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Lista de obras de Graziano Pesole

A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy)

artículo científico publicado en 2020

A Machine Learning Approach to Parkinson’s Disease Blood Transcriptomics

artículo científico publicado en 2022

A guideline for the annotation of UTR regulatory elements in the UTRsite collection

artículo científico publicado en 2015

A high performance grid-web service framework for the identification of ‘conserved sequence tags’

A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22.

artículo científico publicado en 2005

A novel additional group II intron distinguishes the mitochondrial rps3 gene in gymnosperms.

artículo científico publicado en 2005

A novel computational strategy to identify A-to-I RNA editing sites by RNA-Seq data: de novo detection in human spinal cord tissue

artículo científico publicado en 2012

A platform independent RNA-Seq protocol for the detection of transcriptome complexity

artículo científico publicado en 2013

A statistical method for detecting regions with different evolutionary dynamics in multialigned sequences

artículo científico publicado en 1992

A tandemly repeated DNA family originated from SINE-related elements in the European plethodontid salamanders (Amphibia, Urodela).

artículo científico publicado en 1995

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

artículo científico publicado en 2009

A unique, consistent identifier for alternatively spliced transcript variants

artículo científico publicado en 2009

A-GAME: improving the assembly of pooled functional metagenomics sequence data.

artículo científico publicado en 2018

A-to-I RNA editing in SARS-COV-2: real or artifact?

artículo científico publicado en 2020

ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

artículo científico publicado en 2005

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization

artículo científico publicado en 2006

ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection

artículo científico publicado en 2013

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

artículo científico publicado en 2011

ASPicDB: a database resource for alternative splicing analysis.

artículo científico publicado en 2008

ASPicDB: a database web tool for alternative splicing analysis

artículo científico publicado en 2015

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics

artículo científico publicado en 2009

Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels

artículo científico publicado en 2020

Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs.

artículo científico

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

artículo científico publicado en 2002

Apolipoprotein(a): A Puzzling Evolutionary Story

artículo científico publicado en 1997

Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events

artículo científico publicado en 2014

Ascidian mitogenomics: comparison of evolutionary rates in closely related taxa provides evidence of ongoing speciation events

scientific article published on March 2014

Assembly and characterization of pandemic influenza A H1N1 genome in nasopharyngeal swabs using high-throughput pyrosequencing.

artículo científico publicado en 2011

Assessing computational tools for the discovery of transcription factor binding sites

artículo científico publicado en 2005

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

artículo científico publicado en 2010

BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity

artículo científico publicado en 2015

BCR/ABL1 fusion transcripts generated from alternative splicing: implications for future targeted therapies in Ph+ leukaemias.

artículo científico

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.

artículo científico publicado en 2015

BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology

artículo científico publicado en 2016

Bioinformatics Resources for RNA Editing

artículo científico publicado en 2021

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

artículo científico publicado en 2009

Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.

artículo científico publicado en 2008

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

artículo científico publicado en 2017

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison

artículo científico publicado en 2004

Changes in Escherichia coli transcriptome during acclimatization at low temperature.

artículo científico publicado en 2003

Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area

scientific article published on 16 October 2019

Characterization of Epstein–Barr virus genotypes in multiple sclerosis through next generation sequencing approaches

scholarly article by Giulia Coarelli et al published October 2014 in Journal of Neuroimmunology

Clustering and Assembling Large Transcriptome Datasets by EasyCluster2

article by Vitoantonio Bevilacqua et al published 2013 in Communications in Computer and Information Science

CoVaCS: a consensus variant calling system

artículo científico publicado en 2018

Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer.

artículo científico publicado en 2015

Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-CoV-2

scientific article published on 02 April 2020

Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians

artículo científico publicado en 2004

Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space

artículo científico publicado en 2016

Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis

artículo científico publicado en 2003

Computational methods for ab initio and comparative gene finding

artículo científico publicado en 2010

Computational methods for alternative splicing prediction

artículo científico publicado en 2006

Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian Methods

article

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes

artículo científico publicado en 2020

Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

artículo científico publicado en 2010

Correlated substitution analysis and the prediction of amino acid structural contacts.

artículo científico publicado en 2007

Corrigendum: Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential

artículo científico publicado en 2020

Corrigendum: No Change in the Mucosal Gut Microbiome is Associated with Celiac Disease-Specific Microbiome Alteration in Adult Patients.

artículo científico publicado en 2016

Corrigendum: Profiling RNA editing in human tissues: towards the inosinome Atlas.

artículo científico publicado en 2016

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data

scientific article published on 03 December 2019

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

artículo científico publicado en 2012

Cumulus Cell Transcriptome after Cumulus-Oocyte Complex Exposure to Nanomolar Cadmium in an In Vitro Animal Model of Prepubertal and Adult Age

artículo científico publicado en 2023

Cyclic AMP induces reversible EPAC1 condensates that regulate histone transcription

artículo científico publicado en 2023

DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes

artículo científico publicado en 2005

DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method

artículo científico publicado en 2018

DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions

article

Dealing with the promise of metabarcoding in mega-event biomonitoring: EXPO2015 unedited data

Detecting alternative gene structures from spliced ESTs: a computational approach

artículo científico publicado en 2009

Detection of post-transcriptional RNA editing events

artículo científico publicado en 2015

Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas

artículo científico publicado en 2011

Differences in gene expression and cytokine release profiles highlight the heterogeneity of distinct subsets of adipose tissue-derived stem cells in the subcutaneous and visceral adipose tissue in humans

artículo científico publicado en 2013

Direct evidence that restriction endonucleases may under estimate the degree of divergence between molecules

artículo científico publicado en 1990

Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts.

artículo científico publicado en 2005

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

artículo científico publicado en 2015

Draft Genome Sequences of Six Listeria monocytogenes Strains Isolated from Dairy Products from a Processing Plant in Southern Italy

artículo científico publicado en 2014

Draft Genome Sequences of Three Novel Staphylococcus arlettae Strains Isolated from a Disused Biological Safety Cabinet

scientific article published on 04 October 2018

Draft genome sequence of Acinetobacter sp. neg1 capable of degrading ochratoxin A.

artículo científico publicado en 2015

Draft genome sequence ofSphingobiumsp. strain ba1, resistant to kanamycin and nickel ions

artículo científico publicado en 2014

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma

artículo científico publicado en 2019

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

scientific article published on 21 August 2020

EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

artículo científico publicado en 2014

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data

artículo científico publicado en 2009

Editorial

Elucidating the editome: bioinformatics approaches for RNA editing detection

artículo científico publicado en 2017

Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth

scientific article published on 27 January 2020

Energy biogenesis: one key for coordinating two genomes

artículo científico publicado en 2005

Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7-/- mice

scientific article published on 27 June 2019

Epstein-Barr virus genetic variants are associated with multiple sclerosis

artículo científico publicado en 2015

Erratum to “Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin”

article

Establishing the ELIXIR Microbiome Community

artículo científico publicado en 2024

Estimating the statistical significance of classifiers by varying the number of genes

Evolution of genes and genomes on the Drosophila phylogeny

artículo científico publicado en 2007

Evolution of nuclearly encoded mitochondrial genes in Metazoa

artículo científico publicado en 2005

Evolution of the mitochondrial genetic system: an overview

artículo científico publicado en 2000

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

artículo científico publicado en 2008

Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than in mammals

artículo científico publicado en 1994

Evolutionary analysis of the nucleus-encoded subunits of mammalian cytochrome c oxidase

article

Evolutionary dynamics of mammalian mRNA untranslated regions by comparative analysis of orthologous human, artiodactyl and rodent gene pairs

artículo científico publicado en 2002

Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system

artículo científico publicado en 1999

Exalign: a new method for comparative analysis of exon-intron gene structures

artículo científico

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments

artículo científico publicado en 2011

Exploring the RNA editing potential of RNA-Seq data by ExpEdit

artículo científico publicado en 2015

Expression and genomic analyses of Camelus dromedarius T cell receptor delta (TRD) genes reveal a variable domain repertoire enlargement due to CDR3 diversification and somatic mutation

artículo científico publicado en 2011

Finding Conserved Gene Order Across Multiple Genomes

article

Finding conserved gene order across multiple genomes

scientific article published on 01 January 2007

Functional Integration of mRNA Translational Control Programs

artículo científico publicado en 2015

Functional annotation of a full-length mouse cDNA collection

artículo científico publicado en 2001

GeneSyn: a tool for detecting conserved gene order across genomes

artículo científico publicado en 2004

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags

artículo científico publicado en 2005

Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential

artículo científico publicado en 2019

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

artículo científico publicado en 2015

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

artículo científico publicado en 2008

Genome-wide analysis of differentially expressed genes and splicing isoforms in clear cell renal cell carcinoma

artículo científico publicado en 2013

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes

artículo científico publicado en 2008

Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci

artículo científico publicado en 2008

Geographic Population Structure in Epstein-Barr Virus Revealed by Comparative Genomics

artículo científico publicado en 2016

Global immune disregulation in multiple sclerosis: from the adaptive response to the innate immunity

artículo científico publicado en 2000

Gypsy/Ty3-like elements in the genome of the terrestrial Salamander hydromantes (Amphibia, Urodela).

artículo científico publicado en 1996

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

artículo científico publicado en 2020

HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

artículo científico publicado en 2009

High-Throughput Sequencing to Detect DNA-RNA Changes

artículo científico publicado en 2021

How genomics can help biodiversity conservation

Human Endometrial Microbiota at Term of Normal Pregnancies

scientific article published on 26 November 2019

Human access impacts biodiversity of microscopic animals in sandy beaches

artículo científico publicado en 2020

Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus

artículo científico publicado en 2006

Hypervariability of Ascidian Mitochondrial Gene Order: Exposing the Myth of Deuterostome Organelle Genome Stability

article

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

artículo científico publicado en 2017

Identification and functional characterization of two new transcriptional variants of the human p63 gene

scientific article published on 21 August 2009

Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation

artículo científico publicado en 2010

Identification, molecular characterization, and tissue expression of OVCOV1.

artículo científico publicado en 2002

Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs

article

Intestinal microbiota sustains inflammation and autoimmunity induced by hypomorphic RAG defects

artículo científico publicado en 2016

Investigating Human Mitochondrial Genomes in Single Cells

scientific article published on 11 May 2020

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

scientific article published on 29 January 2020

Isochore specificity of AUG initiator context of human genes

artículo científico publicado en 1999

Jellyfish summer outbreaks as bacterial vectors and potential hazards for marine animals and humans health? The case of Rhizostoma pulmo (Scyphozoa, Cnidaria)

artículo científico publicado en 2019

Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures

scholarly article published 19 November 2018

Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures

scientific article published on 01 April 2020

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

scientific article published on 08 November 2021

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

artículo científico publicado en 2010

Lineage specificity of the evolutionary dynamics of the mtDNA D-loop region in rodents

artículo científico publicado en 2002

Lineage-specific evolution of echinoderm mitochondrial ATP synthase subunit 8.

artículo científico publicado en 1997

Linguistic approaches to the analysis of sequence information

artículo científico publicado en 1994

Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny

artículo científico publicado en 2000

MERGE: a software package for generating a single data-base starting from EMBL and GenBank collections

artículo científico publicado en 1988

MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information: Fig. 1

artículo científico publicado en 2015

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing

artículo científico publicado en 2014

Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications

artículo científico publicado en 1997

Management at the service of research: ReOmicS, a quality management system for omics sciences

artículo científico publicado en 2019

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS

artículo científico publicado en 2017

Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients

artículo científico publicado en 2016

MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.

artículo científico

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa

artículo científico publicado en 2011

MitoZoa: A curated mitochondrial genome database of metazoans for comparative genomics studies

scholarly article by Renato Lupi et al published March 2010 in Mitochondrion

Mitochondrial DNA in metazoa: degree of freedom in a frozen event

artículo científico publicado en 2002

Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue

artículo científico publicado en 2024

Mitochondrial genomes gleaned from human whole-exome sequencing ⬇️

artículo científico publicado el 30 de mayo de 2012

Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters

artículo científico publicado en 2005

Mitogenomics reveals two cryptic species in Ciona intestinalis

artículo científico publicado en 2007

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

artículo científico publicado en 2006

Molecular classification of living organisms

artículo científico publicado en 1995

Molecular clock and gene function

artículo científico publicado en 2003

Molecular strategies in Metazoan genomic evolution

artículo científico publicado en 2002

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

artículo científico publicado en 2012

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer

artículo científico publicado en 2013

Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome

artículo científico publicado en 2022

New Tools for Expression Alternative Splicing Validation

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

artículo científico publicado en 2020

No Change in the Mucosal Gut Microbiome is Associated With Celiac Disease-Specific Microbiome Alteration in Adult Patients

artículo científico publicado en 2016

No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects

artículo científico publicado en 2019

ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data

On the statistical assessment of classifiers using DNA microarray data

artículo científico publicado en 2006

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text ⬇️

artículo científico publicado en 2012

PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences

artículo científico publicado en 2003

Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus

artículo científico publicado en 2007

Phylogenetic analyses: a brief introduction to methods and their application

artículo científico publicado en 2004

Phylogenetic comparison of huntingtin homologues reveals the appearance of a primitive polyQ in sea urchin

artículo científico publicado en 2007

Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide <i>Aphanocladium album</i> in Tomato Plants Infested by <i>Meloidogyne javanica</i>

artículo científico publicado en 2020

Platelets from patients with visceral obesity promote colon cancer growth

artículo científico publicado en 2022

Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing.

artículo científico publicado en 2016

Profiling RNA editing in human tissues: towards the inosinome Atlas

artículo científico publicado en 2015

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

artículo científico publicado en 2009

PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

artículo científico publicado en 2013

Quantifying RNA Editing in Deep Transcriptome Datasets

artículo científico publicado en 2020

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

artículo científico publicado en 2015

REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes

artículo científico publicado en 2018

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

artículo científico publicado en 2017

REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments

artículo científico publicado en 2020

REDItools: high-throughput RNA editing detection made easy ⬇️

artículo científico publicado el 5 de junio de 2013

RNA editing in plants: A comprehensive survey of bioinformatics tools and databases

scientific article published on 02 February 2019

RNA editing signature during myeloid leukemia cell differentiation.

artículo científico publicado en 2017

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

artículo científico publicado en 2004

RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments.

artículo científico publicado en 2018

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

artículo científico publicado en 2021

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

artículo científico publicado en 2022

Reference databases for taxonomic assignment in metagenomics

artículo científico publicado en 2012

Regularized Least Squares Cancer classifiers from DNA microarray data

artículo científico publicado en 2005

Regulation of the expression of CLU isoforms in endometrial proliferative diseases

artículo científico publicado en 2013

SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data

artículo científico publicado en 2012

Seasonal rather than spatial variability drives planktonic and benthic bacterial diversity in a microtidal lagoon and the adjacent open sea.

artículo científico publicado en 2017

Selection of relevant genes in cancer diagnosis based on their prediction accuracy

artículo científico publicado en 2006

Sequence analysis and compositional properties of untranslated regions of human mRNAs

artículo científico publicado en 1994

Single-cell transcriptomics reveals specific RNA editing signatures in the human brain

artículo científico publicado en 2017

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

artículo científico publicado en 2012

Staphylococcus arlettae Genomics: Novel Insights on Candidate Antibiotic Resistance and Virulence Genes in an Emerging Opportunistic Pathogen

scientific article published on 19 November 2019

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements

artículo científico publicado en 2009

Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data

artículo científico publicado en 2007

Structural and Comparative Analyses of Insects Suggest the Presence of an Ultra-Conserved Regulatory Element of the Genes Encoding Vacuolar-Type ATPase Subunits and Assembly Factors

artículo científico publicado en 2023

Structural and compositional features of untranslated regions of eukaryotic mRNAs

article

Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin

artículo científico publicado en 2002

Structural and functional features of eukaryotic mRNA untranslated regions

artículo científico publicado en 2001

T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP.

artículo científico publicado en 2017

TRIM8 Blunts the Pro-proliferative Action of ΔNp63α in a p53 Wild-Type Background

scientific article published on 05 November 2019

TRIM8 anti-proliferative action against chemo-resistant renal cell carcinoma.

artículo científico publicado en 2014

TRIM8 modulates p53 activity to dictate cell cycle arrest.

artículo científico publicado en 2012

TRIM8 restores p53 tumour suppressor function by blunting N-MYC activity in chemo-resistant tumours.

artículo científico publicado en 2017

Targeted next-generation sequencing detects novel gene-phenotype associations and expands the mutational spectrum in cardiomyopathies

artículo científico publicado en 2017

Targeting Chemoresistant Tumors: Could TRIM Proteins-p53 Axis Be a Possible Answer? ⬇️

artículo científico publicado en 2019

The BioVel Project: Robust phylogenetic workflows running on the GRID

scholarly article by Saverio Vicario et al published 9 November 2012 in EMBnet.Journal

The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health

artículo científico publicado en 2020

The estimation of relative site variability among aligned homologous protein sequences

artículo científico publicado en 2003

The future of food and nutrition in ELIXIR

artículo científico publicado en 2022

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

artículo científico publicado en 2007

The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy

article

The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern

artículo científico publicado en 1991

The members of the RH gene family (RH50 and RH30) followed different evolutionary pathways

artículo científico publicado en 1999

The metagenomic data life-cycle: standards and best practices.

artículo científico publicado en 2017

The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level

artículo científico publicado en 2007

The neglected genome

artículo científico publicado en 2012

The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates

artículo científico publicado en 2007

The transcriptional landscape of the mammalian genome

artículo científico publicado en 2005

Time and biosequences: a contribution to the origin of modern man

Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity

artículo científico publicado en 2014

Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)

article published in 2015

Transcript mapping and genome annotation of ascidian mtDNA using EST data

artículo científico publicado en 2003

Transcriptional Analysis of Acinetobacter sp. neg1 Capable of Degrading Ochratoxin A.

artículo científico publicado en 2016

Transcriptome Assembly and Alternative Splicing Analysis

Translational control of Scamper expression via a cell-specific internal ribosome entry site

artículo científico publicado en 2003

UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions

artículo científico publicado en 2022

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

artículo científico publicado en 2010

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

artículo científico publicado en 2005

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

artículo científico publicado en 2002

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.

artículo científico publicado en 1999

UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs

artículo científico publicado en 1998

Unbiased Taxonomic Annotation of Metagenomic Samples

Unbiased Taxonomic Annotation of Metagenomic Samples.

artículo científico publicado en 2017

Uncovering RNA Editing Sites in Long Non-Coding RNAs.

artículo científico publicado en 2014

Untranslated regions of mRNAs

artículo científico publicado en 2002

Using REDItools to Detect RNA Editing Events in NGS Datasets.

artículo científico publicado en 2015

Using Weeder for the discovery of conserved transcription factor binding sites

artículo científico publicado en 2006

Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences.

artículo científico publicado en 2014

Using community events to increase quality and adoption of standards: the case of Bioschemas

VDR primary targets by genome-wide transcriptional profiling

artículo científico publicado en 2014

VINYL: Variant prIoritizatioN by survivaL analysis

artículo científico publicado en 2020

WEP: a high-performance analysis pipeline for whole-exome data

artículo científico publicado en 2013

WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments

artículo científico publicado en 2004

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

artículo científico publicado en 2004

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

artículo científico publicado en 2007

What is a gene? An updated operational definition

article

Whole transcriptome profiling of Late-Onset Alzheimer's Disease patients provides insights into the molecular changes involved in the disease.

artículo científico publicado en 2018

YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation

scientific article published on 02 December 2020

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data

artículo científico publicado en 2007

uAUG and uORFs in human and rodent 5'untranslated mRNAs

artículo científico publicado en 2005

The era of reference genomes in conservation genomics

artículo científico publicado en 2022

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