Lista de obras - Trevor Bedford - Dominio Público Uruguay

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

artículo científico publicado en 2020

A Novel SARS-CoV-2 Variant of Concern, B.1.526, Identified in New York

artículo científico publicado en 2021

ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. ⬇️

artículo científico publicado en 2015

Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks

artículo científico publicado en 2021

Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster

artículo científico publicado en 2010

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

artículo científico publicado en 2021

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza

artículo científico publicado en 2017

Canalization of the evolutionary trajectory of the human influenza virus

artículo científico publicado en 2012

Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics

artículo científico publicado en 2020

Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics

artículo científico publicado en 2020

Characteristics of COVID-19 in Homeless Shelters : A Community-Based Surveillance Study

scientific article published on 15 September 2020

Clustered Mutations at the Murine and Human IgH Locus Exhibit Significant Linkage Consistent with Templated Mutagenesis

artículo científico publicado en 2019

Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans

scientific article published on 30 April 2019

Comprehensive mapping of avian influenza polymerase adaptation to the human host

Correction: MERS-CoV spillover at the camel-human interface.

artículo científico publicado en 2018

CpG-creating mutations are costly in many human viruses

artículo científico publicado en 2020

Cross-Sectional Prevalence of SARS-CoV-2 Among Skilled Nursing Facility Employees and Residents Across Facilities in Seattle

artículo científico publicado en 2020

Cryptic transmission of SARS-CoV-2 in Washington State

artículo científico publicado en 2020

Cryptic transmission of SARS-CoV-2 in Washington state

scientific article published on 10 September 2020

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

article published in the Proceedings of the National Academy of Sciences of the United States of America

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

Dengue genetic divergence generates within-serotype antigenic variation, but serotypes dominate evolutionary dynamics

scientific article published on 06 August 2019

Did a Single Amino Acid Change Make Ebola Virus More Virulent?

artículo científico publicado en 2016

Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform

scientific article published on 01 May 2020

Early prediction of antigenic transitions for influenza A/H3N2

artículo científico publicado en 2020

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

artículo científico publicado en 2015

Effects of weather-related social distancing on city-scale transmission of respiratory viruses

scientific article (preprint)

Eight challenges in phylodynamic inference.

artículo científico publicado en 2014

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

artículo científico publicado en 2017

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

artículo científico publicado en 2017

Estimating Vaccine-Driven Selection in Seasonal Influenza

article

Evidence for Limited Early Spread of COVID-19 Within the United States, January-February 2020

artículo científico publicado en 2020

Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e

artículo científico publicado en 2021

Evolvability of Hsp70 expression under artificial election for inducible thermotolerance in independent populations of Drosophila melanogaster

artículo científico publicado en 2002

Explaining the geographical origins of seasonal influenza A (H3N2).

artículo científico publicado en 2016

Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster

artículo científico publicado en 2008

Gene conversion as a source of nucleotide diversity in Plasmodium falciparum

artículo científico publicado en 2003

Genetic Diversity and Protective Efficacy of the RTS,S/AS01 Malaria Vaccine

artículo científico publicado en 2015

Genetic characterization of the Zika virus epidemic in the US Virgin Islands

artículo científico publicado en 2017

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

artículo científico publicado en 2017

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

artículo científico publicado en 2017

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

article

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia. ⬇️

artículo científico publicado en 2019

Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum

artículo científico publicado en 2006

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California ⬇️

artículo científico publicado en 2020

Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus

artículo científico publicado en 2016

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

artículo científico publicado en 2015

Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)

artículo científico publicado en 2010

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

artículo científico publicado en 2014

Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes

artículo científico publicado en 2020

High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters

artículo científico publicado en 2020

Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses.

artículo científico publicado en 2016

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

artículo científico publicado en 2012

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

scientific article published on 02 September 2020

Integrating influenza antigenic dynamics with molecular evolution

artículo científico publicado en 2014

LB21. The Seattle Flu Study: A Community-Based Study of Influenza

artículo científico publicado en 2019

Lorenzo-Redondo et al. reply

artículo científico publicado en 2017

MERS-CoV spillover at the camel-human interface

artículo científico publicado en 2018

MERS-CoV spillover at the camel-human interface

scientific article published on 11 August 2017

Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin

scientific article published on 27 August 2019

Massive Iatrogenic Outbreak of Human Immunodeficiency Virus Type 1 in Rural Cambodia, 2014-2015.

artículo científico publicado en 2017

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

artículo científico publicado en 2017

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

artículo científico publicado en 2017

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

artículo científico publicado en 2017

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

artículo científico publicado en 2017

Nextstrain: real-time tracking of pathogen evolution.

artículo científico publicado en 2018

Optimization of gene expression by natural selection

scholarly article

Overdispersion of the molecular clock varies between yeast, Drosophila and mammals

artículo científico publicado en 2008

Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila

artículo científico publicado en 2008

Persistent HIV-1 replication maintains the tissue reservoir during therapy

artículo científico publicado en 2016

Phylowood: interactive web-based animations of biogeographic and phylogeographic histories

artículo científico publicado en 2013

Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages

artículo científico publicado en 2015

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. ⬇️

artículo científico publicado en 2016

Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology.

artículo científico publicado en 2017

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference ⬇️

artículo científico publicado en 2016

Quantifying evolutionary constraints on B-cell affinity maturation

artículo científico publicado en 2015

Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia

artículo científico publicado en 2020

Real-time analysis and visualization of pathogen sequence data

artículo científico publicado en 2018

Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex

artículo científico publicado en 2015

Remote Household Observation for Non-influenza Respiratory Viral Illness

scientific article published on 17 November 2020

Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State

artículo científico

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

scientific article published in 2021

Seasonal influenza circulation patterns and projections for 2016-2017

Seasonal influenza circulation patterns and projections for 2017-2018

Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018

Seasonality in the migration and establishment of H3N2 Influenza lineages with epidemic growth and decline

artículo científico publicado en 2014

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution

artículo científico publicado en 2015

Spatial guilds in the Serengeti food web revealed by a Bayesian group model

artículo científico publicado en 2011

Strength and tempo of selection revealed in viral gene genealogies

artículo científico publicado en 2011

Ten recommendations for supporting open pathogen genomic analysis in public health

artículo científico publicado en 2020

The Seattle Flu Study: a multi-arm community-based prospective study protocol for assessing influenza prevalence, transmission, and genomic epidemiology

artículo científico publicado en 2020

The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology

artículo científico publicado en 2020

The ability of single genes vs full genomes to resolve time and space in outbreak analysis

scientific article published on 26 December 2019

The ability of single genes vs full genomes to resolve time and space in outbreak analysis

artículo científico publicado en 2019

The roles of competition and mutation in shaping antigenic and genetic diversity in influenza

artículo científico publicado en 2013

Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak.

artículo científico publicado en 2015

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain

scientific article published on 31 October 2019

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

artículo científico publicado en 2014

Viral Phylodynamics

artículo científico publicado en 2013

Viral factors in influenza pandemic risk assessment.

artículo científico publicado en 2016

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

artículo científico publicado en 2020

Virus genomes reveal factors that spread and sustained the Ebola epidemic

artículo científico publicado en 2017

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

article published in 2016

Within-Host Evolution of Human Influenza Virus.

artículo científico publicado en 2018

dms-view: Interactive visualization tool for deep mutational scanning data

artículo científico publicado en 2020

nextflu: real-time tracking of seasonal influenza virus evolution in humans

artículo científico publicado en 2015

Lista de obras de Trevor Bedford

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

A Novel SARS-CoV-2 Variant of Concern, B.1.526, Identified in New York

ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. ⬇️

Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks

Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza

Canalization of the evolutionary trajectory of the human influenza virus

Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics

Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics

Characteristics of COVID-19 in Homeless Shelters : A Community-Based Surveillance Study

Clustered Mutations at the Murine and Human IgH Locus Exhibit Significant Linkage Consistent with Templated Mutagenesis

Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans

Comprehensive mapping of avian influenza polymerase adaptation to the human host

Correction: MERS-CoV spillover at the camel-human interface.

CpG-creating mutations are costly in many human viruses

Cross-Sectional Prevalence of SARS-CoV-2 Among Skilled Nursing Facility Employees and Residents Across Facilities in Seattle

Cryptic transmission of SARS-CoV-2 in Washington State

Cryptic transmission of SARS-CoV-2 in Washington state

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

Dengue genetic divergence generates within-serotype antigenic variation, but serotypes dominate evolutionary dynamics

Did a Single Amino Acid Change Make Ebola Virus More Virulent?

Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform

Early prediction of antigenic transitions for influenza A/H3N2

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

Effects of weather-related social distancing on city-scale transmission of respiratory viruses

Eight challenges in phylodynamic inference.

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

Estimating Vaccine-Driven Selection in Seasonal Influenza

Evidence for Limited Early Spread of COVID-19 Within the United States, January-February 2020

Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e

Evolvability of Hsp70 expression under artificial election for inducible thermotolerance in independent populations of Drosophila melanogaster

Explaining the geographical origins of seasonal influenza A (H3N2).

Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster

Gene conversion as a source of nucleotide diversity in Plasmodium falciparum

Genetic Diversity and Protective Efficacy of the RTS,S/AS01 Malaria Vaccine

Genetic characterization of the Zika virus epidemic in the US Virgin Islands

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia. ⬇️

Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California ⬇️

Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes

High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters

Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses.

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

Integrating influenza antigenic dynamics with molecular evolution

LB21. The Seattle Flu Study: A Community-Based Study of Influenza

Lorenzo-Redondo et al. reply

MERS-CoV spillover at the camel-human interface

MERS-CoV spillover at the camel-human interface

Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin

Massive Iatrogenic Outbreak of Human Immunodeficiency Virus Type 1 in Rural Cambodia, 2014-2015.

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Nextstrain: real-time tracking of pathogen evolution.

Optimization of gene expression by natural selection

Overdispersion of the molecular clock varies between yeast, Drosophila and mammals

Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila

Persistent HIV-1 replication maintains the tissue reservoir during therapy

Phylowood: interactive web-based animations of biogeographic and phylogeographic histories

Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. ⬇️

Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology.

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference ⬇️

Quantifying evolutionary constraints on B-cell affinity maturation

Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia

Real-time analysis and visualization of pathogen sequence data

Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex