Lista de obras - Yoav Gilad - Dominio Público Uruguay

A TAD Skeptic: Is 3D Genome Topology Conserved?

artículo científico publicado en 2020

A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway

artículo científico publicado en 2008

A comparison of gene expression and DNA methylation patterns across tissues and species

artículo científico publicado en 2020

A framework for exploring functional variability in olfactory receptor genes

artículo científico publicado en 2007

A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees

artículo científico publicado en 2019

A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar

artículo científico publicado en 2012

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

artículo científico publicado en 2011

A reanalysis of mouse ENCODE comparative gene expression data

artículo científico publicado en 2015

Absence of the TAP2 human recombination hotspot in chimpanzees

artículo científico publicado en 2004

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

artículo científico publicado en 2011

Alternative polyadenylation mediates genetic regulation of gene expression

scientific article published on 25 June 2020

An evolutionarily conserved sexual signature in the primate brain

artículo científico publicado en 2008

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

artículo científico publicado en 2020

Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

artículo científico publicado en 2007

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

artículo científico publicado en 2013

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

artículo científico publicado en 2012

Comparative studies of gene expression and the evolution of gene regulation

artículo científico publicado en 2012

Controls of nucleosome positioning in the human genome.

artículo científico publicado en 2012

Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta)

artículo científico publicado en 2009

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

artículo científico publicado en 2011

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

artículo científico publicado en 2012

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

artículo científico publicado en 2019

Does a unique olfactory genome imply a unique olfactory world?

artículo científico publicado en 2014

Dynamic genetic regulation of gene expression during cellular differentiation

scientific article published on 01 June 2019

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

artículo científico publicado en 2009

Effective study design for comparative functional genomics

artículo científico publicado en 2020

Epigenetic modifications are associated with inter-species gene expression variation in primates

artículo científico publicado en 2014

Evidence for positive selection and population structure at the human MAO-A gene

artículo científico publicado en 2002

Evolution of bitter taste receptors in humans and apes

artículo científico publicado en 2005

Evolutionary insights into primate skeletal gene regulation using a comparative cell culture model

artículo científico publicado en 2022

Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data ⬇️

artículo científico publicado en 2012

Expression profiling in primates reveals a rapid evolution of human transcription factors

artículo científico publicado en 2006

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions

artículo científico publicado en 2011

Functional comparison of innate immune signaling pathways in primates

artículo científico publicado en 2010

Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions

artículo científico

Gene expression differences among primates are associated with changes in a histone epigenetic modification

artículo científico publicado en 2011

Gene expression variability in human and chimpanzee populations share common determinants

artículo científico publicado en 2020

Gene regulation in primates evolves under tissue-specific selection pressures

artículo científico publicado en 2008

Genome-Wide Association Studies of the Human Gut Microbiota

artículo científico publicado en 2015

Genomic-scale capture and sequencing of endogenous DNA from feces

artículo científico publicado en 2010

Genomics: ENCODE explained

artículo científico publicado en 2012

High-resolution mapping of expression-QTLs yields insight into human gene regulation

artículo científico publicado en 2008

Host genetic variation influences gene expression response to rhinovirus infection

artículo científico publicado en 2015

Human specific loss of olfactory receptor genes

artículo científico publicado en 2003

Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates

artículo científico publicado en 2004

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

artículo científico publicado en 2014

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

artículo científico publicado en 2005

Natural selection on the olfactory receptor gene family in humans and chimpanzees

artículo científico publicado en 2003

Noisy splicing drives mRNA isoform diversity in human cells.

artículo científico publicado en 2010

Population differences in the human functional olfactory repertoire

artículo científico publicado en 2003

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

artículo científico publicado en 2017

Prime time for primate functional genomics

artículo científico publicado en 2020

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

artículo científico publicado en 2008

RNA-seq: impact of RNA degradation on transcript quantification

artículo científico publicado en 2014

Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9.

