Lista de obras - Hilmar Lapp - Dominio Público Uruguay

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

artículo científico publicado en 2012

A <scp>FAIR</scp> and modular image‐based workflow for knowledge discovery in the emerging field of imageomics

artículo científico publicado en 2024

A Logical Model of Homology for Comparative Biology

artículo científico publicado en 2020

A gene atlas of the mouse and human protein-encoding transcriptomes

artículo científico publicado en 2004

A logical model of homology for comparative biology

artículo científico publicado en 2019

A unified anatomy ontology of the vertebrate skeletal system

artículo científico publicado en 2012

All the Clades in the World: Building a Semantically-Rich and Testable Ontology of Phylogenetic Clade Definitions

scholarly article by Gaurav Vaidya et al published 21 May 2018 in Biodiversity Information Science and Standards

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

artículo científico publicado en 2018

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

artículo científico publicado en 2014

Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare

artículo científico publicado en 2020

Applications of a rat multiple tissue gene expression data set.

artículo científico publicado en 2004

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

artículo científico publicado en 2022

Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

artículo científico publicado en 2014

Community and Code: Nine Lessons from Nine NESCent Hackathons

Data Carpentry: Workshops to Increase Data Literacy for Researchers

article by Tracy K. Teal et al published 18 March 2015 in International Journal of Digital Curation

Data and animal management software for large-scale phenotype screening

artículo científico publicado en 2006

Developing educational resources for population genetics in R: an open and collaborative approach

artículo científico publicado en 2016

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks

artículo científico publicado en 2023

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

artículo científico publicado en 2018

Enabling Machines to Integrate Biodiversity Data with Evolutionary Knowledge

artículo científico publicado en 2020

Erratum: Publisher Correction: Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare

artículo científico publicado en 2020

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

artículo científico publicado en 2010

Exploring trafficking GTPase function by mRNA expression profiling: use of the SymAtlas web-application and the Membrome datasets

artículo científico publicado en 2005

Finding our way through phenotypes

artículo científico publicado en 2015

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.

artículo científico

Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity

JPhyloRef: a tool for testing and resolving phyloreferences

scientific article published on 14 August 2021

Large-scale profiling of Rab GTPase trafficking networks: the membrome

artículo científico publicado en 2005

Liberating Our Beautiful Trees: A Call to Arms

Linking big: the continuing promise of evolutionary synthesis

artículo científico publicado en 2009

Meeting Report for the Phenoscape TraitFest 2023 with Comments on Organising Interdisciplinary Meetings

scientific article published in 2024

Meeting Report: BioSharing at ISMB 2010

artículo científico publicado en 2010

Molecular classification of human carcinomas by use of gene expression signatures.

artículo científico publicado en 2001

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy

artículo científico publicado en 2015

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

artículo científico publicado en 2016

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

artículo científico publicado en 2012

Open source tools and toolkits for bioinformatics: significance, and where are we?

artículo científico publicado en 2006

Organizing our knowledge of biodiversity

article

Overview of FEED, the feeding experiments end-user database

artículo científico publicado en 2011

Phenex: ontological annotation of phenotypic diversity

artículo científico publicado en 2010

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

artículo científico publicado en 2016

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

scholarly article published 13 June 2018

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

article

Phyloreferences: Tree-Native, Reproducible, and Machine-Interpretable Taxon Concepts

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

artículo científico publicado en 2013

RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.

artículo científico publicado en 2012

RNeXML: a package for reading and writing richly annotated phylogenetic, character and trait data in r

scholarly article by Carl Boettiger et al published 19 October 2015 in Methods in Ecology and Evolution

Robust DNA microarray image analysis

article

Robust parametric and semi-parametric spot fitting for spot array images

artículo científico publicado en 2000

Science incubators: synthesis centers and their role in the research ecosystem

artículo científico publicado en 2013

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

article

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

artículo científico publicado en 2016

The 2016 Bioinformatics Open Source Conference (BOSC)

artículo científico publicado en 2016

The 2017 Bioinformatics Open Source Conference (BOSC).

