Lista de obras - C. Titus Brown - Dominio Público Uruguay

A Missense Mutation in the Vacuolar Protein Sorting 11 () Gene Is Associated with Neuroaxonal Dystrophy in Rottweiler Dogs

article

A Missense Variant in ALDH5A1 Associated with Canine Succinic Semialdehyde Dehydrogenase Deficiency (SSADHD) in the Saluki Dog

artículo científico publicado en 2020

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

artículo científico publicado en 2016

A genomic regulatory network for development

artículo científico publicado en 2002

A phylogenetically novel cyanobacterium most closely related to Gloeobacter

artículo científico publicado en 2020

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo

artículo científico publicado en 2002

A thermogenic secondary sexual character in male sea lamprey

artículo científico publicado en 2013

A virtual training module for introducing the use of Amazon Web Services

artículo científico publicado en 2022

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

artículo científico publicado en 2017

Abundance-distributions in artificial life and stochastic models: “age and area” revisited

article

Advancing the microbiome research community

artículo científico publicado en 2014

Anaerobic regulation by an atypical Arc system in Shewanella oneidensis.

artículo científico publicado en 2005

Author Correction: Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull

scientific article published on 01 February 2020

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Best practices for scientific computing ⬇️

artículo científico publicado en 2014

Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis.

artículo científico publicado en 2017

Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

artículo científico publicado en 2017

Cephalopod genomics: A plan of strategies and organization

artículo científico publicado en 2012

Changing computational research. The challenges ahead

artículo científico publicado en 2012

Channeling Community Contributions to Scientific Software: A Sprint Experience

artículo científico publicado en 2016

Charting Shifts in Saccharomyces cerevisiae Gene Expression across Asynchronous Time Trajectories with Diffusion Maps

artículo científico publicado en 2021

Computational approaches to finding and analyzing cis-regulatory elements

artículo científico publicado en 2008

Correction to: Transcriptome of the caribbean stony coral Porites astreoides from three developmental stages

scientific article published on 01 November 2019

Critical Assessment of Metagenome Interpretation: the second round of challenges

artículo científico publicado en 2022

Differentially-Expressed Pseudogenes in HIV-1 Infection

artículo científico publicado en 2015

Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians

artículo científico publicado en 2014

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

artículo científico publicado en 2008

Draft genome of tule elk Cervus canadensis nannodes

artículo científico publicado en 2017

Draft genome sequences of two Campylobacter jejuni clinical isolates, NW and D2600.

artículo científico publicado en 2012

Efficient cardinality estimation for k-mers in large DNA sequencing data sets

Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants

Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

artículo científico publicado en 2004

Evolutionary loss of melanogenesis in the tunicate Molgula occulta

artículo científico publicado en 2017

Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity

artículo científico publicado en 2020

FGF4 Retrogene On CFA12 Is Responsible For Chondrodystrophy And Intervertebral Disc Disease In Dogs

FGF4 retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs

artículo científico publicado en 2017

FunGene: the functional gene pipeline and repository

artículo científico publicado en 2013

Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.

artículo científico publicado en 2006

Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull

artículo científico publicado en 2019

Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage

artículo científico publicado en 2020

Genomic resources for the study of sea urchin development

artículo científico publicado en 2004

Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms

artículo científico publicado en 2014

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

artículo científico publicado en 2016

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution

artículo científico publicado en 2006

How open science helps researchers succeed ⬇️

artículo científico publicado en 2016

Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis.

artículo científico publicado en 2015

Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development

artículo científico publicado en 2006

Identification of long non-coding RNA in the horse transcriptome

artículo científico publicado en 2017

Insights into the evolution of oxygenic photosynthesis from a phylogenetically novel, low-light cyanobacterium

scholarly article published 1 June 2018

Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by a Marek's disease virus oncoprotein, Meq.

artículo científico publicado en 2013

Keeping it light: (re)analyzing community-wide datasets without major infrastructure.

artículo científico publicado en 2019

Large-scale sequence comparisons with sourmash

artículo científico publicado en 2019

METHODS TO ENSURE THE REPRODUCIBILITY OF BIOMEDICAL RESEARCH.

artículo científico publicado en 2016

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

artículo científico publicado en 2010

Metagenomics: The Paths Forward

Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes

artículo científico publicado en 2015

Microbial metabolites in the marine carbon cycle

artículo científico publicado en 2022

New computational approaches for analysis of cis-regulatory networks.

