Lista de obras - Guy Baele - Dominio Público Uruguay

A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution

artículo científico publicado en 2016

A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.

artículo científico publicado en 2008

A screening methodology based on Random Forests to improve the detection of gene-gene interactions

artículo científico publicado en 2010

Accounting for population structure reveals ambiguity in the Zaire Ebolavirus reservoir dynamics

artículo científico publicado en 2020

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

artículo científico publicado en 2012

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

artículo científico publicado en 2017

Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

artículo científico publicado en 2019

Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil

artículo científico publicado en 2014

An improved statistical method for detecting heterotachy in nucleotide sequences

artículo científico publicado en 2006

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

artículo científico publicado en 2014

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

scientific article published on 01 November 2019

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

artículo científico publicado en 2019

Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1.

artículo científico publicado en 2015

Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation

artículo científico publicado en 2016

Bayesian estimation of past population dynamics in BEAST 1.10 using the Skygrid coalescent model

artículo científico publicado en 2019

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency

artículo científico publicado en 2013

Bayesian inference of evolutionary histories under time-dependent substitution rates

artículo científico publicado en 2019

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

artículo científico publicado en 2018

Context-Dependent Evolutionary Models for Non-Coding Sequences: An Overview of Several Decades of Research and an Analysis of Laurasiatheria and Primate Evolution

article by Guy Baele published 9 October 2011 in Evolutionary Biology

Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes

artículo científico publicado en 2011

Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution

artículo científico publicado en 2015

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

scientific article published on 06 December 2019

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

artículo científico publicado en 2016

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

artículo científico publicado en 2009

Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions

artículo científico publicado en 2021

Emerging Concepts of Data Integration in Pathogen Phylodynamics ⬇️

artículo científico publicado en 2017

Evolutionary history and introduction of SARS-CoV-2 Alpha VOC/B.1.1.7 in Pakistan through international travelers

artículo científico publicado en 2022

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty

artículo científico publicado en 2015

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

artículo científico publicado en 2022

Genomic and epidemiological monitoring of yellow fever virus transmission potential

artículo científico publicado en 2018

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

artículo científico publicado en 2021

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

artículo científico publicado en 2014

High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE

scientific article published on 01 January 2019

Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus

artículo científico publicado en 2017

Host ecology determines the dispersal patterns of a plant virus

artículo científico publicado en 2015

Hunting alters viral transmission and evolution in a large carnivore

scientific article published on 27 January 2022

Identifying predictors of time-inhomogeneous viral evolutionary processes

scientific article published on July 2016

Identifying the patterns and drivers of enzootic dynamics using reservoir sampling

artículo científico publicado en 2019

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography

artículo científico publicado en 2014

International travelers and genomics uncover a ‘hidden’ Zika outbreak

artículo científico publicado en 2018

Interpretation of urinary concentrations of pseudoephedrine and its metabolite cathine in relation to doping control

artículo científico publicado en 2009

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution

artículo científico publicado en 2013

Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

artículo científico publicado en 2010

On Adaptive Self-Organization in Artificial Robot Organisms

On the Use of Phylogeographic Inference to Infer the Dispersal History of Rabies Virus: A Review Study

artículo científico publicado en 2021

Open-ended on-board Evolutionary Robotics for robot swarms

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

artículo científico publicado en 2017

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

artículo científico publicado en 2018

Phylogenetic Factor Analysis

artículo científico publicado en 2017

Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing

artículo científico publicado en 2016

Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study

artículo científico publicado en 2022

Recent advances in computational phylodynamics

artículo científico publicado en 2018

Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1

artículo científico publicado en 2022

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

artículo científico publicado en 2020

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk

scientific article published on 06 January 2021

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

artículo científico publicado en 2016

Stability of selected chlorinated thiazide diuretics

artículo científico publicado en 2008

Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations

artículo científico publicado en 2015

The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia

artículo científico publicado en 2017

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

artículo científico publicado en 2014

The genome of Tetranychus urticae reveals herbivorous pest adaptations

artículo científico publicado en 2011

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic

scholarly article by Nathan D. Grubaugh et al published 22 August 2019 in Cell

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

artículo científico publicado en 2014

Untangling introductions and persistence in COVID-19 resurgence in Europe

artículo científico

Using non-reversible context-dependent evolutionary models to study substitution patterns in primate non-coding sequences

artículo científico publicado en 2010

Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages - Application to rabies virus spread in Iran

artículo científico publicado en 2019

Virus genomes reveal factors that spread and sustained the Ebola epidemic

artículo científico publicado en 2017

nosoi: A stochastic agent-based transmission chain simulation framework in r

scientific article published on 21 June 2020

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios

artículo científico publicado en 2014

Lista de obras de Guy Baele

A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution

A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.

A screening methodology based on Random Forests to improve the detection of gene-gene interactions

Accounting for population structure reveals ambiguity in the Zaire Ebolavirus reservoir dynamics

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil

An improved statistical method for detecting heterotachy in nucleotide sequences

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1.

Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation

Bayesian estimation of past population dynamics in BEAST 1.10 using the Skygrid coalescent model

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency

Bayesian inference of evolutionary histories under time-dependent substitution rates

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

Context-Dependent Evolutionary Models for Non-Coding Sequences: An Overview of Several Decades of Research and an Analysis of Laurasiatheria and Primate Evolution

Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes

Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions

Emerging Concepts of Data Integration in Pathogen Phylodynamics ⬇️

Evolutionary history and introduction of SARS-CoV-2 Alpha VOC/B.1.1.7 in Pakistan through international travelers

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

Genomic and epidemiological monitoring of yellow fever virus transmission potential

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE

Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus

Host ecology determines the dispersal patterns of a plant virus

Hunting alters viral transmission and evolution in a large carnivore

Identifying predictors of time-inhomogeneous viral evolutionary processes

Identifying the patterns and drivers of enzootic dynamics using reservoir sampling

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography

International travelers and genomics uncover a ‘hidden’ Zika outbreak

Interpretation of urinary concentrations of pseudoephedrine and its metabolite cathine in relation to doping control

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution

Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

On Adaptive Self-Organization in Artificial Robot Organisms

On the Use of Phylogeographic Inference to Infer the Dispersal History of Rabies Virus: A Review Study

Open-ended on-board Evolutionary Robotics for robot swarms

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Phylogenetic Factor Analysis

Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing

Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study

Recent advances in computational phylodynamics

Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

Stability of selected chlorinated thiazide diuretics

Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations

The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

The genome of Tetranychus urticae reveals herbivorous pest adaptations

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

Untangling introductions and persistence in COVID-19 resurgence in Europe

Using non-reversible context-dependent evolutionary models to study substitution patterns in primate non-coding sequences

Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages - Application to rabies virus spread in Iran

Virus genomes reveal factors that spread and sustained the Ebola epidemic

nosoi: A stochastic agent-based transmission chain simulation framework in r

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios