolic space