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Lista de obras de Erich Bornberg-Bauer

A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila

scientific article published on 07 April 2020

A Roadmap to Domain Based Proteomics

artículo científico publicado en 2019

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network

artículo científico publicado en 2007

A putative transcription factor inducing mobility in Mycoplasma pneumoniae

article

A structural model of latent evolutionary potentials underlying neutral networks in proteins

artículo científico publicado en 2007

Ant behaviour and brain gene expression of defending hosts depend on the ecological success of the intruding social parasite

scientific article published on 01 April 2019

Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.

artículo científico publicado en 1999

Arrangements in the modular evolution of proteins.

artículo científico publicado en 2008

Author Correction: Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

artículo científico publicado en 2020

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).

artículo científico publicado en 2007

Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life

artículo científico publicado en 2011

Becoming a de novo gene

scientific article published on 01 April 2019

BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks

artículo científico publicado en 2002

CADRE: the Central Aspergillus Data REpository

artículo científico publicado en 2004

Chapter 6. Comparative genomic approaches to investigate molecular traits specific to social insects

artículo científico publicado en 2016

Comparative analyses of caste, sex, and developmental stage-specific transcriptomes in two Temnothorax ants

artículo científico publicado en 2020

Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress.

artículo científico publicado en 2008

Comparative analysis of lincRNA in insect species

artículo científico publicado en 2017

Comparative transcriptomics of stickleback immune gene responses upon infection by two helminth parasites, Diplostomum pseudospathaceum and Schistocephalus solidus.

artículo científico publicado en 2016

Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: robustness of the superfunnel paradigm.

artículo científico publicado en 2004

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

artículo científico publicado en 2011

Computational approaches to identify leucine zippers

artículo científico publicado en 1998

Conceptual data modelling for bioinformatics

artículo científico publicado en 2002

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

artículo científico publicado en 2004

Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation

artículo científico publicado en 2015

DOGMA: a web server for proteome and transcriptome quality assessment

scientific article published on 01 July 2019

DOGMA: domain-based transcriptome and proteome quality assessment.

artículo científico publicado en 2016

De Novo Genes are "Frozen Accidents" which Escaped Rapid Turnover of Pervasively Transcribed ORFs

article

Detection of orphan domains in Drosophila using "hydrophobic cluster analysis".

artículo científico publicado en 2015

Distribution of gibberellin biosynthetic genes and gibberellin production in the Gibberella fujikuroi species complex

artículo científico publicado en 2005

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins

artículo científico publicado en 2013

Domain deletions and substitutions in the modular protein evolution

scientific article published in 2006

Domain similarity based orthology detection

artículo científico publicado en 2015

Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs

artículo científico publicado en 2009

Dynamics and adaptive benefits of modular protein evolution.

artículo científico publicado en 2013

Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution

artículo científico publicado en 2012

Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'.

artículo científico publicado en 2015

Enzyme sub-functionalization driven by regulation

artículo científico publicado en 2017

Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness

artículo científico publicado en 2012

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach

artículo científico publicado en 2012

Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins

artículo científico publicado en 2006

Evolution AfterandBefore Gene Duplication?

article

Evolution of Circular Permutations in Multidomain Proteins

artículo científico publicado en 2006

Evolution of Protein Domain Repeats in Metazoa

artículo científico publicado en 2016

Evolution of novel genes in three-spined stickleback populations

scientific article published on 04 June 2020

Evolutionary Potential of Cis-Regulatory Mutations to Cause Rapid Changes in Transcription Factor Binding

artículo científico publicado en 2019

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes

artículo científico publicado en 2011

Evolutionary dynamics of simple sequence repeats across long evolutionary time scale in genus Drosophila

Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts

artículo científico publicado en 2012

Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model

artículo científico publicado en 2010

Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest

article

Exploring the fitness landscapes of lattice proteins.

artículo científico publicado en 1997

Extensive copy-number variation of young genes across stickleback populations

artículo científico publicado en 2014

Fact or fiction: updates on how protein-coding genes might emerge de novo from previously non-coding DNA.

artículo científico publicado en 2017

Finding common protein interaction patterns across organisms.

artículo científico publicado en 2006

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

artículo científico publicado en 2010

Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens

scientific article published on 01 June 2021

Gene content evolution in the arthropods

scientific article published on 23 January 2020

Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes

scientific article published on 01 August 2019

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

artículo científico publicado en 2012

Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types

artículo científico publicado en 2014

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

artículo científico publicado en 2012

Genomic divergence between nine- and three-spined sticklebacks

artículo científico publicado en 2013

Genomics of divergence along a continuum of parapatric population differentiation

artículo científico publicado en 2015

Hemimetabolous genomes reveal molecular basis of termite eusociality

artículo científico publicado en 2018

High-Throughput, Lysis-Free Screening for Sulfatase Activity Using Escherichia coli Autodisplay in Microdroplets

scientific article published on 04 December 2019

High-throughput Selection of Human <i>de novo</i>-emerged sORFs with High Folding Potential

artículo científico publicado en 2024

Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

scientific article published on 21 October 2019

Higher-order epistatic networks underlie the evolutionary fitness landscape of a xenobiotic- degrading enzyme: Supplementary information

Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

artículo científico publicado en 2015

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites

artículo científico publicado en 2015

How are model protein structures distributed in sequence space? ⬇️

artículo científico publicado el 1 de noviembre de 1997

How do new proteins arise?

artículo científico publicado en 2010

Hybrid Genome Assembly of a Neotropical Mutualistic Ant

artículo científico publicado en 2019

Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness.

artículo científico publicado en 2012

Immunity comes first: the effect of parasite genotypes on adaptive immunity and immunization in three-spined sticklebacks.

artículo científico publicado en 2015

Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover

article

Infection routes matter in population-specific responses of the red flour beetle to the entomopathogen Bacillus thuringiensis

artículo científico publicado en 2014

Just how versatile are domains?

artículo científico publicado en 2008

MDAT- Aligning multiple domain arrangements

artículo científico publicado en 2015

Mechanisms and dynamics of orphan gene emergence in insect genomes

artículo científico publicado en 2013

Mechanisms of transcription factor evolution in Metazoa

artículo científico publicado en 2016

Metabolism of halophilic archaea

artículo científico publicado en 2008

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

artículo científico publicado en 1999

Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants

artículo científico publicado en 2010

Molecular traces of alternative social organization in a termite genome.

artículo científico publicado en 2014

One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity

artículo científico publicado en 2006

Origins and structural properties of novel and de novo protein domains during insect evolution

scholarly article by Steffen Klasberg published in June 2018

Perspectives on protein evolution from simple exact models.

artículo científico publicado en 2002

Phylogenetic profiling of protein interaction networks in eukaryotic transcription factors reveals focal proteins being ancestral to hubs

artículo científico publicado en 2005

Phylogeographic differentiation versus transcriptomic adaptation to warm temperatures in Zostera marina, a globally important seagrass

artículo científico publicado en 2016

Protein Domains as Evolutionary Units

Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus

artículo científico publicado en 2014

Proteome of Hydra nematocyst

artículo científico publicado en 2012

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree

artículo científico publicado en 2013

RNA folding and combinatory landscapes

artículo científico publicado en 1993

Random structures and evolution of biopolymers: A computational case study on RNA secondary structures

Rapid motif-based prediction of circular permutations in multi-domain proteins

artículo científico publicado en 2005

Rapid similarity search of proteins using alignments of domain arrangements

artículo científico publicado en 2013

Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

artículo científico publicado en 2002

Reconstructed evolution of insulin receptors in insects reveals duplications in early insects and cockroaches

scholarly article by Lukas Pm Kremer et al published July 2018 in Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution

Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network

artículo científico publicado en 2006

Remodeling of the juvenile hormone pathway through caste-biased gene expression and positive selection along a gradient of termite eusociality

article

Robustness by intrinsically disordered C-termini and translational readthrough

artículo científico publicado en 2018

Robustness versus evolvability: a paradigm revisited

artículo científico publicado en 2010

Signals: tinkering with domains

artículo científico publicado en 2010

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

artículo científico publicado en 2013

Specific gene expression responses to parasite genotypes reveal redundancy of innate immunity in vertebrates.

artículo científico publicado en 2014

Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans

scientific article published on 11 February 2008

Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester

artículo científico publicado en 2018

Structure formation of biopolymers is complex, their evolution may be simple ⬇️

artículo científico publicado el 1 de enero de 1996

Switching from simple to complex oscillations in calcium signaling

artículo científico publicado en 2000

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

artículo científico publicado en 2007

The Crohn's disease susceptibility gene DLG5 as a member of the CARD interaction network

artículo científico publicado en 2008

The Genomic Basis of Arthropod Diversity

article published in 2018

The Goddard and Saturn Genes Are Essential for Drosophila Male Fertility and May Have Arisen De Novo

artículo científico publicado en 2017

The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa

artículo científico publicado en 2015

The dynamics and evolutionary potential of domain loss and emergence

artículo científico publicado en 2011

The evolution of domain arrangements in proteins and interaction networks

artículo científico publicado en 2005

The evolution of protein interaction networks

artículo científico publicado en 2011

The evolution of protein interaction networks in regulatory proteins.

artículo científico publicado en 2004

The first cockroach genome and its significance for understanding development and the evolution of insect eusociality

article

The genome of Eucalyptus grandis

artículo científico publicado en 2014

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

artículo científico publicado en 2016

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

artículo científico publicado en 2011

The genomes of two key bumblebee species with primitive eusocial organization ⬇️

artículo científico publicado en 2015

The interface of protein structure, protein biophysics, and molecular evolution

artículo científico publicado en 2012

The look-ahead effect of phenotypic mutations

artículo científico publicado en 2008

The sieve element occlusion gene family in dicotyledonous plants.

artículo científico publicado en 2011

Transcriptional networking

artículo científico publicado en 2005

Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks

artículo científico publicado en 2016

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

artículo científico publicado en 2011

TreeWiz: interactive exploration of huge trees

artículo científico publicado en 2002

Tribolium castaneum gene expression changes after Paranosema whitei infection

artículo científico publicado en 2018

WWW access to the SYSTERS protein sequence cluster set

artículo científico publicado en 1999

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