artículo científico publicado en 2017

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

artículo científico publicado en 2018

The Bioinformatics Open Source Conference (BOSC) 2013

artículo científico publicado en 2015

The Bioinformatics Open Source Conference (BOSC) 2013

The Bioperl toolkit: Perl modules for the life sciences

artículo científico publicado en 2002

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

artículo científico publicado en 2011

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

artículo científico publicado en 2010

The PLOS Computational Biology Software Section

artículo científico publicado en 2012

The Primate Life History Database: A unique shared ecological data resource

artículo científico publicado en 2010

The teleost anatomy ontology: anatomical representation for the genomics age

artículo científico publicado en 2010

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

artículo científico publicado en 2013

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

artículo científico publicado en 2015

Towards an integrated ecosystem of R packages for the analysis of population genetic data

artículo científico publicado en 2016

TreeBASE2: Rise of the Machines

article

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

artículo científico

What is an anatomy ontology?

artículo científico publicado en 2013

apex: phylogenetics with multiple genes

artículo científico publicado en 2016

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

scientific article published in 2023

Lista de obras de Hilmar Lapp

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

A <scp>FAIR</scp> and modular image‐based workflow for knowledge discovery in the emerging field of imageomics

A Logical Model of Homology for Comparative Biology

A gene atlas of the mouse and human protein-encoding transcriptomes

A logical model of homology for comparative biology

A unified anatomy ontology of the vertebrate skeletal system

All the Clades in the World: Building a Semantically-Rich and Testable Ontology of Phylogenetic Clade Definitions

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare

Applications of a rat multiple tissue gene expression data set.

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

Community and Code: Nine Lessons from Nine NESCent Hackathons

Data Carpentry: Workshops to Increase Data Literacy for Researchers

Data and animal management software for large-scale phenotype screening

Developing educational resources for population genetics in R: an open and collaborative approach

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

Enabling Machines to Integrate Biodiversity Data with Evolutionary Knowledge

Erratum: Publisher Correction: Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

Exploring trafficking GTPase function by mRNA expression profiling: use of the SymAtlas web-application and the Membrome datasets

Finding our way through phenotypes

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.

Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity

JPhyloRef: a tool for testing and resolving phyloreferences

Large-scale profiling of Rab GTPase trafficking networks: the membrome

Liberating Our Beautiful Trees: A Call to Arms

Linking big: the continuing promise of evolutionary synthesis

Meeting Report for the Phenoscape TraitFest 2023 with Comments on Organising Interdisciplinary Meetings

Meeting Report: BioSharing at ISMB 2010

Molecular classification of human carcinomas by use of gene expression signatures.

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

Open source tools and toolkits for bioinformatics: significance, and where are we?

Organizing our knowledge of biodiversity

Overview of FEED, the feeding experiments end-user database

Phenex: ontological annotation of phenotypic diversity

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phyloreferences: Tree-Native, Reproducible, and Machine-Interpretable Taxon Concepts

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.

RNeXML: a package for reading and writing richly annotated phylogenetic, character and trait data in r

Robust DNA microarray image analysis

Robust parametric and semi-parametric spot fitting for spot array images

Science incubators: synthesis centers and their role in the research ecosystem

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

The 2016 Bioinformatics Open Source Conference (BOSC)

The 2017 Bioinformatics Open Source Conference (BOSC).

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

The Bioinformatics Open Source Conference (BOSC) 2013

The Bioinformatics Open Source Conference (BOSC) 2013

The Bioperl toolkit: Perl modules for the life sciences

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

The PLOS Computational Biology Software Section

The Primate Life History Database: A unique shared ecological data resource

The teleost anatomy ontology: anatomical representation for the genomics age

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

Towards an integrated ecosystem of R packages for the analysis of population genetic data

TreeBASE2: Rise of the Machines

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

What is an anatomy ontology?

apex: phylogenetics with multiple genes

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits