Lista de obras - Katsuhiko Shirahige - Dominio Público Uruguay

5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex

scientific journal article

A checkpoint control linking meiotic S phase and recombination initiation in fission yeast

artículo científico publicado en 2005

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands

artículo científico publicado en 2010

A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants

artículo científico publicado en 2013

A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion

artículo científico publicado en 2011

A wave of nascent transcription on activated human genes

scholarly article

ARCN1 Mutations Cause a Recognizable Craniofacial Syndrome Due to COPI-Mediated Transport Defects

artículo científico publicado en 2016

ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells

artículo científico publicado en 2016

ATF1 modulates the heat shock response by regulating the stress-inducible heat shock factor 1 transcription complex

artículo científico publicado en 2014

Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast

artículo científico publicado en 2006

Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast

artículo científico publicado en 2011

Amyloid precursor protein is a primary androgen target gene that promotes prostate cancer growth

artículo científico publicado en 2009

An In Vitro Human Liver Model by iPSC-Derived Parenchymal and Non-parenchymal Cells ⬇️

artículo científico publicado en 2017

An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion

artículo científico

An integrated map of p53-binding sites and histone modification in the human ENCODE regions

artículo científico publicado en 2006

Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

artículo científico publicado en 2009

Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae

artículo científico publicado en 2007

BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability

artículo científico publicado en 2014

Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast ⬇️

artículo científico publicado en 2008

Both interaction surfaces within cohesin's hinge domain are essential for its stable chromosomal association

artículo científico publicado en 2010

Budding yeast Wpl1(Rad61)-Pds5 complex counteracts sister chromatid cohesion-establishing reaction

artículo científico publicado en 2009

ChIP-on-chip analysis of DNA topoisomerases

artículo científico publicado en 2009

Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion

artículo científico publicado en 2016

Chromatin immunoprecipitation protocol for mammalian cells

artículo científico publicado en 2014

Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways

artículo científico publicado en 2006

Chromosome length influences replication-induced topological stress

artículo científico publicado en 2011

Clinical, developmental and molecular update on Cornelia de Lange syndrome and the cohesin complex: abstracts from the 2014 Scientific and Educational Symposium

artículo científico publicado en 2015

Cohesin Acetylation Promotes Sister Chromatid Cohesion Only in Association with the Replication Machinery ⬇️

artículo científico publicado el 15 de agosto de 2012

Cohesin relocation from sites of chromosomal loading to places of convergent transcription

artículo científico publicado en 2004

Combined Loss of JMJD1A and JMJD1B Reveals Critical Roles for H3K9 Demethylation in the Maintenance of Embryonic Stem Cells and Early Embryogenesis

artículo científico publicado en 2018

Condensin-dependent rDNA decatenation introduces a temporal pattern to chromosome segregation

artículo científico publicado en 2008

Cornelia de Lange syndrome and molecular implications of the cohesin complex: Abstracts from the 7th biennial scientific and educational symposium 2016.

artículo científico publicado en 2017

Cornelia de Lange syndrome: further delineation of phenotype, cohesin biology and educational focus, 5th Biennial Scientific and Educational Symposium abstracts

artículo científico publicado en 2014

Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks

artículo científico publicado en 2009

Ctf4 coordinates the progression of helicase and DNA polymerase alpha

artículo científico publicado en 2009

DBTMEE: a database of transcriptome in mouse early embryos

artículo científico publicado en 2014

DBTSS/DBKERO for integrated analysis of transcriptional regulation

artículo científico publicado en 2017

DROMPA: easy‐to‐handle peak calling and visualization software for the computational analysis and validation of ChIP‐seq data ⬇️

artículo científico publicado el 15 de mayo de 2013

Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior

artículo científico publicado en 2017

Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks

artículo científico publicado en 2006

Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis

artículo científico publicado en 2014

Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting

artículo científico publicado en 2007

Dissecting the first and the second meiotic divisions using a marker-less drug-hypersensitive fission yeast.

artículo científico publicado en 2014

During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks

artículo científico publicado en 2012

Elevation of insulin-like growth factor binding protein-2 level in Pallister-Killian syndrome: implications for the postnatal growth retardation phenotype

artículo científico publicado en 2015

Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype

artículo científico publicado en 2012

Establishment of sister chromatid cohesion at the S. cerevisiae replication fork

artículo científico publicado en 2006

Eukaryotic replisome components cooperate to process histones during chromosome replication.

artículo científico publicado en 2013

Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge

article

Exome Sequencing Identification of EP300 Mutation in a Proband with Coloboma and Imperforate Anus: Possible Expansion of the Phenotypic Spectrum of Rubinstein-Taybi Syndrome

artículo científico publicado en 2015

Exome sequencing-based identification of mutations in non-syndromic genes among individuals with apparently syndromic features

artículo científico publicado en 2016

Genome-Wide Target Analyses of Otx2 Homeoprotein in Postnatal Cortex

artículo científico publicado en 2017

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

artículo científico publicado en 2010

Genome-wide analysis of murine renal distal convoluted tubular cells for the target genes of mineralocorticoid receptor

artículo científico

Genome-wide expression analysis of genes affected by amino acid sensor Ssy1p in Saccharomyces cerevisiae

artículo científico publicado en 2002

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles

artículo científico

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters

artículo científico publicado en 2009

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

artículo científico publicado en 2007

Genomic approach for the understanding of dynamic aspect of chromosome behavior

artículo científico publicado en 2006

Glucose-dependent cell size is regulated by a G protein-coupled receptor system in yeast Saccharomyces cerevisiae

artículo científico publicado en 2005

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

artículo científico publicado en 2012

Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis

artículo científico publicado en 2011

Hot debate in hot springs: Report on the second international meeting on SMC proteins

artículo científico publicado en 2017

Identification and characterization of rns4/vps32 mutation in the RNase T1 expression-sensitive strain of Saccharomyces cerevisiae: Evidence for altered ambient response resulting in transportation of the secretory protein to vacuoles

artículo científico publicado en 2005

Identification of a variant-specific phosphorylation of TH2A during spermiogenesis

artículo científico publicado en 2017

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

artículo científico publicado en 2008

Importance of Polη for damage-induced cohesion reveals differential regulation of cohesion establishment at the break site and genome-wide ⬇️

artículo científico publicado en 2013

Inactivation of SMC2 shows a synergistic lethal response in MYCN-amplified neuroblastoma cells

artículo científico publicado en 2014

Involvement of RAD9-dependent damage checkpoint control in arrest of cell cycle, induction of cell death, and chromosome instability caused by defects in origin recognition complex in Saccharomyces cerevisiae

artículo científico publicado en 2002

Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

artículo científico publicado en 2013

Loss-of-function HDAC8 mutations cause a phenotypic spectrum of Cornelia de Lange syndrome-like features, ocular hypertelorism, large fontanelle and X-linked inheritance

artículo científico publicado en 2014

Mapping of histone-binding sites in histone replacement-completed spermatozoa

artículo científico publicado en 2018

Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast

artículo científico publicado en 2006

Meiotic recombination-related DNA synthesis and its implications for cross-over and non-cross-over recombinant formation

artículo científico publicado en 2007

Monopolar attachment of sister kinetochores at meiosis I requires casein kinase 1.

artículo científico publicado en 2006

Mosaic ratio quantification of isochromosome 12p in Pallister-Killian syndrome using droplet digital PCR.

artículo científico publicado en 2016

Mrc1 and DNA polymerase epsilon function together in linking DNA replication and the S phase checkpoint

artículo científico publicado en 2008

Mre11 mediates gene regulation in yeast spore development

artículo científico publicado en 2007

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast

artículo científico publicado en 2008

Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing

artículo científico publicado en 2011

PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine

artículo científico publicado en 2013

PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells

artículo científico publicado en 2013

Pds5 promotes and protects cohesin acetylation

artículo científico publicado en 2013

Postreplicative Formation of Cohesion Is Required for Repair and Induced by a Single DNA Break

artículo científico publicado en 2007

Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I.

