Lista de obras - Vera van Noort - Dominio Público Uruguay

A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex

artículo científico publicado en 2019

A VersaTile-driven platform for rapid hit-to-lead development of engineered lysins

artículo científico publicado en 2020

A quantitative liposome microarray to systematically characterize protein-lipid interactions

artículo científico publicado en 2013

A suppressor of axillary meristem maturation promotes longevity in flowering plants

artículo científico publicado en 2020

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana.

artículo científico publicado en 2017

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

artículo científico publicado en 2015

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

artículo científico publicado en 2014

Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins

artículo científico publicado en 2012

Assessment of phylogenomic and orthology approaches for phylogenetic inference

artículo científico publicado en 2007

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

artículo científico publicado en 2003

CART-a chemical annotation retrieval toolkit

artículo científico publicado en 2016

Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219.

artículo científico publicado en 2017

Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model.

artículo científico publicado en 2017

Catabolism of the groundwater micropollutant 2,6-dichlorobenzamide beyond 2,6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1

scientific article published on 08 July 2018

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding

artículo científico publicado en 2013

Combinatorial gene regulation in Plasmodium falciparum

artículo científico publicado en 2005

Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain

artículo científico publicado en 2019

Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".

artículo científico publicado en 2014

Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.

artículo científico publicado en 2018

Comparative genomics for reliable protein-function prediction from genomic data

artículo científico publicado en 2004

Comparative genomics of the Rab protein family in Apicomplexan parasites

artículo científico publicado en 2008

Consistent mutational paths predict eukaryotic thermostability

artículo científico publicado en 2013

Correlated duplications and losses in the evolution of palmitoylation writer and eraser families

artículo científico publicado en 2017

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

artículo científico publicado en 2012

Deciphering a global network of functionally associated post-translational modifications

artículo científico publicado en 2012

Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium

artículo científico publicado en 2015

Dietary intervention and health in patients with systemic lupus erythematosus: A systematic review of the evidence

artículo científico publicado en 2018

Digital phagograms: predicting phage infectivity through a multilayer machine learning approach

artículo científico publicado en 2022

Discovery and validation of the antimetastatic activity of citalopram in colorectal cancer

artículo científico publicado en 2015

Drug discovery in the age of systems biology: the rise of computational approaches for data integration.

artículo científico publicado en 2011

Drug-induced regulation of target expression

artículo científico publicado en 2010

Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes

artículo científico publicado en 2018

Evolution and functional cross-talk of protein post-translational modifications

artículo científico publicado en 2013

Evolutionary conservation of Ebola virus proteins predicts important functions at residue level.

artículo científico publicado en 2016

Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions

artículo científico publicado en 2007

FLAMS: Find Lysine Acylations and other Modification Sites

artículo científico publicado en 2024

Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes

artículo científico publicado en 2004

Genome-driven elucidation of phage-host interplay and impact of phage resistance evolution on bacterial fitness

artículo científico publicado en 2022

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

artículo científico publicado en 2021

Human monogenic disease genes have frequently functionally redundant paralogs

artículo científico publicado en 2013

Impact of genome reduction on bacterial metabolism and its regulation.

artículo científico publicado en 2009

Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile

artículo científico publicado en 2011

Integrated Multi-Omics Analysis of Mechanisms Underlying Yeast Ethanol Tolerance

artículo científico publicado en 2021

Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances

artículo científico

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

artículo científico publicado en 2020

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

artículo científico publicado en 2019

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

artículo científico publicado en 2018

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

artículo científico publicado en 2015

Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions

artículo científico publicado en 2021

Network neighbors of drug targets contribute to drug side-effect similarity

artículo científico publicado en 2011

New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae

scientific article published on 03 May 2019

Novel drug candidates for the treatment of metastatic colorectal cancer through global inverse gene-expression profiling

