Lista de obras - Ana Conesa - Dominio Público Uruguay

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

scientific article published on 27 February 2020

A multiway approach to data integration in systems biology based on Tucker3 and N-PLS

article

A network approach to elucidate and prioritize microbial dark matter in microbial communities

artículo científico publicado en 2020

A survey of best practices for RNA-seq data analysis

artículo científico publicado en 2016

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments

artículo científico publicado en 2011

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.

artículo científico publicado en 2007

B2G-FAR, a species-centered GO annotation repository

artículo científico publicado en 2011

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

artículo científico publicado en 2008

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

artículo científico publicado en 2010

Blast2GO: A comprehensive suite for functional analysis in plant genomics ⬇️

artículo científico publicado en 2008

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

artículo científico publicado en 2005

C-terminal propeptide of the Caldariomyces fumago chloroperoxidase: an intramolecular chaperone?

scholarly article by Ana Conesa published in August 2001

Calcium signaling in water stress-induced leaf abscission in citrus plants

article

Calnexin overexpression increases manganese peroxidase production in Aspergillus niger

artículo científico publicado en 2002

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.

artículo científico publicado en 2015

Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification

artículo científico publicado en 2014

Data integration in the era of omics: current and future challenges

artículo científico publicado en 2014

Defining the genomic signature of totipotency and pluripotency during early human development

artículo científico publicado en 2013

Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies

artículo científico publicado en 2005

Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.

artículo científico publicado en 2006

Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray

artículo científico publicado en 2012

Differential expression in RNA-seq: a matter of depth

artículo científico publicado en 2011

Direct functional assessment of the composite phenotype through multivariate projection strategies

artículo científico publicado en 2008

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

artículo científico publicado en 2007

Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1.

artículo científico publicado en 2012

Erratum to: Making sense of big data in health research: towards an EU action plan

artículo científico publicado en 2016

Examining the role of glutamic acid 183 in chloroperoxidase catalysis

artículo científico publicado en 2003

Expression of the Caldariomyces fumago chloroperoxidase in Aspergillus niger and characterization of the recombinant enzyme

artículo científico publicado en 2001

Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma

artículo científico publicado en 2012

Filamentous fungi as cell factories for heterologous protein production

artículo científico publicado en 2002

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri

artículo científico publicado en 2011

Functional assessment of time course microarray data

artículo científico publicado en 2009

Fungal peroxidases: molecular aspects and applications

artículo científico publicado en 2002

GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease

artículo científico publicado en 2022

GEPAS, a web-based tool for microarray data analysis and interpretation

artículo científico publicado en 2008

Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach

Harmonization of quality metrics and power calculation in multi-omic studies

scientific article published on 18 June 2020

High-throughput functional annotation and data mining with the Blast2GO suite

artículo científico publicado en 2008

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

artículo científico publicado en 2011

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

artículo científico publicado en 2010

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics

artículo científico publicado en 2012

Initial genomics of the human nucleolus

artículo científico publicado en 2010

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

artículo científico publicado en 2021

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology

artículo científico publicado en 2008

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells

artículo científico publicado en 2011

Making multi-omics data accessible to researchers

scientific article published on 31 October 2019

Making sense of big data in health research: Towards an EU action plan

artículo científico publicado en 2016

Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks

artículo científico publicado en 2009

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma

artículo científico publicado en 2015

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection

article

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua

artículo científico publicado en 2011

Modeling human endometrial decidualization from the interaction between proteome and secretome

artículo científico publicado en 2010

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

artículo científico publicado en 2021

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

artículo científico publicado en 2014

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

artículo científico publicado en 2010

Pathway network inference from gene expression data

artículo científico publicado en 2014

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

artículo científico publicado en 2011

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

artículo científico publicado en 2015

Qualimap: evaluating next-generation sequencing alignment data.

artículo científico publicado en 2012

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

artículo científico publicado en 2015

Relationship between genome and epigenome--challenges and requirements for future research

artículo científico publicado en 2014

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

artículo científico publicado en 2009

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

artículo científico publicado en 2014

STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline

artículo científico publicado en 2021

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

artículo científico

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

artículo científico publicado en 2010

Single-cell RNAseq for the study of isoforms-how is that possible?

artículo científico publicado en 2018

Spatial differentiation in the vegetative mycelium of Aspergillus niger

artículo científico publicado en 2007

Studies on the production of fungal peroxidases in Aspergillus niger

artículo científico publicado en 2000

The common ground of genomics and systems biology

artículo científico publicado en 2014

Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease

artículo científico publicado en 2020

Transcriptional profiling of mRNA expression in the mouse distal colon

artículo científico publicado en 2008

Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus

artículo científico publicado en 2007

Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole

scientific journal article

Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin

artículo científico publicado en 2012

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis

artículo científico publicado en 2012

Two independent epigenetic biomarkers predict survival in neuroblastoma

artículo científico publicado en 2015

Undisclosed, unmet and neglected challenges in multi-omics studies

artículo científico publicado en 2021

Variable selection for multifactorial genomic data

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

artículo científico publicado en 2022

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments

artículo científico publicado en 2006

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

artículo científico publicado en 2016

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

scientific article published on 18 May 2020

Lista de obras de Ana Conesa

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

A multiway approach to data integration in systems biology based on Tucker3 and N-PLS

A network approach to elucidate and prioritize microbial dark matter in microbial communities

A survey of best practices for RNA-seq data analysis

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.

B2G-FAR, a species-centered GO annotation repository

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

Blast2GO: A comprehensive suite for functional analysis in plant genomics ⬇️

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

C-terminal propeptide of the Caldariomyces fumago chloroperoxidase: an intramolecular chaperone?

Calcium signaling in water stress-induced leaf abscission in citrus plants

Calnexin overexpression increases manganese peroxidase production in Aspergillus niger

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.

Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification

Data integration in the era of omics: current and future challenges

Defining the genomic signature of totipotency and pluripotency during early human development

Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies

Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.

Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray

Differential expression in RNA-seq: a matter of depth

Direct functional assessment of the composite phenotype through multivariate projection strategies

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1.

Erratum to: Making sense of big data in health research: towards an EU action plan

Examining the role of glutamic acid 183 in chloroperoxidase catalysis

Expression of the Caldariomyces fumago chloroperoxidase in Aspergillus niger and characterization of the recombinant enzyme

Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma

Filamentous fungi as cell factories for heterologous protein production

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri

Functional assessment of time course microarray data

Fungal peroxidases: molecular aspects and applications

GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease

GEPAS, a web-based tool for microarray data analysis and interpretation

Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach

Harmonization of quality metrics and power calculation in multi-omic studies

High-throughput functional annotation and data mining with the Blast2GO suite

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics

Initial genomics of the human nucleolus

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells

Making multi-omics data accessible to researchers

Making sense of big data in health research: Towards an EU action plan

Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua

Modeling human endometrial decidualization from the interaction between proteome and secretome

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

Pathway network inference from gene expression data

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

Qualimap: evaluating next-generation sequencing alignment data.

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

Relationship between genome and epigenome--challenges and requirements for future research

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

Single-cell RNAseq for the study of isoforms-how is that possible?

Spatial differentiation in the vegetative mycelium of Aspergillus niger

Studies on the production of fungal peroxidases in Aspergillus niger

The common ground of genomics and systems biology

Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease

Transcriptional profiling of mRNA expression in the mouse distal colon

Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus

Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole

Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis

Two independent epigenetic biomarkers predict survival in neuroblastoma

Undisclosed, unmet and neglected challenges in multi-omics studies

Variable selection for multifactorial genomic data