Lista de obras - Nicolas Salamin - Dominio Público Uruguay

60 million years of co-divergence in the fig-wasp symbiosis

artículo científico publicado en 2005

A cautionary note on the use of genotype callers in Phylogenomics

artículo científico publicado en 2020

A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms

artículo científico publicado en 2018

A generalized mechanistic codon model

artículo científico publicado en 2014

A multi‐platform package for the analysis of intra‐ and interspecific trait evolution

artículo científico publicado en 2020

A process‐based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages

artículo científico publicado en 2019

Accelerating Bayesian inference for evolutionary biology models

artículo científico publicado en 2016

Adaptive divergence of ancient gene duplicates in the avian MHC class II beta.

artículo científico publicado en 2010

Assessing internal support with large phylogenetic DNA matrices

scientific article published on 01 June 2003

Assessing rapid evolution in a changing environment

artículo científico publicado en 2010

Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions?

artículo científico publicado en 2015

Bayesian estimation of speciation and extinction from incomplete fossil occurrence data

artículo científico publicado en 2014

Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes

artículo científico publicado en 2008

Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian Approach

artículo científico publicado en 2016

Building Supertrees: An Empirical Assessment Using the Grass Family (Poaceae)

article published in 2002

C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.

artículo científico publicado en 2007

Climate change effects on animal and plant phylogenetic diversity in southern Africa

article

Clownfishes evolution below and above the species level.

artículo científico publicado en 2018

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree

artículo científico publicado en 2015

CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates

article

Combining food web and species distribution models for improved community projections

artículo científico publicado en 2013

Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study

artículo científico publicado en 2010

Conceptual and empirical bridges between micro- and macroevolution

artículo científico publicado en 2023

Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers

Convergent evolution of floral signals underlies the success of Neotropical orchids

artículo científico publicado en 2013

Correction to 'Land plants and DNA barcodes: short-term and long-term goals'.

artículo científico publicado en 2016

DNA banking for plant breeding, biotechnology and biodiversity evaluation

artículo científico publicado en 2007

Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae

artículo científico publicado en 2015

Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions ⬇️

artículo científico publicado en 2015

Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences

article

Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish

scientific article published on 29 January 2019

Different rates of defense evolution and niche preferences in clonal and nonclonal milkweeds (Asclepias spp.).

artículo científico publicado en 2015

Duplication history and molecular evolution of the rbcS multigene family in angiosperms

artículo científico publicado en 2019

ENDOTHERMY, THERMAL NICHE EVOLUTION AND THE DISTRIBUTION OF VERTEBRATE DIVERSITY

Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors

artículo científico publicado en 2019

Effect of genetic convergence on phylogenetic inference

artículo científico publicado en 2011

Effects of a fire response trait on diversification in replicated radiations

artículo científico publicado en 2013

Effects of phylogenetic signal on ancestral state reconstruction

artículo científico publicado en 2012

Environment and evolutionary history shape phylogenetic turnover in European tetrapods

artículo científico publicado en 2019

Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype

artículo científico publicado en 2008

Evolution of a supergene that regulates a trans-species social polymorphism

scientific article published on 20 January 2020

Evolution of life cycles and reproductive traits: Insights from the brown algae

artículo científico publicado en 2021

Evolutionary footprint of coevolving positions in genes.

artículo científico publicado en 2014

Evolutionary history of New World monkeys revealed by molecular and fossil data

Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics

artículo científico publicado en 2009

Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution

artículo científico publicado en 2008

Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

artículo científico publicado en 2008

Exotic taxa less related to native species are more invasive ⬇️

artículo científico publicado en 2006

Exploring the Macroevolutionary Signature of Asymmetric Inheritance at Speciation

First draft genome of an iconic clownfish species (Amphiprion frenatus).

artículo científico publicado en 2018

Flowering date of taxonomic families predicts phenological sensitivity to temperature: Implications for forecasting the effects of climate change on unstudied taxa

artículo científico publicado en 2013

Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data

artículo científico publicado en 2016

Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)

artículo científico publicado en 2021

Fossils matter: improved estimates of divergence times in Pinus reveal older diversification

article

Fossils matter: improved estimates of divergence times in Pinus reveal older diversification.

artículo científico publicado en 2017

Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing

artículo científico publicado en 2016

Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation

scientific article published on 16 July 2020

Genomics of clownfish adaptation to sea anemones: investigating the genetic bases of the acquisition of the mutualism and the diversification along host usage and habitat gradients

artículo científico

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae).

artículo científico publicado en 2014

High Rate of Protein Coding Sequence Evolution and Species Diversification in the Lycaenids

scientific article published in 2017

Host specialist clownfishes are environmental niche generalists

artículo científico publicado en 2014

How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared.

artículo científico publicado en 2015

Howling from the past: historical phylogeography and diversity losses in European grey wolves

scientific article published on 01 August 2018

Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae.

artículo científico publicado en 2017

Hybridisation and diversification in the adaptive radiation of clownfishes

artículo científico publicado en 2014

Implementation of biotic interactions in niche analyses unravels the patterns underneath community composition in clownfishes

Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework

scientific article published on 12 September 2019

Improving spatial predictions of taxonomic, functional and phylogenetic diversity

scholarly article by Manuela D'Amen et al published 12 June 2017 in Journal of Ecology

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism

artículo científico publicado en 2012

Insights into the Genomics of Clownfish Adaptive Radiation: Genetic Basis of the Mutualism with Sea Anemones

scientific article published in 2019

Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl.

artículo científico publicado en 2010

Integrating phylogeny into studies of C4 variation in the grasses

artículo científico publicado en 2009

Interspecific correlation between red blood cell mitochondrial ROS production, cardiolipin content and longevity in birds

artículo científico publicado en 2016

Land plants and DNA barcodes: short-term and long-term goals

artículo científico publicado en 2005

Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling

artículo científico publicado en 2008

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

scientific article published in 2019

Linking life-history traits, ecology, and niche breadth evolution in North American eriogonoids (Polygonaceae).

artículo científico publicado en 2013

Linking micro and macroevolution in the presence of migration

scientific article published on 20 November 2019

Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna

article by Loïc Pellissier et al published 12 July 2012 in Journal of Biogeography

Measurement errors should always be incorporated in phylogenetic comparative analysis

article

Modeling Codon Rate Variation: Robust Inference of Protein and Nucleotide Selection

Molecular dating, evolutionary rates, and the age of the grasses.

artículo científico publicado en 2013

Molecular ecology studies of species radiations: current research gaps, opportunities and challenges

artículo científico publicado en 2017

Molecular evolutionary rates are not correlated with temperature and latitude in Squamata: an exception to the metabolic theory of ecology?

artículo científico publicado en 2016

Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations

artículo científico publicado en 2006

Mutualism with sea anemones triggered the adaptive radiation of clownfishes

artículo científico publicado en 2012

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

artículo científico publicado en 2011

Niche width impacts vertebrate diversification

artículo científico publicado en 2016

No evidence for the radiation time lag model after whole genome duplications in Teleostei

artículo científico publicado en 2017

No evidence for the radiation time lag model after whole genome duplications in Teleostei

Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

artículo científico publicado en 2008

Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family

artículo científico publicado en 2012

Oligocene CO2 decline promoted C4 photosynthesis in grasses.

artículo científico publicado en 2007

On the effect of asymmetrical trait inheritance on models of trait evolution

artículo científico publicado en 2020

One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions

artículo científico publicado en 2017

Optimization strategies for fast detection of positive selection on phylogenetic trees

artículo científico publicado en 2014

Phylogenetic analyses of plastid and nuclear DNA sequences indicate a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae)

scientific article published in 2010

Phylogenetic conservatism in plant phenology

article

Phylogenetic plant community structure along elevation is lineage specific

artículo científico publicado en 2013

Phylogenetics of Miscanthus , Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers

artículo científico publicado en 2002

Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence.

artículo científico publicado en 2009

Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

artículo científico publicado en 2021

Phylogeny Reconstruction and Functional Constraints in Organellar Genomes: Plastid atpB and rbcL Sequences Versus Animal Mitochondrion

scholarly article by Vincent Savolainen et al published 1 July 2002 in Systematic Biology

Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau

artículo científico publicado en 2015

Plant DNA barcodes and the influence of gene flow

scientific article published on 07 March 2012

Plant functional and phylogenetic turnover correlate with climate and land use in the Western Swiss Alps

article

Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs

artículo científico publicado en 2006

Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.

artículo científico publicado en 2018

Population Genetic Structure and Demographic History of Primula fasciculata in Southwest China

artículo científico publicado en 2020

Prototypic SNARE Proteins Are Encoded in the Genomes of Heimdallarchaeota, Potentially Bridging the Gap between the Prokaryotes and Eukaryotes

scientific article published on 14 May 2020

Publisher Correction: The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity

artículo científico publicado en 2018

PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data

article published in 2014

Rapid climate change results in long-lasting spatial homogenization of phylogenetic diversity

scientific article published on 16 September 2020

Resprouter fraction in Cape Restionaceae assemblages varies with climate and soil type

article published in 2016

Scale-dependent adaptive evolution and morphological convergence to climatic niche in Californian eriogonoids (Polygonaceae)

Selection on a eumelanic ornament is stronger in the tropics than in temperate zones in the worldwide-distributed barn owl.

artículo científico publicado en 2008

Selection on the Major Color Gene Melanocortin-1-Receptor Shaped the Evolution of the Melanocortin System Genes

artículo científico publicado en 2017

Selectome update: quality control and computational improvements to a database of positive selection

artículo científico publicado en 2013

Sensitivity of Spring Phenology to Warming Across Temporal and Spatial Climate Gradients in Two Independent Databases

article

Simultaneous Bayesian inference of phylogeny and molecular coevolution

scholarly article by Xavier Meyer et al published 12 March 2019 in Proceedings of the National Academy of Sciences of the United States of America

SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model

artículo científico publicado en 2012

Slowly but surely: gradual diversification and phenotypic evolution in the hyper-diverse tree fern family Cyatheaceae

artículo científico publicado en 2020

Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps

artículo científico publicado en 2014

Spatial predictions of phylogenetic diversity in conservation decision making

artículo científico publicado en 2011

State aggregation for fast likelihood computations in molecular evolution

artículo científico publicado en 2017

Sympatric speciation in palms on an oceanic island

artículo científico publicado en 2006

Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae

artículo científico publicado en 2019

Taxogenomics of the order Chlamydiales

artículo científico publicado en 2015

Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences

scientific article published in 2012

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

artículo científico publicado en 2016

The evolutionary host switches of Polychromophilus: a multi-gene phylogeny of the bat malaria genus suggests a second invasion of mammals by a haemosporidian parasite ⬇️

artículo científico publicado en 2012

The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity

article published in 2018

The origins and diversification of C4grasses and savanna-adapted ungulates

The origins of C4 grasslands: integrating evolutionary and ecosystem science.

artículo científico publicado en 2010

The radiation of the clownfishes has two geographical replicates

The role of clade competition in the diversification of North American canids

artículo científico publicado en 2015

The role of climatic tolerances and seed traits in reduced extinction rates of temperate polygonaceae

artículo científico publicado en 2014

The simultaneous inducibility of phytochemicals related to plant direct and indirect defences against herbivores is stronger at low elevation

article

Thyroid hormones regulate the formation and environmental plasticity of white bars in clownfishes

artículo científico publicado en 2021

Towards building the tree of life: a simulation study for all angiosperm genera

artículo científico publicado en 2005

Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae).

artículo científico publicado en 2017

Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae)

artículo científico publicado en 2012

Turnover of plant lineages shapes herbivore phylogenetic beta diversity along ecological gradients

artículo científico publicado en 2013

Warming experiments underpredict plant phenological responses to climate change

artículo científico publicado en 2012

Why are some species older than others? A large-scale study of vertebrates

artículo científico publicado en 2016

ecospat: an R package to support spatial analyses and modeling of species niches and distributions

article

gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution.

