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Lista de obras de Marc Lipsitch

A missing dimension in measures of vaccination impacts

artículo científico publicado en 2014

A modified Janus cassette (Sweet Janus) to improve allelic replacement efficiency by high-stringency negative selection in Streptococcus pneumoniae

artículo científico publicado en 2014

A new approach to the analysis of antibiotic resistance data from hospitals

artículo científico publicado en 2014

Absolute Humidity and the Seasonal Onset of Influenza in the Continental US.

artículo científico publicado en 2009

Absolute humidity and pandemic versus epidemic influenza

artículo científico publicado en 2010

Absolute humidity and the seasonal onset of influenza in the continental United States

artículo científico publicado en 2010

Addendum: Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China

artículo científico publicado en 2020

Age- and serogroup-related differences in observed durations of nasopharyngeal carriage of penicillin-resistant pneumococci

artículo científico publicado en 2007

Age- and sex-related risk factors for influenza-associated mortality in the United States between 1997-2007.

artículo científico publicado en 2013

Age-specific immunoglobulin g (IgG) and IgA to pneumococcal protein antigens in a population in coastal kenya

artículo científico publicado en 2004

Aggregated mobility data could help fight COVID-19

artículo científico publicado en 2020

Alert threshold algorithms and malaria epidemic detection

artículo científico publicado en 2004

Analysis of a meningococcal meningitis outbreak in Niger - potential effectiveness of reactive prophylaxis

artículo científico publicado en 2019

Analysis of multiple bacterial species and antibiotic classes reveals large variation in the association between seasonal antibiotic use and resistance

scientific article published in 2022

Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection

scientific article published on 01 February 2019

Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection

scientific article published on 07 April 2018

Antibiotic Consumption and Antibiotic Resistance Across Organisms, Drugs, and Consumer Groups

artículo científico publicado en 2017

Antibiotic resistance--the interplay between antibiotic use in animals and human beings

artículo científico publicado en 2003

Antibiotics in agriculture and the risk to human health: how worried should we be?

artículo científico publicado en 2014

Antibiotics in agriculture: when is it time to close the barn door?

artículo científico publicado en 2002

Antibodies to conserved pneumococcal antigens correlate with, but are not required for, protection against pneumococcal colonization induced by prior exposure in a mouse model

artículo científico publicado en 2005

Antibody testing will enhance the power and accuracy of COVID-19-prevention trials

artículo científico publicado en 2020

Antibody-independent, CD4+ T-cell-dependent protection against pneumococcal colonization elicited by intranasal immunization with purified pneumococcal proteins

artículo científico publicado en 2007

Antibody-independent, interleukin-17A-mediated, cross-serotype immunity to pneumococci in mice immunized intranasally with the cell wall polysaccharide

artículo científico publicado en 2006

Antigenic Variation in Streptococcus pneumoniae PspC Promotes Immune Escape in the Presence of Variant-Specific Immunity

artículo científico publicado en 2018

Antimicrobial resistance prevalence, rates of hospitalization with septicemia and rates of mortality with sepsis in adults in different US states

scientific article published on 06 March 2019

Antimicrobial use and antimicrobial resistance: a population perspective

artículo científico publicado en 2002

Antiviral resistance and the control of pandemic influenza

artículo científico publicado en 2007

Antiviral usage for H1N1 treatment: pros, cons and an argument for broader prescribing guidelines in the United States.

artículo científico publicado en 2009

Apparent declining efficacy in randomized trials: examples of the Thai RV144 HIV vaccine and South African CAPRISA 004 microbicide trials

artículo científico publicado en 2012

Are anticapsular antibodies the primary mechanism of protection against invasive pneumococcal disease?

artículo científico publicado en 2005

Association of serotype with risk of death due to pneumococcal pneumonia: a meta-analysis

artículo científico publicado en 2010

Association of the pneumococcal pilus with certain capsular serotypes but not with increased virulence

artículo científico publicado en 2007

Avian influenza: Ferret H7N9 flu model questioned

artículo científico publicado en 2013

Azithromycin Susceptibility Among Neisseria gonorrhoeae Isolates and Seasonal Macrolide Use

artículo científico publicado en 2019

Bacterial vaccines and serotype replacement: lessons from Haemophilus influenzae and prospects for Streptococcus pneumoniae

artículo científico publicado en 1999

Beneficial and perverse effects of isoniazid preventive therapy for latent tuberculosis infection in HIV-tuberculosis coinfected populations

artículo científico publicado en 2006

Broad conditions favor the evolution of phase-variable loci.

artículo científico publicado en 2013

CD4+ T cells mediate antibody-independent acquired immunity to pneumococcal colonization

artículo científico publicado en 2005

Calls for caution in genome engineering should be a model for similar dialogue on pandemic pathogen research.

artículo científico publicado en 2015

Can antibiotic resistance be reduced by vaccinating against respiratory disease?

scientific article published on 31 July 2018

Can limited scientific value of potential pandemic pathogen experiments justify the risks?

artículo científico publicado en 2014

Can the Heterosexual HIV Epidemic be Eliminated in South Africa Using Combination Prevention? A Modeling Analysis

artículo científico publicado en 2016

Capsule homology does not increase the frequency of transformation of linked penicillin binding proteins PBP 1a and PBP 2x in Streptococcus pneumoniae

artículo científico publicado en 2005

Carriage burden, multiple colonization and antibiotic pressure promote emergence of resistant vaccine escape pneumococci

artículo científico publicado en 2015

Carried pneumococci in Massachusetts children: the contribution of clonal expansion and serotype switching.

artículo científico publicado en 2011

Case-based surveillance of antimicrobial resistance with full susceptibility profiles

scientific article published on 10 December 2019

Challenges of Vaccine Effectiveness and Waning Studies

scientific article published on 01 May 2019

Changes in severity of 2009 pandemic A/H1N1 influenza in England: a Bayesian evidence synthesis

artículo científico publicado en 2011

Choices in vaccine trial design in epidemics of emerging infections

scientific article published on 07 August 2018

Cholera modeling: challenges to quantitative analysis and predicting the impact of interventions

artículo científico publicado en 2012

Clonal replacement among 19A Streptococcus pneumoniae in Massachusetts, prior to 13 valent conjugate vaccination.

artículo científico publicado en 2011

Colonoscopy and Risk of Infective Endocarditis in the Elderly

artículo científico publicado en 2016

Comment on "Gain-of-Function Research and the Relevance to Clinical Practice".

artículo científico publicado en 2016

Comment on "Seroevidence for H5N1 Influenza Infections in Humans: Meta-Analysis"

scientific article published in Science

Comment on: 'Antibiotic footprint' as a communication tool to aid reduction of antibiotic consumption

artículo científico publicado en 2019

Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen

artículo científico publicado en 2013

Competing Effects Of Indirect Protection And Clustering On The Power Of Cluster-Randomized Controlled Vaccine Trials

artículo científico publicado en 2018

Competing effects of indirect protection and clustering on the power of cluster-randomized controlled vaccine trials

Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model

artículo científico publicado en 2000

Concentration-dependent selection of small phenotypic differences in TEM beta-lactamase-mediated antibiotic resistance

artículo científico publicado en 2000

Construction of otherwise isogenic serotype 6B, 7F, 14, and 19F capsular variants of Streptococcus pneumoniae strain TIGR4

artículo científico publicado en 2003

Continued impact of pneumococcal conjugate vaccine on carriage in young children.

artículo científico publicado en 2009

Control-group selection importance in studies of antimicrobial resistance: examples applied to Pseudomonas aeruginosa, Enterococci, and Escherichia coli.

artículo científico publicado en 2002

Coronavirus: sampling now for future analysis

scientific article published on 01 April 2020

Correction: Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States.

artículo científico publicado en 2010

Correction: Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States.

artículo científico publicado en 2010

Cross-reactive memory T cells and herd immunity to SARS-CoV-2

artículo científico publicado en 2020

Defining the Epidemiology of Covid-19 — Studies Needed

scholarly article by Marc Lipsitch published in 2020

Defusing a Biological Bomb

Depletion-of-susceptibles Bias in Analyses of Intra-season Waning of Influenza Vaccine Effectiveness

scientific article published on 01 March 2020

Depletion-of-susceptibles bias in influenza vaccine waning studies: how to ensure robust results

scientific article published on 27 November 2019

Development, calibration and performance of an HIV transmission model incorporating natural history and behavioral patterns: application in South Africa

artículo científico publicado en 2014

Displacement of sexual partnerships in trials of sexual behavior interventions: A model-based assessment of consequences

artículo científico publicado en 2017

Distinct effects on diversifying selection by two mechanisms of immunity against Streptococcus pneumoniae.

artículo científico publicado en 2012

Distribution of vaccine/antivirals and the 'least spread line' in a stratified population

artículo científico publicado en 2009

Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening

artículo científico publicado en 2017

Diversity and Antibiotic Resistance among Nonvaccine Serotypes ofStreptococcus pneumoniaeCarriage Isolates in the Post–Heptavalent Conjugate Vaccine Era

article

Does pneumococcal conjugate vaccine influence Staphylococcus aureus carriage in children?

artículo científico publicado en 2008

Dual roles for DNA sequence identity and the mismatch repair system in the regulation of mitotic crossing-over in yeast ⬇️

artículo científico publicado el 2 de septiembre de 1997

Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals

artículo científico publicado en 2004

Effect of Serotype on Pneumococcal Competition in a Mouse Colonization Model

artículo científico publicado en 2015

Effect of human leukocyte antigen heterozygosity on infectious disease outcome: the need for allele-specific measures

artículo científico publicado en 2003

Effects of antiviral usage on transmission dynamics of herpes simplex virus type 1 and on antiviral resistance: predictions of mathematical models

artículo científico publicado en 2000

Enhancing Situational Awareness to Prevent Infectious Disease Outbreaks from Becoming Catastrophic

artículo científico publicado en 2019

Enhancing disease surveillance with novel data streams: challenges and opportunities

artículo científico publicado en 2015

Epidemiologic data and pathogen genome sequences: a powerful synergy for public health

artículo científico publicado en 2014

Epidemiologic evidence for serotype-specific acquired immunity to pneumococcal carriage

artículo científico publicado en 2008

Epidemiology and risk factors for Staphylococcus aureus colonization in children in the post-PCV7 era

artículo científico publicado en 2009

Epidemiology of Covid-19. Reply

artículo científico publicado en 2020

Erratum for lipsitch and inglesby, moratorium on research intended to create novel potential pandemic pathogens

artículo científico publicado en 2015

Estimated Demand for US Hospital Inpatient and Intensive Care Unit Beds for Patients With COVID-19 Based on Comparisons With Wuhan and Guangzhou, China

scientific article published on 01 May 2020

Estimates of the prevalence of pandemic (H1N1) 2009, United States, April-July 2009.

artículo científico publicado en 2009

Estimating case fatality rates of COVID-19

scientific article published on 31 March 2020

Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China

artículo científico publicado en 2020

Estimating incidence curves of several infections using symptom surveillance data

artículo científico publicado en 2011

Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model

artículo científico publicado en 2012

Estimating the Prevalence of COVID-19 in the United States: Three Complementary Approaches

scientific article published on 23 April 2020

Estimating the contribution of different age strata to vaccine serotype pneumococcal transmission in the pre vaccine era: a modelling study

artículo científico publicado en 2020

Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011.

artículo científico publicado en 2015

Estimating the number of undetected COVID-19 cases exported internationally from all of China

artículo científico publicado en 2020

Estimating the per-exposure effect of infectious disease interventions

artículo científico publicado en 2014

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

article

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

scientific article published on 01 December 2018

Estimating variability in the transmission of severe acute respiratory syndrome to household contacts in Hong Kong, China

artículo científico publicado en 2007

Estimation of the reproductive number and the serial interval in early phase of the 2009 influenza A/H1N1 pandemic in the USA.

artículo científico publicado en 2009

Ethical alternatives to experiments with novel potential pandemic pathogens.

artículo científico publicado en 2014

Ethics of rationing the flu vaccine

artículo científico publicado en 2005

Evaluating treatment protocols to prevent antibiotic resistance

artículo científico publicado en 1997

Evaluation of Nowcasting for Real-Time COVID-19 Tracking - New York City, March-May 2020

scientific article published on 20 October 2020

Evolution in health and disease

artículo científico publicado en 1997

Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage

artículo científico publicado en 2017

Evolution, safety, and highly pathogenic influenza viruses

artículo científico publicado en 2012

Examining the role of different age groups, and of vaccination during the 2012 Minnesota pertussis outbreak

artículo científico publicado en 2015

Exploring the relationship between incidence and the average age of infection during seasonal epidemics

artículo científico publicado en 2009

Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination

artículo científico publicado en 2017

Factors related to increasing prevalence of resistance to ciprofloxacin and other antimicrobial drugs in Neisseria gonorrhoeae, United States

artículo científico publicado en 2012

Fractional Dosing of Yellow Fever Vaccine to Extend Supply: A Modeling Study

scholarly article published 14 May 2016

Fractional dosing of yellow fever vaccine to extend supply: a modelling study

artículo científico publicado en 2016

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

artículo científico publicado en 2020

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics.

artículo científico publicado en 2017

Gain-of-function experiments: time for a real debate

artículo científico publicado en 2014

Generation interval contraction and epidemic data analysis

artículo científico publicado en 2008

Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000-2013

artículo científico publicado en 2016

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

artículo científico publicado en 2014

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

artículo científico publicado en 2012

Geographic and temporal trends in antimicrobial nonsusceptibility in Streptococcus pneumoniae in the post-vaccine era in the United States

artículo científico publicado en 2013

Geographic diversity and temporal trends of antimicrobial resistance in Streptococcus pneumoniae in the United States

artículo científico publicado en 2003

Good science is good science: we need specialists, not sects

scientific article published on 20 June 2020

H1N1 vaccination and adults with underlying health conditions in the US.

artículo científico publicado en 2009

HOST POPULATION STRUCTURE AND THE EVOLUTION OF VIRULENCE: A "LAW OF DIMINISHING RETURNS"

scientific article published on 01 August 1995

Hedging against antiviral resistance during the next influenza pandemic using small stockpiles of an alternative chemotherapy

artículo científico publicado en 2009

Herd immunity alters the conditions for performing dose schedule comparisons: an individual-based model of pneumococcal carriage

scholarly article by Alan Yang et al published 5 March 2019 in BMC Infectious Diseases

Historical intensity of natural selection for resistance to tuberculosis

artículo científico publicado en 2002

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

artículo científico publicado en 2020

Hospitalizations Associated with Respiratory Syncytial Virus and Influenza in Children, Including Children Diagnosed with Asthma

scientific article published on 01 November 2019

Host Population Structure and the Evolution of Virulence: A "Law of Diminishing Returns"

Host population structure and treatment frequency maintain balancing selection on drug resistance

artículo científico publicado en 2017

How Can Vaccines Contribute to Solving the Antimicrobial Resistance Problem?

artículo científico publicado en 2016

How could preventive therapy affect the prevalence of drug resistance? Causes and consequences

artículo científico publicado en 2015

How generation intervals shape the relationship between growth rates and reproductive numbers

artículo científico publicado en 2007

How to maintain surveillance for novel influenza A H1N1 when there are too many cases to count

scientific article published on 11 August 2009

Human challenge studies to accelerate coronavirus vaccine licensure

scientific article published on 31 March 2020

Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity.

artículo científico publicado en 2015

Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions

artículo científico publicado en 2020

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2016

If a Global Catastrophic Biological Risk Materializes, at What Stage Will We Recognize It?

artículo científico publicado en 2017

Immunization, Antibiotic Use, and Pneumococcal Colonization Over a 15-Year Period

artículo científico publicado en 2017

Impact of Antimicrobial Treatment for Acute Otitis Media on Carriage Dynamics of Penicillin-Susceptible and Penicillin-Nonsusceptible Streptococcus pneumoniae

scientific article published in 2018

Impact of Host Heterogeneity on the Efficacy of Interventions to Reduce Staphylococcus aureus Carriage

artículo científico publicado en 2015

Impact of more than a decade of pneumococcal conjugate vaccine use on carriage and invasive potential in Native American communities ⬇️

artículo científico publicado en 2011

Impact of stochastically generated heterogeneity in hazard rates on individually randomized vaccine efficacy trials

artículo científico publicado en 2018

Impaired innate and adaptive immunity to Streptococcus pneumoniae and its effect on colonization in an infant mouse model

artículo científico publicado en 2009

Improving Control of Antibiotic-Resistant Gonorrhea by Integrating Research Agendas Across Disciplines: Key Questions Arising From Mathematical Modeling

artículo científico publicado en 2015

Improving pandemic influenza risk assessment

artículo científico publicado en 2014

Improving the estimation of influenza-related mortality over a seasonal baseline

artículo científico publicado en 2012

Improving the evidence base for decision making during a pandemic: the example of 2009 influenza A/H1N1.

artículo científico publicado en 2011

Improving vaccine trials in infectious disease emergencies

artículo científico publicado en 2017

In Vitro selection of Neisseria gonorrhoeae mutants with elevated MIC values and increased resistance to cephalosporins

artículo científico publicado en 2014

In vitro bactericidal activity of Streptococcus pneumoniae and bactericidal susceptibility of Staphylococcus aureus strains isolated from cocolonized versus noncocolonized children

artículo científico publicado en 2007

Incremental Increase in Fitness Cost with Increased β‐Lactam Resistance in Pneumococci Evaluated by Competition in an Infant Rat Nasal Colonization Model

article

Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study

scientific article published on 20 May 2020

Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo

artículo científico publicado en 2006

Infectious Diseases Society of America and Gain-of-Function Experiments With Pathogens Having Pandemic Potential

artículo científico publicado en 2015

Infectious disease epidemiology

scholarly article published 15 April 2010

Infective endocarditis and cancer in the elderly

artículo científico publicado en 2015

Inference of seasonal and pandemic influenza transmission dynamics.

artículo científico publicado en 2015

Influenza A Hemagglutinin Passage Bias Sites and Host Specificity Mutations

artículo científico publicado en 2019

Influenza seasonality: lifting the fog

scholarly article

Interaction Patterns of Men Who Have Sex With Men on a Geosocial Networking Mobile App in Seven United States Metropolitan Areas: Observational Study

artículo científico publicado en 2019

Interference between Streptococcus pneumoniae and Staphylococcus aureus: In vitro hydrogen peroxide-mediated killing by Streptococcus pneumoniae

artículo científico publicado en 2006

Interleukin-17A mediates acquired immunity to pneumococcal colonization

artículo científico publicado en 2008

Interpreting results from trials of pneumococcal conjugate vaccines: a statistical test for detecting vaccine-induced increases in carriage of nonvaccine serotypes

artículo científico publicado en 2001

Intranasal immunization with killed unencapsulated whole cells prevents colonization and invasive disease by capsulated pneumococci

artículo científico publicado en 2001

Investigate the origins of COVID-19

artículo científico publicado en 2021

Invited commentary: real-time tracking of control measures for emerging infections

artículo científico publicado en 2004

Is methicillin-resistant Staphylococcus aureus replacing methicillin-susceptible S. aureus?

artículo científico publicado en 2011

Levels of outpatient prescribing for four major antibiotic classes and rates of septicemia hospitalization in adults in different US states - a statistical analysis

scientific article published on 19 August 2019

Limited available evidence supports theoretical predictions of reduced vaccine efficacy at higher exposure dose

artículo científico publicado en 2019

Little evidence for genetic susceptibility to influenza A (H5N1) from family clustering data

artículo científico publicado en 2007

Lockdown measures and relative changes in the age-specific incidence of SARS-CoV-2 in Spain

artículo científico publicado en 2020

Lockdown measures and relative changes in the age-specific incidence of SARS-CoV-2 in Spain

artículo científico publicado en 2020

Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution

artículo científico publicado en 2020

Managing and reducing uncertainty in an emerging influenza pandemic

artículo científico publicado en 2009

Mathematical modelling for antibiotic resistance control policy: do we know enough?

scientific article published on 29 November 2019

Mathematical models of parasite responses to host immune defences ⬇️

artículo científico publicado el 1 de enero de 1997

Measurement of Vaccine Direct Effects under the Test-Negative Design

artículo científico publicado en 2018

Measuring and interpreting associations between antibiotic use and penicillin resistance in Streptococcus pneumoniae

artículo científico publicado en 2001

Mechanisms by which antibiotics promote dissemination of resistant pneumococci in human populations

artículo científico publicado en 2005

Microbiology. Bacterial population genetics and disease

artículo científico publicado en 2001

Microbiome as a tool and a target in the effort to address antimicrobial resistance

article published in the Proceedings of the National Academy of Sciences of the United States of America