artículo científico publicado en 2002

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

artículo científico publicado en 2005

Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin

artículo científico publicado en 2002

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships

artículo científico publicado en 2014

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

article published in 2018

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

artículo científico publicado en 2019

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

artículo científico publicado en 2019

Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes

artículo científico publicado en 2019

Ribosomal Database Project: data and tools for high throughput rRNA analysis

artículo científico publicado en 2013

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

artículo científico publicado en 2012

Sea urchin Forkhead gene family: phylogeny and embryonic expression

artículo científico publicado en 2006

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

artículo científico publicado en 2013

Space-efficient read indexing and retrieval based on compressed de Bruijn graphs

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host

artículo científico publicado en 2011

Strain recovery from metagenomes

artículo científico publicado en 2015

Streamlining data-intensive biology with workflow systems

scientific article published on 19 January 2021

Sustainable computational science: the ReScience initiative ⬇️

article

Tackling soil diversity with the assembly of large, complex metagenomes

artículo científico publicado en 2014

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

artículo científico publicado en 2013

The genome of the sea urchin Strongylocentrotus purpuratus

artículo científico publicado en 2006

The khmer software package: enabling efficient nucleotide sequence analysis

artículo científico publicado en 2015

The principles of tomorrow's university

The sea lamprey has a primordial accessory olfactory system

artículo científico publicado en 2013

These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure

artículo científico publicado en 2014

Third Report on Chicken Genes and Chromosomes 2015.

scientific article published on 14 July 2015

Tissue Resolved, Gene Structure Refined Equine Transcriptome

article

Tissue resolved, gene structure refined equine transcriptome

artículo científico publicado en 2017

Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages

artículo científico publicado en 2016

Virtual training on virtual environments: an online open-source introduction to conda

artículo científico publicado en 2021

Visualizing Evolutionary Activity of Genotypes

artículo científico publicado en 1999

Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

artículo científico publicado en 2016

Whole genome sequencing for mutation discovery in a single case of lysosomal storage disease (MPS type 1) in the dog

scientific article published on 16 April 2020

Whole genome variant association across 100 dogs identifies a frame shift mutation in DISHEVELLED 2 which contributes to Robinow-like syndrome in Bulldogs and related screw tail dog breeds

artículo científico publicado en 2018

Workshop: Graph compression approaches in assembly

Xander: employing a novel method for efficient gene-targeted metagenomic assembly

artículo científico publicado en 2015

Lista de obras de C. Titus Brown

A Missense Mutation in the Vacuolar Protein Sorting 11 () Gene Is Associated with Neuroaxonal Dystrophy in Rottweiler Dogs

A Missense Variant in ALDH5A1 Associated with Canine Succinic Semialdehyde Dehydrogenase Deficiency (SSADHD) in the Saluki Dog

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

A genomic regulatory network for development

A phylogenetically novel cyanobacterium most closely related to Gloeobacter

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo

A thermogenic secondary sexual character in male sea lamprey

A virtual training module for introducing the use of Amazon Web Services

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

Abundance-distributions in artificial life and stochastic models: “age and area” revisited

Advancing the microbiome research community

Anaerobic regulation by an atypical Arc system in Shewanella oneidensis.

Author Correction: Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Best practices for scientific computing ⬇️

Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis.

Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

Cephalopod genomics: A plan of strategies and organization

Changing computational research. The challenges ahead

Channeling Community Contributions to Scientific Software: A Sprint Experience

Charting Shifts in Saccharomyces cerevisiae Gene Expression across Asynchronous Time Trajectories with Diffusion Maps

Computational approaches to finding and analyzing cis-regulatory elements

Correction to: Transcriptome of the caribbean stony coral Porites astreoides from three developmental stages

Critical Assessment of Metagenome Interpretation: the second round of challenges

Differentially-Expressed Pseudogenes in HIV-1 Infection

Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

Draft genome of tule elk Cervus canadensis nannodes

Draft genome sequences of two Campylobacter jejuni clinical isolates, NW and D2600.

Efficient cardinality estimation for k-mers in large DNA sequencing data sets

Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants

Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

Evolutionary loss of melanogenesis in the tunicate Molgula occulta

Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity

FGF4 Retrogene On CFA12 Is Responsible For Chondrodystrophy And Intervertebral Disc Disease In Dogs

FGF4 retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs

FunGene: the functional gene pipeline and repository

Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.

Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull

Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage

Genomic resources for the study of sea urchin development

Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution

How open science helps researchers succeed ⬇️

Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis.

Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development

Identification of long non-coding RNA in the horse transcriptome

Insights into the evolution of oxygenic photosynthesis from a phylogenetically novel, low-light cyanobacterium

Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by a Marek's disease virus oncoprotein, Meq.

Keeping it light: (re)analyzing community-wide datasets without major infrastructure.

Large-scale sequence comparisons with sourmash

METHODS TO ENSURE THE REPRODUCIBILITY OF BIOMEDICAL RESEARCH.

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

Metagenomics: The Paths Forward

Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes

Microbial metabolites in the marine carbon cycle

New computational approaches for analysis of cis-regulatory networks.

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes

Ribosomal Database Project: data and tools for high throughput rRNA analysis

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

Sea urchin Forkhead gene family: phylogeny and embryonic expression

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

Space-efficient read indexing and retrieval based on compressed de Bruijn graphs

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host

Strain recovery from metagenomes

Streamlining data-intensive biology with workflow systems

Sustainable computational science: the ReScience initiative ⬇️

Tackling soil diversity with the assembly of large, complex metagenomes

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

The genome of the sea urchin Strongylocentrotus purpuratus