artículo científico publicado en 2012

‘Next generation’ biogeography: towards understanding the drivers of species diversification and persistence

article

Lista de obras de Nicolas Salamin

60 million years of co-divergence in the fig-wasp symbiosis

A cautionary note on the use of genotype callers in Phylogenomics

A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms

A generalized mechanistic codon model

A multi‐platform package for the analysis of intra‐ and interspecific trait evolution

A process‐based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages

Accelerating Bayesian inference for evolutionary biology models

Adaptive divergence of ancient gene duplicates in the avian MHC class II beta.

Assessing internal support with large phylogenetic DNA matrices

Assessing rapid evolution in a changing environment

Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions?

Bayesian estimation of speciation and extinction from incomplete fossil occurrence data

Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes

Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian Approach

Building Supertrees: An Empirical Assessment Using the Grass Family (Poaceae)

C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.

Climate change effects on animal and plant phylogenetic diversity in southern Africa

Clownfishes evolution below and above the species level.

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree

CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates

Combining food web and species distribution models for improved community projections

Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study

Conceptual and empirical bridges between micro- and macroevolution

Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers

Convergent evolution of floral signals underlies the success of Neotropical orchids

Correction to 'Land plants and DNA barcodes: short-term and long-term goals'.

DNA banking for plant breeding, biotechnology and biodiversity evaluation

Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae

Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions ⬇️

Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences

Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish

Different rates of defense evolution and niche preferences in clonal and nonclonal milkweeds (Asclepias spp.).

Duplication history and molecular evolution of the rbcS multigene family in angiosperms

ENDOTHERMY, THERMAL NICHE EVOLUTION AND THE DISTRIBUTION OF VERTEBRATE DIVERSITY

Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors

Effect of genetic convergence on phylogenetic inference

Effects of a fire response trait on diversification in replicated radiations

Effects of phylogenetic signal on ancestral state reconstruction

Environment and evolutionary history shape phylogenetic turnover in European tetrapods

Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype

Evolution of a supergene that regulates a trans-species social polymorphism

Evolution of life cycles and reproductive traits: Insights from the brown algae

Evolutionary footprint of coevolving positions in genes.

Evolutionary history of New World monkeys revealed by molecular and fossil data

Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics

Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution

Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

Exotic taxa less related to native species are more invasive ⬇️

Exploring the Macroevolutionary Signature of Asymmetric Inheritance at Speciation

First draft genome of an iconic clownfish species (Amphiprion frenatus).

Flowering date of taxonomic families predicts phenological sensitivity to temperature: Implications for forecasting the effects of climate change on unstudied taxa

Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data

Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)

Fossils matter: improved estimates of divergence times in Pinus reveal older diversification

Fossils matter: improved estimates of divergence times in Pinus reveal older diversification.

Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing

Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation

Genomics of clownfish adaptation to sea anemones: investigating the genetic bases of the acquisition of the mutualism and the diversification along host usage and habitat gradients

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae).

High Rate of Protein Coding Sequence Evolution and Species Diversification in the Lycaenids

Host specialist clownfishes are environmental niche generalists

How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared.

Howling from the past: historical phylogeography and diversity losses in European grey wolves

Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae.

Hybridisation and diversification in the adaptive radiation of clownfishes

Implementation of biotic interactions in niche analyses unravels the patterns underneath community composition in clownfishes

Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework

Improving spatial predictions of taxonomic, functional and phylogenetic diversity

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism

Insights into the Genomics of Clownfish Adaptive Radiation: Genetic Basis of the Mutualism with Sea Anemones

Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl.

Integrating phylogeny into studies of C4 variation in the grasses

Interspecific correlation between red blood cell mitochondrial ROS production, cardiolipin content and longevity in birds

Land plants and DNA barcodes: short-term and long-term goals

Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

Linking life-history traits, ecology, and niche breadth evolution in North American eriogonoids (Polygonaceae).

Linking micro and macroevolution in the presence of migration

Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna