Lista de obras - Octávio S. Paulo - Dominio Público Uruguay

4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.

artículo científico publicado en 2016

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

artículo científico publicado en 2014

Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

article

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts.

artículo científico publicado en 2011

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

artículo científico publicado en 2013

Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

artículo científico publicado en 2016

Association of Mc1r variants with ecologically relevant phenotypes in the European ocellated lizard, Lacerta lepida ⬇️

artículo científico publicado el 4 de agosto de 2011

Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research

artículo científico publicado en 2020

Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan ⬇️

artículo científico publicado el 15 de agosto de 2012

Comparative Validation of Conventional and RNA-Seq Data-Derived Reference Genes for qPCR Expression Studies of Colletotrichum kahawae

artículo científico publicado en 2016

Conflicting patterns of DNA barcoding and taxonomy in the cicada genus Tettigettalna from Southern Europe (Hemiptera: Cicadidae).

artículo científico publicado en 2013

Conus pennaceus: a phylogenetic analysis of the Mozambican molluscan complex

scholarly article by C M Pereira et al published 27 December 2010 in African Journal of Marine Science

Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification

artículo científico publicado en 2016

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

artículo científico publicado en 2016

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

article

Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats.

artículo científico publicado en 2016

Genetic and Genomic Tools to Asssist Sugar Beet Improvement: The Value of the Crop Wild Relatives.

artículo científico publicado en 2018

Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area

artículo científico publicado en 2016

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness

scientific article published on 19 June 2019

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

artículo científico publicado en 2015

Genomic signatures of introgression between commercial and native bumblebees, , in western Iberian Peninsula-Implications for conservation and trade regulation ⬇️

scientific article published on 11 January 2019

Habitat filtering and inferred dispersal ability condition across‐scale species turnover and rarity in Macaronesian island spider assemblages

artículo científico publicado en 2021

Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data

artículo científico publicado en 2020

Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

artículo científico publicado en 2012

Management strategies for conservation of the lizard Lacerta schreiberi in Portugal

artículo científico publicado en 1999

Molecular candidates for early-stage flower-to-fruit transition in stenospermocarpic table grape (Vitis vinifera L.) inflorescences ascribed by differential transcriptome and metabolome profiles

artículo científico publicado en 2016

Molecular evidence of polyandry in the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae).

artículo científico publicado en 2013

Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species

artículo científico publicado en 2010

Morphology, songs and genetics identify two new cicada species from Morocco: Tettigettalna afroamissa sp. nov. and Berberigetta dimelodica gen. nov. & sp. nov. (Hemiptera: Cicadettini)

artículo científico publicado en 2017

Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient ⬇️

artículo científico publicado el 22 de noviembre de 2010

NOTE: DISTRIBUTION AND CONSERVATION OF THE COMMON CHAMAELEO CHAMAELEON, IN ALGARVE, SOUTHERN PORTUGAL ⬇️

article

New data on polymorphism of the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) from the island of São Miguel (Azores)

artículo científico publicado en 2018

New insights on adaptation and population structure of cork oak using genotyping by sequencing

artículo científico publicado en 2018

New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

artículo científico publicado en 2014

Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica

artículo científico publicado en 2018

Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone

artículo científico publicado en 2012

Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling

artículo científico publicado en 2014

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

artículo científico publicado en 2014

Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)

artículo científico publicado en 2023

PCR-based detection of prey DNA in the gut contents of the tiger-fly, Coenosia attenuata (Diptera: Muscidae), a biological control agent in Mediterranean greenhouses

artículo científico publicado en 2021

Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): Defining modern subfamilies and tribes

artículo científico publicado en 2016

Phylogeographical patterns inCoenosia attenuata(Diptera: Muscidae): a widespread predator of insect species associated with greenhouse crops

Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

artículo científico publicado en 2011

Phylogeography and modes of reproduction in diploid and tetraploid halophytes of Limonium species (Plumbaginaceae): evidence for a pattern of geographical parthenogenesis.

artículo científico publicado en 2015

Population genomic footprints of host adaptation, introgression and recombination in Coffee Leaf Rust

artículo científico publicado en 2018

Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae) ⬇️

artículo científico

Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L.

artículo científico publicado en 2016

Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity

artículo científico publicado en 2019

Structure_threader: an Improved Method for Automation Parallelization of Programs STRUCTURE, FASTSTRUCTURE and MavericK on Multi Core CPU systems

artículo científico

Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA.

artículo científico publicado en 2008

Testing drivers of acoustic divergence in cicadas (Cicadidae: <i>Tettigettalna</i>)

artículo científico publicado en 2022

Tettigettalnajosei (Boulard, 1982) (Hemiptera: Cicadoidea): first record in Spain, with notes on the distribution, genetic variation and behaviour of the species

artículo científico publicado en 2014

The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard.

artículo científico publicado en 2001

The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean

article

Using gradient Forest to predict climate response and adaptation in Cork oak

artículo científico publicado en 2021

Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian Lizard

article

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust

artículo científico publicado en 2011

concatenator: sequence data matrices handling made easy.

artículo científico publicado en 2008

p53 gene discriminates two ecologically divergent sister species of pine voles

artículo científico publicado en 2015

The era of reference genomes in conservation genomics

artículo científico publicado en 2022

Lista de obras de Octávio S. Paulo

4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

Association of Mc1r variants with ecologically relevant phenotypes in the European ocellated lizard, Lacerta lepida ⬇️

Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research

Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan ⬇️

Comparative Validation of Conventional and RNA-Seq Data-Derived Reference Genes for qPCR Expression Studies of Colletotrichum kahawae

Conflicting patterns of DNA barcoding and taxonomy in the cicada genus Tettigettalna from Southern Europe (Hemiptera: Cicadidae).

Conus pennaceus: a phylogenetic analysis of the Mozambican molluscan complex

Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats.

Genetic and Genomic Tools to Asssist Sugar Beet Improvement: The Value of the Crop Wild Relatives.

Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

Genomic signatures of introgression between commercial and native bumblebees, , in western Iberian Peninsula-Implications for conservation and trade regulation ⬇️

Habitat filtering and inferred dispersal ability condition across‐scale species turnover and rarity in Macaronesian island spider assemblages

Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data

Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

Management strategies for conservation of the lizard Lacerta schreiberi in Portugal

Molecular candidates for early-stage flower-to-fruit transition in stenospermocarpic table grape (Vitis vinifera L.) inflorescences ascribed by differential transcriptome and metabolome profiles

Molecular evidence of polyandry in the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae).

Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species

Morphology, songs and genetics identify two new cicada species from Morocco: Tettigettalna afroamissa sp. nov. and Berberigetta dimelodica gen. nov. & sp. nov. (Hemiptera: Cicadettini)

Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient ⬇️

NOTE: DISTRIBUTION AND CONSERVATION OF THE COMMON CHAMAELEO CHAMAELEON, IN ALGARVE, SOUTHERN PORTUGAL ⬇️

New data on polymorphism of the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) from the island of São Miguel (Azores)

New insights on adaptation and population structure of cork oak using genotyping by sequencing

New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica

Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone

Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)

PCR-based detection of prey DNA in the gut contents of the tiger-fly, Coenosia attenuata (Diptera: Muscidae), a biological control agent in Mediterranean greenhouses

Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): Defining modern subfamilies and tribes

Phylogeographical patterns inCoenosia attenuata(Diptera: Muscidae): a widespread predator of insect species associated with greenhouse crops

Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

Phylogeography and modes of reproduction in diploid and tetraploid halophytes of Limonium species (Plumbaginaceae): evidence for a pattern of geographical parthenogenesis.

Population genomic footprints of host adaptation, introgression and recombination in Coffee Leaf Rust

Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae) ⬇️

Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L.

Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity

Structure_threader: an Improved Method for Automation Parallelization of Programs STRUCTURE, FASTSTRUCTURE and MavericK on Multi Core CPU systems

Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA.

Testing drivers of acoustic divergence in cicadas (Cicadidae: <i>Tettigettalna</i>)

Tettigettalnajosei (Boulard, 1982) (Hemiptera: Cicadoidea): first record in Spain, with notes on the distribution, genetic variation and behaviour of the species

The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard.

The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean

Using gradient Forest to predict climate response and adaptation in Cork oak

Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian Lizard

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust

concatenator: sequence data matrices handling made easy.

p53 gene discriminates two ecologically divergent sister species of pine voles

The era of reference genomes in conservation genomics