Lista de obras - Damian Szklarczyk - Dominio Público Uruguay

"Orphan" retrogenes in the human genome

artículo científico publicado en 2012

Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling.

artículo científico publicado en 2019

Analysis of the human kinome and phosphatome reveals diseased signaling networks induced by overexpression

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

artículo científico

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

article

GUNC: detection of chimerism and contamination in prokaryotic genomes

artículo científico publicado en 2021

Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

artículo científico publicado en 2012

Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network

scientific article published on 02 September 2020

Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington

artículo científico publicado en 2011

Protein-Protein Interaction Databases

artículo científico publicado en 2015

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

artículo científico publicado en 2012

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

artículo científico publicado en 2013

STITCH 2: an interaction network database for small molecules and proteins

artículo científico publicado en 2010

STITCH 4: integration of protein-chemical interactions with user data

artículo científico publicado en 2013

STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

artículo científico publicado en 2015

STRING v10: protein-protein interaction networks, integrated over the tree of life

artículo científico publicado en 2015

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

artículo científico publicado en 2018

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

artículo científico publicado en 2013

Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing

artículo científico publicado en 2011

Standardized benchmarking in the quest for orthologs

artículo científico publicado en 2016

Ten Years of Collaborative Progress in the Quest for Orthologs

artículo científico publicado en 2021

The Quest for Orthologs benchmark service and consensus calls in 2020

scientific article published on 06 May 2020

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

artículo científico publicado en 2011

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

artículo científico publicado en 2016

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

scientific article published on 25 November 2020

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

scientific article published on 06 May 2019

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.

artículo científico publicado en 2015

Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

scholarly article by Helen Victoria Cook published in September 2018

WeGET: predicting new genes for molecular systems by weighted co-expression.

artículo científico publicado en 2015

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

artículo científico publicado en 2015

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

artículo científico publicado en 2019

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

artículo científico publicado en 2012

eggNOG v4.0: nested orthology inference across 3686 organisms

artículo científico publicado en 2013

Lista de obras de Damian Szklarczyk

"Orphan" retrogenes in the human genome

Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling.

Analysis of the human kinome and phosphatome reveals diseased signaling networks induced by overexpression

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

GUNC: detection of chimerism and contamination in prokaryotic genomes

Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network

Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington

Protein-Protein Interaction Databases

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

STITCH 2: an interaction network database for small molecules and proteins

STITCH 4: integration of protein-chemical interactions with user data

STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

STRING v10: protein-protein interaction networks, integrated over the tree of life

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing

Standardized benchmarking in the quest for orthologs

Ten Years of Collaborative Progress in the Quest for Orthologs

The Quest for Orthologs benchmark service and consensus calls in 2020

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.

Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

WeGET: predicting new genes for molecular systems by weighted co-expression.

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

eggNOG v4.0: nested orthology inference across 3686 organisms