artículo científico publicado en 2017

Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates

artículo científico publicado en 2019

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

artículo científico publicado en 2015

Revealing the architecture of gene regulation: the promise of eQTL studies

artículo científico publicado en 2008

Seasonal variation in human gut microbiome composition

artículo científico publicado en 2014

Sex-specific and lineage-specific alternative splicing in primates

artículo científico publicado en 2009

Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.

artículo científico publicado en 2018

Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation

artículo científico publicado en 2022

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

artículo científico publicado en 2020

Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

artículo científico publicado en 2013

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

artículo científico publicado en 2012

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels

artículo científico publicado en 2012

The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines

artículo científico publicado en 2014

The functional consequences of variation in transcription factor binding.

artículo científico publicado en 2014

The genetic and mechanistic basis for variation in gene regulation

artículo científico publicado en 2015

The genetic architecture of gene expression levels in wild baboons

artículo científico publicado en 2015

Time-dependent transcriptional profiling links gene expression to mitogen-activated protein kinase kinase 4 (MKK4)-mediated suppression of omental metastatic colonization ⬇️

artículo científico publicado el 21 de febrero de 2012

Using genomic tools to study regulatory evolution

artículo científico publicado en 2012

Where Are the Disease-Associated eQTLs?

artículo científico publicado en 2020

Lista de obras de Yoav Gilad

A TAD Skeptic: Is 3D Genome Topology Conserved?

A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway

A comparison of gene expression and DNA methylation patterns across tissues and species

A framework for exploring functional variability in olfactory receptor genes

A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees

A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

A reanalysis of mouse ENCODE comparative gene expression data

Absence of the TAP2 human recombination hotspot in chimpanzees

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Alternative polyadenylation mediates genetic regulation of gene expression

An evolutionarily conserved sexual signature in the primate brain

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

Comparative studies of gene expression and the evolution of gene regulation

Controls of nucleosome positioning in the human genome.

Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta)

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

Does a unique olfactory genome imply a unique olfactory world?

Dynamic genetic regulation of gene expression during cellular differentiation

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

Effective study design for comparative functional genomics

Epigenetic modifications are associated with inter-species gene expression variation in primates

Evidence for positive selection and population structure at the human MAO-A gene

Evolution of bitter taste receptors in humans and apes

Evolutionary insights into primate skeletal gene regulation using a comparative cell culture model

Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data ⬇️

Expression profiling in primates reveals a rapid evolution of human transcription factors

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions

Functional comparison of innate immune signaling pathways in primates

Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions

Gene expression differences among primates are associated with changes in a histone epigenetic modification

Gene expression variability in human and chimpanzee populations share common determinants

Gene regulation in primates evolves under tissue-specific selection pressures

Genome-Wide Association Studies of the Human Gut Microbiota

Genomic-scale capture and sequencing of endogenous DNA from feces

Genomics: ENCODE explained

High-resolution mapping of expression-QTLs yields insight into human gene regulation

Host genetic variation influences gene expression response to rhinovirus infection

Human specific loss of olfactory receptor genes

Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

Natural selection on the olfactory receptor gene family in humans and chimpanzees

Noisy splicing drives mRNA isoform diversity in human cells.

Population differences in the human functional olfactory repertoire

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

Prime time for primate functional genomics

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

RNA-seq: impact of RNA degradation on transcript quantification

Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9.

Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

Revealing the architecture of gene regulation: the promise of eQTL studies

Seasonal variation in human gut microbiome composition

Sex-specific and lineage-specific alternative splicing in primates

Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.

Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels

The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines

The functional consequences of variation in transcription factor binding.

The genetic and mechanistic basis for variation in gene regulation

The genetic architecture of gene expression levels in wild baboons

Time-dependent transcriptional profiling links gene expression to mitogen-activated protein kinase kinase 4 (MKK4)-mediated suppression of omental metastatic colonization ⬇️

Using genomic tools to study regulatory evolution

Where Are the Disease-Associated eQTLs?

Widespread conservation of chromatin accessibility patterns and transcription factor binding in human and chimpanzee induced pluripotent stem cells