Lista de obras - Johannes Griss - Dominio Público Uruguay

2016 update of the PRIDE database and its related tools

artículo científico publicado en 2016

2016 update of the PRIDE database and its related tools.

scientific article published on 28 September 2016

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

publication published on 13 May 2022

A clinical trial of a whole-virus H5N1 vaccine derived from cell culture.

artículo científico publicado en 2008

A posteriori quality control for the curation and reuse of public proteomics data

artículo científico publicado en 2011

A proteomics sample metadata representation for multiomics integration and big data analysis

artículo científico publicado en 2021

A rare bullous variant of dermatitis herpetiformis

artículo científico publicado en 2015

Analysis of the tryptic search space in UniProt databases.

artículo científico publicado en 2014

Autoantibody Levels and Clinical Disease Severity in Patients with Pemphigus: Comparison of Aggregated Anti-desmoglein ELISA Values and Indirect Immunofluorescence Titres

artículo científico publicado en 2015

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma

artículo científico publicado en 2019

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma: Supplementary Figures and Methods

BioContainers: An open-source and community-driven framework for software standardization

artículo científico publicado en 2017

Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts

artículo científico publicado en 2016

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

artículo científico

Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.

artículo científico

Cytoplasmic proteome and secretome profiles of differently stimulated human dendritic cells

artículo científico publicado en 2009

Digital image analysis improves precision of programmed death ligand 1 (PD-L1) scoring in cutaneous melanoma

artículo científico publicado en 2018

Expanding the use of spectral libraries in proteomics

Functional classification of cellular proteome profiles support the identification of drug resistance signatures in melanoma cells.

artículo científico publicado en 2013

Future Prospects of Spectral Clustering Approaches in Proteomics

scholarly article by Yasset Perez-Riverol published in July 2018

GPDE: A biological proteomic database for biomarker discovery and evaluation

scholarly article by Johannes Griss et al published 27 January 2011 in Proteomics

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

artículo científico publicado en 2016

Identifying novel biomarkers through data mining-a realistic scenario?

artículo científico publicado en 2015

Introducing a new parameter for quality control of proteome profiles: consideration of commonly expressed proteins

artículo científico publicado en 2009

Introducing the CPL/MUW proteome database: interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells

artículo científico publicado en 2009

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

artículo científico publicado en 2019

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Molecular Classification of Tumor Cells in a Patient with Intravascular Large B-Cell Lymphoma.

artículo científico publicado en 2017

Orally administered rapamycin, dacarbazine or both for treatment of human melanoma evaluated in severe combined immunodeficiency mice

artículo científico publicado en 2008

PRIDE Cluster: building a consensus of proteomics data

artículo científico publicado en 2013

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

artículo científico publicado en 2015

PRIDE Inspector: a tool to visualize and validate MS proteomics data

artículo científico publicado en 2012

Proteome signatures of inflammatory activated primary human peripheral blood mononuclear cells

artículo científico publicado en 2012

Published and perished? The influence of the searched protein database on the long-term storage of proteomics data

artículo científico publicado en 2011

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis

scientific article published on 09 September 2020

ReactomeGSA: new features to simplify public data reuse

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

artículo científico publicado en 2016

Response to “Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra”

scholarly article by Johannes Griss et al published 23 April 2018 in Journal of Proteome Research

STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer

artículo científico publicado en 2020

Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization

scientific article published on 02 July 2019

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins

artículo científico publicado en 2019

Spectral library searching in proteomics

artículo científico publicado en 2015

The PRIDE database and related tools and resources in 2019: improving support for quantification data

artículo científico publicado en 2019

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

artículo científico publicado en 2012

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

artículo científico publicado en 2013

The mzIdentML data standard for mass spectrometry-based proteomics results

artículo científico publicado en 2012

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

artículo científico publicado en 2014

The reactome pathway knowledgebase 2022

scientific article published on 14 October 2021

Tumor-associated B cells in cutaneous primary melanoma and improved clinical outcome

artículo científico

Tumor-associated B-cells induce tumor heterogeneity and therapy resistance

artículo científico publicado en 2017

jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats

artículo científico publicado en 2012

jmzTab: a java interface to the mzTab data standard

artículo científico publicado en 2014

Lista de obras de Johannes Griss

2016 update of the PRIDE database and its related tools

2016 update of the PRIDE database and its related tools.

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

A clinical trial of a whole-virus H5N1 vaccine derived from cell culture.

A posteriori quality control for the curation and reuse of public proteomics data

A proteomics sample metadata representation for multiomics integration and big data analysis

A rare bullous variant of dermatitis herpetiformis

Analysis of the tryptic search space in UniProt databases.

Autoantibody Levels and Clinical Disease Severity in Patients with Pemphigus: Comparison of Aggregated Anti-desmoglein ELISA Values and Indirect Immunofluorescence Titres

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma: Supplementary Figures and Methods

BioContainers: An open-source and community-driven framework for software standardization

Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.

Cytoplasmic proteome and secretome profiles of differently stimulated human dendritic cells

Digital image analysis improves precision of programmed death ligand 1 (PD-L1) scoring in cutaneous melanoma

Expanding the use of spectral libraries in proteomics

Functional classification of cellular proteome profiles support the identification of drug resistance signatures in melanoma cells.

Future Prospects of Spectral Clustering Approaches in Proteomics

GPDE: A biological proteomic database for biomarker discovery and evaluation

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

Identifying novel biomarkers through data mining-a realistic scenario?

Introducing a new parameter for quality control of proteome profiles: consideration of commonly expressed proteins

Introducing the CPL/MUW proteome database: interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Molecular Classification of Tumor Cells in a Patient with Intravascular Large B-Cell Lymphoma.

Orally administered rapamycin, dacarbazine or both for treatment of human melanoma evaluated in severe combined immunodeficiency mice

PRIDE Cluster: building a consensus of proteomics data

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

PRIDE Inspector: a tool to visualize and validate MS proteomics data

Proteome signatures of inflammatory activated primary human peripheral blood mononuclear cells

Published and perished? The influence of the searched protein database on the long-term storage of proteomics data

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis

ReactomeGSA: new features to simplify public data reuse

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

Response to “Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra”

STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer

Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins

Spectral library searching in proteomics

The PRIDE database and related tools and resources in 2019: improving support for quantification data

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

The mzIdentML data standard for mass spectrometry-based proteomics results

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

The reactome pathway knowledgebase 2022

Tumor-associated B cells in cutaneous primary melanoma and improved clinical outcome

Tumor-associated B-cells induce tumor heterogeneity and therapy resistance

jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats

jmzTab: a java interface to the mzTab data standard