artículo científico publicado en 2014

Orthology prediction at scalable resolution by phylogenetic tree analysis

artículo científico publicado en 2007

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution ⬇️

artículo científico publicado en 2008

Predicting gene function by conserved co-expression

artículo científico publicado en 2003

Prediction of drug combinations by integrating molecular and pharmacological data

artículo científico publicado en 2011

Proteome organization in a genome-reduced bacterium

scientific journal article

Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity

artículo científico publicado en 2008

Quality control and statistical evaluation of combinatorial DNA libraries using nanopore sequencing

artículo científico publicado en 2020

Repeatability of published microarray gene expression analyses

artículo científico publicado en 2009

Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole Genome Duplication

article

Spike-in SILAC proteomic approach reveals the vitronectin as an early molecular signature of liver fibrosis in hepatitis C infections with hepatic iron overload

artículo científico publicado en 2014

Strand misalignments lead to quasipalindrome correction

article

The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids

artículo científico publicado en 2021

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

artículo científico publicado en 2004

Transcriptome Complexity in a Genome-Reduced Bacterium

artículo científico publicado en 2009

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts

artículo científico publicado en 2016

yMap: an automated method to map yeast variants to protein modifications and functional regions

artículo científico publicado en 2016

Lista de obras de Vera van Noort

A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex

A VersaTile-driven platform for rapid hit-to-lead development of engineered lysins

A quantitative liposome microarray to systematically characterize protein-lipid interactions

A suppressor of axillary meristem maturation promotes longevity in flowering plants

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana.

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins

Assessment of phylogenomic and orthology approaches for phylogenetic inference

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

CART-a chemical annotation retrieval toolkit

Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219.

Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model.

Catabolism of the groundwater micropollutant 2,6-dichlorobenzamide beyond 2,6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding

Combinatorial gene regulation in Plasmodium falciparum

Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain

Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".

Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.

Comparative genomics for reliable protein-function prediction from genomic data

Comparative genomics of the Rab protein family in Apicomplexan parasites

Consistent mutational paths predict eukaryotic thermostability

Correlated duplications and losses in the evolution of palmitoylation writer and eraser families

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

Deciphering a global network of functionally associated post-translational modifications

Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium

Dietary intervention and health in patients with systemic lupus erythematosus: A systematic review of the evidence

Digital phagograms: predicting phage infectivity through a multilayer machine learning approach

Discovery and validation of the antimetastatic activity of citalopram in colorectal cancer

Drug discovery in the age of systems biology: the rise of computational approaches for data integration.

Drug-induced regulation of target expression

Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes

Evolution and functional cross-talk of protein post-translational modifications

Evolutionary conservation of Ebola virus proteins predicts important functions at residue level.

Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions

FLAMS: Find Lysine Acylations and other Modification Sites

Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes

Genome-driven elucidation of phage-host interplay and impact of phage resistance evolution on bacterial fitness

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

Human monogenic disease genes have frequently functionally redundant paralogs

Impact of genome reduction on bacterial metabolism and its regulation.

Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile

Integrated Multi-Omics Analysis of Mechanisms Underlying Yeast Ethanol Tolerance

Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions

Network neighbors of drug targets contribute to drug side-effect similarity

New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae

Novel drug candidates for the treatment of metastatic colorectal cancer through global inverse gene-expression profiling

Orthology prediction at scalable resolution by phylogenetic tree analysis

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution ⬇️

Predicting gene function by conserved co-expression

Prediction of drug combinations by integrating molecular and pharmacological data

Proteome organization in a genome-reduced bacterium

Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity

Quality control and statistical evaluation of combinatorial DNA libraries using nanopore sequencing

Repeatability of published microarray gene expression analyses

Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole Genome Duplication

Spike-in SILAC proteomic approach reveals the vitronectin as an early molecular signature of liver fibrosis in hepatitis C infections with hepatic iron overload

Strand misalignments lead to quasipalindrome correction

The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

Transcriptome Complexity in a Genome-Reduced Bacterium

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts

yMap: an automated method to map yeast variants to protein modifications and functional regions