artículo científico publicado en 2006

Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells

artículo científico publicado en 2015

RSC Nucleosome-remodeling complex plays prominent roles in transcriptional regulation throughout budding yeast gametogenesis

artículo científico publicado en 2004

Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe

artículo científico publicado en 2008

Rapid Discovery of Highly Potent and Selective Inhibitors of Histone Deacetylase 8 Using Click Chemistry to Generate Candidate Libraries ⬇️

artículo científico publicado el 12 de noviembre de 2012

Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes

scientific article published on 13 May 2009

Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest

artículo científico publicado en 2010

Reciprocal association of the budding yeast ATM-related proteins Tel1 and Mec1 with telomeres in vivo

artículo científico publicado en 2004

Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms

artículo científico publicado en 2013

Relationship between G+C content, ORF-length and mRNA concentration in Saccharomyces cerevisiae

artículo científico publicado en 2003

Replication termination at eukaryotic chromosomes is mediated by Top2 and occurs at genomic loci containing pausing elements

artículo científico publicado en 2010

Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases

artículo científico publicado en 2012

Rif1 is a global regulator of timing of replication origin firing in fission yeast

artículo científico publicado en 2012

Rtt101-Mms1-Mms22 coordinates replication-coupled sister chromatid cohesion and nucleosome assembly

artículo científico publicado en 2017

Rtt107 is required for recruitment of the SMC5/6 complex to DNA double strand breaks

artículo científico publicado en 2011

S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex

artículo científico publicado en 2003

SCF(Dia2) regulates DNA replication forks during S-phase in budding yeast

artículo científico publicado en 2009

Screening for candidate genes involved in tolerance to organic solvents in yeast

artículo científico publicado en 2006

Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile

artículo científico publicado en 2018

Sensory-neuron subtype-specific transcriptional programs controlling dendrite morphogenesis: genome-wide analysis of Abrupt and Knot/Collier

artículo científico publicado en 2013

Single cell RNA-sequencing identified Dec2 as a suppressive factor for spermatogonial differentiation by inhibiting Sohlh1 expression

Sororin mediates sister chromatid cohesion by antagonizing Wapl

artículo científico publicado en 2010

Sphingolipids regulate telomere clustering by affecting the transcription of genes involved in telomere homeostasis

artículo científico publicado en 2015

Spo13 facilitates monopolin recruitment to kinetochores and regulates maintenance of centromeric cohesion during yeast meiosis

artículo científico publicado en 2004

Statistical Analysis and Quality Assessment of ChIP-seq Data with DROMPA.

artículo científico publicado en 2018

Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast

artículo científico publicado en 2012

Temporal and spatial regulation of eukaryotic DNA replication: from regulated initiation to genome-scale timing program

artículo científico publicado en 2014

The direct binding of Mrc1, a checkpoint mediator, to Mcm6, a replication helicase, is essential for the replication checkpoint against methyl methanesulfonate-induced stress

artículo científico publicado en 2009

The inheritance of histone modifications depends upon the location in the chromosome in Saccharomyces cerevisiae

artículo científico publicado en 2011

The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation

artículo científico publicado en 2007

The prereplication complex recruits XEco2 to chromatin to promote cohesin acetylation in Xenopus egg extracts

artículo científico publicado en 2012

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

artículo científico publicado en 2009

Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation

artículo científico publicado en 2007

Transcriptional dysregulation in NIPBL and cohesin mutant human cells

artículo científico publicado en 2009

Unique gene expression profile of the proliferating Xenopus tadpole tail blastema cells deciphered by RNA-sequencing analysis

artículo científico publicado en 2015

Yeast Pho85 kinase is required for proper gene expression during the diauxic shift

artículo científico publicado en 2004

Lista de obras de Katsuhiko Shirahige

5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex

A checkpoint control linking meiotic S phase and recombination initiation in fission yeast

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands

A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants

A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion

A wave of nascent transcription on activated human genes

ARCN1 Mutations Cause a Recognizable Craniofacial Syndrome Due to COPI-Mediated Transport Defects

ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells

ATF1 modulates the heat shock response by regulating the stress-inducible heat shock factor 1 transcription complex

Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast

Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast

Amyloid precursor protein is a primary androgen target gene that promotes prostate cancer growth

An In Vitro Human Liver Model by iPSC-Derived Parenchymal and Non-parenchymal Cells ⬇️

An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion

An integrated map of p53-binding sites and histone modification in the human ENCODE regions

Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae

BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability

Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast ⬇️

Both interaction surfaces within cohesin's hinge domain are essential for its stable chromosomal association

