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A joint cross-border investigation of a cluster of multidrug-resistant tuberculosis in Austria, Romania and Germany in 2014 using classic, genotyping and whole genome sequencing methods: lessons learnt

artículo científico publicado en 2017

A novel multi SNP based method for the identification of subspecies and associated lineages and sub-lineages of the Mycobacterium tuberculosis complex by whole genome sequencing

scholarly article published 5 November 2017

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

artículo científico publicado en 2020

A snapshot of the predominant single nucleotide polymorphism cluster groups of Mycobacterium tuberculosis clinical isolates in Delhi, India

artículo científico publicado en 2016

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

scientific article published on 28 November 2019

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches.

artículo científico publicado en 2018

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

artículo científico publicado en 2019

Aortic Endograft Infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014

article

Application of machine learning techniques to tuberculosis drug resistance analysis

scholarly article by Samaneh Kouchaki et al published 21 November 2018 in Bioinformatics

Comment on: characterization of the embB gene in Mycobacterium tuberculosis isolates from Barcelona and rapid detection of main mutations related to ethambutol resistance using a low-density DNA array

artículo científico publicado en 2014

Comparative analysis of phenotypic and genotypic antibiotic susceptibility patterns in Mycobacterium avium complex

scientific article published on 05 March 2020

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

artículo científico publicado en 2018

Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

artículo científico publicado en 2018

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

artículo científico publicado en 2016

Delamanid and Bedaquiline Resistance in Mycobacterium tuberculosis Ancestral Beijing Genotype Causing Extensively Drug-Resistant Tuberculosis in a Tibetan Refugee.

artículo científico publicado en 2016

Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP

artículo científico publicado en 2020

Drug-resistance profiling and transmission dynamics of multidrug-resistant in Saudi Arabia revealed by whole genome sequencing

article

Emended description of Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus and Mycobacteriumabscessus subsp. bolletii and designation of Mycobacteriumabscessus subsp. massiliense comb. nov.

artículo científico publicado en 2016

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

artículo científico publicado en 2015

Extent of transmission captured by contact tracing in a tuberculosis high endemic setting

article

Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study.

artículo científico publicado en 2018

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study

artículo científico

Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System

article

High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial

artículo científico publicado en 2017

High potency of sequential therapy with only β-lactam antibiotics

artículo científico publicado en 2021

IS6110 fingerprinting of drug-resistant Mycobacterium tuberculosis strains isolated in Germany during 1995 ⬇️

artículo científico publicado el 1 de diciembre de 1997

Impact of Genetic Diversity on the Biology of Mycobacterium tuberculosis Complex Strains

artículo científico publicado en 2016

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak

scientific article published on 30 September 2020

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

artículo científico publicado en 2018

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia

artículo científico publicado en 2019

Loss of Mobile Genomic Islands in Metal-Resistant, Hydrogen-Oxidizing Cupriavidus metallidurans

artículo científico publicado en 2022

MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era

artículo científico publicado en 2020

MTBseq: a comprehensive pipeline for whole genome sequence analysis of complex isolates

artículo científico publicado en 2018

Molecular characterization of rifampin- and isoniazid-resistant Mycobacterium tuberculosis strains isolated in Poland

artículo científico publicado en 2004

Molecular clues of a microepidemy among homeless tuberculosis patients in Budapest due to a new and local Mycobacterium tuberculosis clade

artículo científico publicado en 2007

Multidrug- and Extensively Drug-Resistant Mycobacterium tuberculosis Beijing Clades, Ukraine, 2015

artículo científico publicado en 2020

Mycobacterium abscessus in patients with cystic fibrosis: low impact of inter-human transmission in Italy.

artículo científico publicado en 2017

Mycobacterium abscessus, a taxonomic puzzle

artículo científico publicado en 2017

Mycobacterium bovis Persistence in Two Different Captive Wild Animal Populations in Germany: a Longitudinal Molecular Epidemiological Study Revealing Pathogen Transmission by Whole-Genome Sequencing

article

Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

artículo científico publicado en 2006

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv

Mycobacterium tuberculosis embB Codon 306 Mutations Confer Moderately Increased Resistance to Ethambutol In Vitro and In Vivo ⬇️

artículo científico publicado el 28 de marzo de 2011

Mycobacterium tuberculosis pyrazinamide resistance determinants: a multicenter study

artículo científico publicado en 2014

Negative and Positive Predictive Value of a Whole-Blood Interferon-γ Release Assay for Developing Active Tuberculosis ⬇️

artículo científico publicado el 27 de agosto de 2010

New World Health Organization Treatment Recommendations for Multidrug-Resistant Tuberculosis: Are We Well Enough Prepared?

scientific article published on 01 August 2019

No evidence for acquired mutations associated with cytochrome -inhibitor resistance in 13,559 clinical complex isolates

article

One-year surveillance of SARS-CoV-2 transmission of the ELISA cohort: A model for population-based monitoring of infection risk

artículo científico publicado en 2022

Origin, spread and demography of the Mycobacterium tuberculosis complex

artículo científico publicado en 2008

Pathogen-based precision medicine for drug-resistant tuberculosis

artículo científico publicado en 2018

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

artículo científico publicado en 2015

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

scientific article published on 06 March 2020

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

artículo científico publicado en 2014

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

artículo científico publicado en 2018

Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis

artículo científico publicado en 2006

Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates

artículo científico publicado en 2013

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

artículo científico publicado en 2015

Rapid genomic first- and second-line drug resistance prediction from clinical Mycobacterium tuberculosis specimens using Deeplex®-MycTB

scientific article published on 06 August 2020

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study ⬇️

artículo científico publicado en 2016

Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis"

artículo científico publicado en 2018

Reply: Call for Regular Susceptibility Testing of Bedaquiline and Delamanid.

artículo científico publicado en 2016

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex

scientific article published on 24 May 2019

Role of alanine racemase mutations in Mycobacterium tuberculosis D-cycloserine resistance

artículo científico publicado en 2017

SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex

scholarly article by Samuel Lipworth et al published March 2019 in Emerging Infectious Diseases

Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays

artículo científico publicado en 2017

Special Issue on Molecular evolution, epidemiology and pathogenesis of Mycobacterium tuberculosis and other mycobacteria

scholarly article by Igor Mokrousov et al published June 2012 in Infection, Genetics and Evolution

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex

artículo científico publicado en 2017

The Genetic Transformation of Chlamydia pneumoniae

article

The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis

artículo científico publicado en 2017

The genetic diversity of multi and extensively drug resistant in the capital of Iran revealed by whole genome sequencing

scientific article published on 02 January 2019

The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

artículo científico publicado en 2020

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology

article

Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases

scientific article published on 01 December 2019

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

artículo científico publicado en 2015

Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region

scientific article published in 2023

Use of a Whole Genome Sequencing-based approach for Mycobacterium tuberculosis surveillance in Europe in 2017-2019: an ECDC pilot study

scientific article published on 30 July 2020

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis.

artículo científico publicado en 2017

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

artículo científico publicado en 2019

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients

artículo científico publicado en 2013

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

artículo científico publicado en 2013

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

artículo científico publicado en 2015

Whole-genome sequencing for risk assessment of long-term Shiga toxin-producing Escherichia coli

artículo científico publicado en 2014

Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.

artículo científico publicado en 2014

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