Mobile messaging as surveillance tool during pandemic (H1N1) 2009, Mexico

artículo científico publicado en 2010

Model-informed COVID-19 vaccine prioritization strategies by age and serostatus

artículo científico publicado en 2020

Modeling Community- and Individual-Level Effects of Child-Care Center Attendance on Pneumococcal Carriage

article

Modeling the Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19

artículo científico publicado en 2020

Modelling seasonal variations in the age and incidence of Kawasaki disease to explore possible infectious aetiologies

artículo científico publicado en 2012

Modelling the epidemiologic impact of achieving UNAIDS fast-track 90-90-90 and 95-95-95 targets in South Africa

artículo científico publicado en 2019

Models of immune selection for multi-locus antigenic diversity of pathogens

artículo científico publicado en 2019

Monitoring the fitness of antiviral-resistant influenza strains during an epidemic: a mathematical modelling study

artículo científico publicado en 2016

Moratorium on research intended to create novel potential pandemic pathogens

artículo científico publicado en 2014

Multidrug-resistant Neisseria gonorrhoeae: implications for future treatment strategies

scientific article published on 01 June 2018

Multiple Outbreaks and Flu Containment Plans

scientific article published in Science

Multiple equilibria: tuberculosis transmission require unrealistic assumptions

artículo científico publicado en 2003

Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

scientific article published on 09 June 2013

Natural selection, infectious transfer and the existence conditions for bacterial plasmids

artículo científico publicado en 2000

Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data

artículo científico publicado en 2022

Negative controls: a tool for detecting confounding and bias in observational studies

artículo científico publicado en 2010

Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes

artículo científico publicado en 2012

No coexistence for free: neutral null models for multistrain pathogens

artículo científico publicado en 2008

Novel methods for the analysis of stepped wedge cluster randomized trials

artículo científico publicado en 2019

Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking

artículo científico publicado en 2020

Nuanced risk assessment for emerging infectious diseases

artículo científico publicado en 2014

Observational studies and the difficult quest for causality: lessons from vaccine effectiveness and impact studies

artículo científico publicado en 2016

On the Role of Different Age Groups and Pertussis Vaccines During the 2012 Outbreak in Wisconsin.

artículo científico publicado en 2018

On the evolutionary ecology of multidrug resistance in bacteria

scientific article published on 13 May 2019

On the relative role of different age groups during epidemics associated with respiratory syncytial virus

artículo científico publicado en 2017

On the relative role of different age groups in influenza epidemics

artículo científico publicado en 2015

On the role of different age groups during pertussis epidemics in California, 2010 and 2014

scientific article published on 01 January 2019

Opinion: It's ethical to test promising coronavirus vaccines against less-promising ones

artículo científico publicado en 2020

Opinion: Risk to study nonparticipants: A procedural approach

article published in the Proceedings of the National Academy of Sciences of the United States of America

Optimizing infectious disease interventions during an emerging epidemic

artículo científico publicado en 2009

Origin and proliferation of multiple-drug resistance in bacterial pathogens

artículo científico publicado en 2015

Oseltamivir Effect on Antibiotic-Treated Lower Respiratory Tract Complications in Virologically Positive Randomized Trial Participants ⬇️

artículo científico publicado el 24 de julio de 2013

Oseltamivir and Risk of Lower Respiratory Tract Complications in Patients With Flu Symptoms: A Meta-analysis of Eleven Randomized Clinical Trials ⬇️

artículo científico publicado el 15 de junio de 2011

Oseltamivir for treatment and prevention of pandemic influenza A/H1N1 virus infection in households, Milwaukee, 2009.

artículo científico publicado en 2010

Pan-serotype reduction in progression of Streptococcus pneumoniae to otitis media after rollout of pneumococcal conjugate vaccines.

artículo científico publicado en 2017

Pandemic flu: we are not prepared

scientific article published on 15 April 2005

Pandemic influenza: risk of multiple introductions and the need to prepare for them. ⬇️

artículo científico publicado en 2006

Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination

article

Pathogen diversity and hidden regimes of apparent competition

artículo científico publicado en 2012

Patient sharing and population genetic structure of methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2012

Patterns of antigenic diversity and the mechanisms that maintain them

artículo científico publicado en 2007

Pneumococcal capsular polysaccharide structure predicts serotype prevalence

artículo científico publicado en 2009

Pneumococcal carriage and antibiotic resistance in young children before 13-valent conjugate vaccine

artículo científico publicado en 2012

Pneumococcal sequence type replacement among American Indian children: A comparison of pre- and routine-PCV7 eras

artículo científico publicado en 2012

Population Biology, Evolution, and Infectious Disease: Convergence and Synthesis

artículo científico publicado en 1999

Population dynamics of tuberculosis treatment: mathematical models of the roles of non-compliance and bacterial heterogeneity in the evolution of drug resistance

artículo científico publicado el 1 de marzo de 1998

Population effect of influenza vaccination under co-circulation of non-vaccine variants and the case for a bivalent A/H3N2 vaccine component

artículo científico publicado en 2017

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

artículo científico publicado en 2015

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

Population genomics of pneumococcal carriage in Massachusetts children following introduction of PCV-13

artículo científico publicado en 2019

Population genomics of post-vaccine changes in pneumococcal epidemiology.

artículo científico publicado en 2013

Population impact of SARS-CoV-2 variants with enhanced transmissibility and/or partial immune escape

artículo científico publicado en 2021

Postexposure Effects of Vaccines on Infectious Diseases

artículo científico publicado en 2019

Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks

artículo científico publicado en 2015

Potential benefits of a serodiagnostic test for herpes simplex virus type 1 (HSV-1) to prevent neonatal HSV-1 infection

artículo científico publicado en 2002

Potential biases arising from epidemic dynamics in observational seroprotection studies

artículo científico publicado en 2020

Potential impact of outpatient stewardship interventions on antibiotic exposures of common bacterial pathogens

artículo científico publicado en 2020

Practical considerations for measuring the effective reproductive number, Rt

artículo científico publicado en 2020

Practical considerations for measuring the effective reproductive number, Rt

scientific article published on 10 December 2020

Pre-dispensing of antivirals to high-risk individuals in an influenza pandemic.

artículo científico publicado en 2010

Predicting the epidemic sizes of influenza A/H1N1, A/H3N2, and B: a statistical method

artículo científico publicado en 2011

Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

article

Prediction of serotypes causing invasive pneumococcal disease in unvaccinated and vaccinated populations

artículo científico publicado en 2011

Predictors of indoor absolute humidity and estimated effects on influenza virus survival in grade schools

artículo científico publicado en 2013

Predispensing of antivirals to high-risk individuals in an influenza pandemic

artículo científico publicado en 2009

Preprints: An underutilized mechanism to accelerate outbreak science ⬇️

artículo científico publicado en 2018

Projected benefits of active surveillance for vancomycin-resistant enterococci in intensive care units

artículo científico publicado en 2004

Projecting the transmission dynamics of SARS-CoV-2 through the post-pandemic period

artículo científico publicado en 2020

Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period

scientific article published on 14 April 2020

Projection of the future dimensions and costs of the genital herpes simplex type 2 epidemic in the United States

artículo científico publicado en 2002

Proposed Changes to U.S. Policy on Potential Pandemic Pathogen Oversight and Implementation

artículo científico publicado en 2020

Protection against nasopharyngeal colonization by Streptococcus pneumoniae is mediated by antigen-specific CD4+ T cells.

artículo científico publicado en 2008

Public health interventions and epidemic intensity during the 1918 influenza pandemic

artículo científico publicado en 2007

Quantifying bias of COVID-19 prevalence and severity estimates in Wuhan, China that depend on reported cases in international travelers

artículo científico publicado en 2020

Quantifying child mortality reductions related to measles vaccination

artículo científico publicado en 2010

Quantifying interhospital patient sharing as a mechanism for infectious disease spread

artículo científico publicado en 2010

Rates of acquisition and clearance of pneumococcal serotypes in the nasopharynges of children in Kilifi District, Kenya

artículo científico publicado en 2012

Re-emergence of the type 1 pilus among Streptococcus pneumoniae isolates in Massachusetts, USA.

artículo científico publicado en 2010

Real-time influenza forecasts during the 2012-2013 season

artículo científico publicado en 2013

Recognition of pneumolysin by Toll-like receptor 4 confers resistance to pneumococcal infection

artículo científico publicado en 2003

Reconstructing influenza incidence by deconvolution of daily mortality time series

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Regulating impact on bystanders in clinical trials: An unsettled frontier

artículo científico publicado en 2019

Reopening Primary Schools during the Pandemic

artículo científico publicado en 2020

Reply to "Studies on influenza virus transmission between ferrets: the public health risks revisited".

artículo científico publicado en 2015

Reply to Allan-Blitz and Klausner

artículo científico publicado en 2016

Reply to Cochrane Neuraminidase Inhibitors Review Team

artículo científico publicado en 2011

Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany

artículo científico publicado en 2012

Reply to Hasford and to Spinola et al

artículo científico publicado en 2020

Reply to ‘Declining adherence as a more likely explanation than frailty of the apparent decline in efficacy in the CAPRISA 004 trial’

Reproductive numbers, epidemic spread and control in a community of households.

artículo científico publicado en 2009

Resistance diagnostics as a public health tool to combat antibiotic resistance: A model-based evaluation.

artículo científico publicado en 2019

Resistance to antimicrobial chemotherapy: a prescription for research and action

artículo científico publicado en 1998

Response to Cioffi

artículo científico publicado en 2020

Response to Dawson et al

artículo científico publicado en 2020

Response to comment on 'The distribution of antibiotic use and its association with antibiotic resistance'

scientific article published on 03 May 2019

Rethinking biosafety in research on potential pandemic pathogens

artículo científico publicado en 2012

Risk of clinical sequelae after the acute phase of SARS-CoV-2 infection: retrospective cohort study

artículo científico publicado en 2021

Risk of persistent and new clinical sequelae among adults aged 65 years and older during the post-acute phase of SARS-CoV-2 infection: retrospective cohort study

artículo científico publicado en 2022

Searching for sharp drops in the incidence of pandemic A/H1N1 influenza by single year of age

artículo científico publicado en 2012

Seasonality of antibiotic-resistant streptococcus pneumoniae that causes acute otitis media: a clue for an antibiotic-restriction policy?

artículo científico publicado en 2008

Secular trends in Helicobacter pylori seroprevalence in adults in the United States: evidence for sustained race/ethnic disparities

artículo científico publicado en 2011

Selective and genetic constraints on pneumococcal serotype switching

artículo científico publicado en 2015

Sequence tag-based analysis of microbial population dynamics

artículo científico publicado en 2015

Serotype replacement in disease after pneumococcal vaccination

artículo científico publicado en 2011

Serotype specific invasive capacity and persistent reduction in invasive pneumococcal disease

artículo científico publicado en 2010

Serotype-specific immune responses to pneumococcal conjugate vaccine among children are significantly correlated by individual: Analysis of randomized controlled trial data

artículo científico publicado en 2017

Serum antipneumococcal antibodies and pneumococcal colonization in adults with chronic obstructive pulmonary disease

artículo científico publicado en 2007

Serum serotype-specific pneumococcal anticapsular immunoglobulin g concentrations after immunization with a 9-valent conjugate pneumococcal vaccine correlate with nasopharyngeal acquisition of pneumococcus

artículo científico publicado en 2005

Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data

artículo científico publicado en 2017

Shortcomings of vitamin D-based model simulations of seasonal influenza

artículo científico publicado en 2011

Simulations for Designing and Interpreting Intervention Trials in Infectious Diseases

Simulations for designing and interpreting intervention trials in infectious diseases

artículo científico publicado en 2017

Single-step capsular transformation and acquisition of penicillin resistance in Streptococcus pneumoniae

artículo científico publicado en 2004

Social distancing strategies for curbing the COVID-19 epidemic

artículo científico publicado en 2020

SpxB is a suicide gene of Streptococcus pneumoniae and confers a selective advantage in an in vivo competitive colonization model

artículo científico publicado en 2007

Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced

artículo científico publicado en 2015

Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks

artículo científico publicado en 2020

Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks

scientific article published on 10 July 2020

Strain characteristics of Streptococcus pneumoniae carriage and invasive disease isolates during a cluster-randomized clinical trial of the 7-valent pneumococcal conjugate vaccine

artículo científico publicado en 2007

Streptococcus pneumoniae capsular serotype invasiveness correlates with the degree of factor H binding and opsonization with C3b/iC3b ⬇️

artículo científico publicado en 2012

Student behavior during a school closure caused by pandemic influenza A/H1N1

artículo científico publicado en 2010

Studies needed to address public health challenges of the 2009 H1N1 influenza pandemic: insights from modeling

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Surface charge of Streptococcus pneumoniae predicts serotype distribution.

artículo científico publicado en 2013

Surveillance to maintain the sensitivity of genotype-based antibiotic resistance diagnostics

scientific article published on 12 November 2019

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses

artículo científico publicado en 2016

THE AUTHORS REPLY

artículo científico publicado en 2019

THE EVOLUTION OF VIRULENCE IN PATHOGENS WITH VERTICAL AND HORIZONTAL TRANSMISSION.

artículo científico publicado en 1996

TRANSMISSION RATES AND HIV VIRULENCE: COMMENTS TO MASSAD.

artículo científico publicado en 1997

Targeted surveillance strategies for efficient detection of novel antibiotic resistance variants

scientific article published on 30 June 2020

Targeting imperfect vaccines against drug-resistance determinants: a strategy for countering the rise of drug resistance

artículo científico publicado en 2013

Temporal rise in the proportion of both younger adults and older adolescents among COVID-19 cases in Germany: evidence of lesser adherence to social distancing practices?

artículo científico publicado en 2020

Temporal rise in the proportion of younger adults and older adolescents among coronavirus disease (COVID-19) cases following the introduction of physical distancing measures, Germany, March to April 2020

scientific article published on 01 April 2020

Temporally Varying Relative Risks for Infectious Diseases: Implications for Infectious Disease Control

artículo científico publicado en 2017

Testing COVID-19 therapies to prevent progression of mild disease

artículo científico publicado en 2020

The Authors Respond

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The Effect of Parasites on Host Population Density and Extinction: Experimental Epidemiology with Daphnia and Six Microparasites

artículo científico publicado en 2000

The El Nino-Southern Oscillation (ENSO)-pandemic influenza connection: coincident or causal?

artículo científico publicado en 2012

The Population Genetics of Antibiotic Resistance II: Analytic Theory for Sustained Populations of Bacteria in a Community of Hosts ⬇️

artículo científico publicado el 1 de abril de 1998

The Relative Impact of Community and Hospital Antibiotic Use on the Selection of Extended-spectrum Beta-lactamase-producing Escherichia coli

artículo científico publicado en 2019

The US 2009 A(H1N1) influenza epidemic: quantifying the impact of school openings on the reproductive number.

artículo científico publicado en 2014

The Use of Test-negative Controls to Monitor Vaccine Effectiveness: A Systematic Review of Methodology

artículo científico publicado en 2020

The analysis of hospital infection data using hidden Markov models

artículo científico publicado en 2004

The association of meningococcal disease with influenza in the United States, 1989-2009.

artículo científico publicado en 2014

The demand for inpatient and ICU beds for COVID-19 in the US: lessons from Chinese cities

artículo científico publicado en 2020

The distribution of antibiotic use and its association with antibiotic resistance

scholarly article published 19 November 2018

The distribution of antibiotic use and its association with antibiotic resistance

scholarly article by Scott W. Olesen et al published 18 December 2018 in eLife

The distribution of pairwise genetic distances: a tool for investigating disease transmission

artículo científico publicado en 2014

The effect of antiretroviral therapy on secondary transmission of HIV among men who have sex with men

artículo científico publicado en 2007

The epidemiology of antibiotic resistance in hospitals: paradoxes and prescriptions

artículo científico publicado en 2000

The ethics of biosafety considerations in gain-of-function research resulting in the creation of potential pandemic pathogens.

artículo científico publicado en 2015

The evolution of antibiotic resistance in a structured host population

scholarly article by François Blanquart et al published June 2018 in Journal of the Royal Society Interface

The evolution of virulence in sexually transmitted HIV/AIDS.

artículo científico publicado en 1995

The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome.

artículo científico publicado en 2018

The influence of hitchhiking and deleterious mutation upon asexual mutation rates

artículo científico publicado en 2006

The pneumococcal pilus predicts the absence of Staphylococcus aureus co-colonization in pneumococcal carriers

artículo científico publicado en 2009

The population dynamics of antimicrobial chemotherapy.

artículo científico publicado en 1997

The population dynamics of vertically and horizontally transmitted parasites

artículo científico publicado en 1995

The population genetics of antibiotic resistance

artículo científico publicado en 1997

The prevalence and risk factors for pneumococcal colonization of the nasopharynx among children in Kilifi District, Kenya

artículo científico publicado en 2012

The relation between prescribing of different antibiotics and rates of mortality with sepsis in US adults

artículo científico publicado en 2020

The rise and fall of antimicrobial resistance

artículo científico publicado en 2001

The role of absolute humidity on transmission rates of the COVID-19 outbreak

artículo científico publicado en 2020

The role of complement in innate and adaptive immunity to pneumococcal colonization and sepsis in a murine model

artículo científico publicado en 2009

The severity of pandemic H1N1 influenza in the United States, April - July 2009

artículo científico publicado en 2009

The severity of pandemic H1N1 influenza in the United States, from April to July 2009: a Bayesian analysis

artículo científico publicado en 2009

The within-host population dynamics of antibacterial chemotherapy: conditions for the evolution of resistance.

artículo científico publicado en 1997

Time from illness onset to death, 1918 influenza and pneumococcal pneumonia

artículo científico publicado en 2009

Too little of a good thing: a paradox of moderate infection control

artículo científico publicado en 2008

Toward economic evaluation of the value of vaccines and other health technologies in addressing AMR

article published in the Proceedings of the National Academy of Sciences of the United States of America

Transmissibility of 1918 pandemic influenza

artículo científico publicado en 2004

Transmission dynamics and control of severe acute respiratory syndrome

artículo científico publicado en 2003

Trends in outpatient antibiotic prescribing practice among US older adults, 2011-2015: an observational study

Trends in outpatient antibiotic use and prescribing practice among US older adults, 2011-15: observational study

scientific article published on 27 July 2018

Underprotection of Unpredictable Statistical Lives Compared to Predictable Ones

artículo científico publicado en 2016

Understanding Australia's influenza pandemic policy on the strategic use of the antiviral drug stockpile.

artículo científico publicado en 2009

Understanding the spread of antibiotic resistant pathogens in hospitals: mathematical models as tools for control

artículo científico publicado en 2001

Upgrading antibiotic use within a class: tradeoff between resistance and treatment success

artículo científico publicado en 2006

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine

scholarly article by Francisco Y. Cai published in October 2018

Use of cumulative incidence of novel influenza A/H1N1 in foreign travelers to estimate lower bounds on cumulative incidence in Mexico

artículo científico publicado en 2009

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

artículo científico publicado en 2011

Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli

scientific article published on 09 March 2020

Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China

scientific article published on 01 April 2020

Using pneumococcal carriage data to monitor postvaccination changes in invasive disease

artículo científico publicado en 2013

Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases

artículo científico publicado en 2020

Using simulation to aid trial design: Ring-vaccination trials

artículo científico publicado en 2017

Using simulation to aid trial design: ring-vaccination trials

Utilizing syndromic surveillance data for estimating levels of influenza circulation

artículo científico publicado en 2014

Vaccination against colonizing bacteria with multiple serotypes

artículo científico publicado en 1997

Vaccine Effects on Heterogeneity in Susceptibility and Implications for Population Health Management.

artículo científico publicado en 2017

Vaccine allocation in a declining epidemic

artículo científico publicado en 2012

Vaccine production, distribution, access, and uptake

artículo científico publicado en 2011

Vaccine testing for emerging infections: the case for individual randomisation

artículo científico publicado en 2017

Vaccine testing. Ebola and beyond

artículo científico publicado en 2015

Viral factors in influenza pandemic risk assessment.

artículo científico publicado en 2016

Viral shedding and clinical illness in naturally acquired influenza virus infections

artículo científico publicado en 2010

Virulence and transmissibility of pathogens: what is the relationship?

artículo científico publicado en 1997

Visualizing pneumococcal infections in the lungs of live mice using bioluminescent Streptococcus pneumoniae transformed with a novel gram-positive lux transposon

artículo científico publicado en 2001

Weak Epistasis May Drive Adaptation in Recombining Bacteria

artículo científico publicado en 2018

Weather-based prediction of Plasmodium falciparum malaria in epidemic-prone regions of Ethiopia I. Patterns of lagged weather effects reflect biological mechanisms

artículo científico publicado en 2004

Weather-based prediction of Plasmodium falciparum malaria in epidemic-prone regions of Ethiopia II. Weather-based prediction systems perform comparably to early detection systems in identifying times for interventions

artículo científico publicado en 2004

What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?

artículo científico publicado en 2009

Why Do Exceptionally Dangerous Gain-of-Function Experiments in Influenza?

artículo científico publicado en 2018

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data

artículo científico publicado en 2014

Within-host selection is limited by an effective population of Streptococcus pneumoniae during nasopharyngeal colonization

scientific article published on 30 September 2013

Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence of immune pressure

artículo científico publicado en 2014

Zika vaccine trials

artículo científico publicado en 2016

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