Budding yeast Wpl1(Rad61)-Pds5 complex counteracts sister chromatid cohesion-establishing reaction

ChIP-on-chip analysis of DNA topoisomerases

Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion

Chromatin immunoprecipitation protocol for mammalian cells

Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways

Chromosome length influences replication-induced topological stress

Clinical, developmental and molecular update on Cornelia de Lange syndrome and the cohesin complex: abstracts from the 2014 Scientific and Educational Symposium

Cohesin Acetylation Promotes Sister Chromatid Cohesion Only in Association with the Replication Machinery ⬇️

Cohesin relocation from sites of chromosomal loading to places of convergent transcription

Combined Loss of JMJD1A and JMJD1B Reveals Critical Roles for H3K9 Demethylation in the Maintenance of Embryonic Stem Cells and Early Embryogenesis

Condensin-dependent rDNA decatenation introduces a temporal pattern to chromosome segregation

Cornelia de Lange syndrome and molecular implications of the cohesin complex: Abstracts from the 7th biennial scientific and educational symposium 2016.

Cornelia de Lange syndrome: further delineation of phenotype, cohesin biology and educational focus, 5th Biennial Scientific and Educational Symposium abstracts

Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks

Ctf4 coordinates the progression of helicase and DNA polymerase alpha

DBTMEE: a database of transcriptome in mouse early embryos

DBTSS/DBKERO for integrated analysis of transcriptional regulation

DROMPA: easy‐to‐handle peak calling and visualization software for the computational analysis and validation of ChIP‐seq data ⬇️

Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior

Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks

Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis

Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting

Dissecting the first and the second meiotic divisions using a marker-less drug-hypersensitive fission yeast.

During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks

Elevation of insulin-like growth factor binding protein-2 level in Pallister-Killian syndrome: implications for the postnatal growth retardation phenotype

Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype

Establishment of sister chromatid cohesion at the S. cerevisiae replication fork

Eukaryotic replisome components cooperate to process histones during chromosome replication.

Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge

Exome Sequencing Identification of EP300 Mutation in a Proband with Coloboma and Imperforate Anus: Possible Expansion of the Phenotypic Spectrum of Rubinstein-Taybi Syndrome

Exome sequencing-based identification of mutations in non-syndromic genes among individuals with apparently syndromic features

Genome-Wide Target Analyses of Otx2 Homeoprotein in Postnatal Cortex

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

Genome-wide analysis of murine renal distal convoluted tubular cells for the target genes of mineralocorticoid receptor

Genome-wide expression analysis of genes affected by amino acid sensor Ssy1p in Saccharomyces cerevisiae

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast

Genomic approach for the understanding of dynamic aspect of chromosome behavior

Glucose-dependent cell size is regulated by a G protein-coupled receptor system in yeast Saccharomyces cerevisiae

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis

Hot debate in hot springs: Report on the second international meeting on SMC proteins

Identification and characterization of rns4/vps32 mutation in the RNase T1 expression-sensitive strain of Saccharomyces cerevisiae: Evidence for altered ambient response resulting in transportation of the secretory protein to vacuoles

Identification of a variant-specific phosphorylation of TH2A during spermiogenesis

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

Importance of Polη for damage-induced cohesion reveals differential regulation of cohesion establishment at the break site and genome-wide ⬇️

Inactivation of SMC2 shows a synergistic lethal response in MYCN-amplified neuroblastoma cells

Involvement of RAD9-dependent damage checkpoint control in arrest of cell cycle, induction of cell death, and chromosome instability caused by defects in origin recognition complex in Saccharomyces cerevisiae

Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

Loss-of-function HDAC8 mutations cause a phenotypic spectrum of Cornelia de Lange syndrome-like features, ocular hypertelorism, large fontanelle and X-linked inheritance

Mapping of histone-binding sites in histone replacement-completed spermatozoa

Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast

Meiotic recombination-related DNA synthesis and its implications for cross-over and non-cross-over recombinant formation

Monopolar attachment of sister kinetochores at meiosis I requires casein kinase 1.

Mosaic ratio quantification of isochromosome 12p in Pallister-Killian syndrome using droplet digital PCR.

Mrc1 and DNA polymerase epsilon function together in linking DNA replication and the S phase checkpoint

Mre11 mediates gene regulation in yeast spore development

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast