Lista de obras - Martina Summer-Kutmon - Dominio Público Uruguay

A bioinformatics workflow to decipher transcriptomic data from vitamin D studies

scientific article published on 01 February 2019

A network biology workflow to study transcriptomics data of the diabetic liver

artículo científico publicado en 2014

A pathway approach to investigate the function and regulation of SREBPs

artículo científico publicado en 2013

A protocol for adding knowledge to Wikidata, a case report

scientific article published on 07 April 2020

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses ⬇️

artículo científico publicado en 2021

Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue

artículo científico publicado en 2021

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

artículo científico publicado en 2023

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

artículo científico publicado en 2019

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus-A Co-expression Network Based Analysis

BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb)

artículo científico publicado en 2022

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

artículo científico

Comparison of metabolic states using genome-scale metabolic models

artículo científico publicado en 2021

Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open-angle glaucoma

scientific article published on 14 June 2019

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

artículo científico publicado en 2018

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis

artículo científico publicado en 2013

Discovering life's directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool

artículo científico publicado en 2024

EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models

artículo científico publicado en 2020

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

scholarly article published in Nature Biotechnology

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Exploring the cellular network of metabolic flexibility in the adipose tissue.

artículo científico publicado en 2018

From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results

artículo científico publicado en 2018

Glycolysis and Gluconeogenesis

metabolic pathway (mus musculus)

Guiding the choice of informatics software and tools for lipidomics research applications

artículo científico publicado en 2022

History of rare diseases and their genetic causes - a data driven approach

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

artículo científico publicado en 2019

Inferring causal molecular networks: empirical assessment through a community-based effort

artículo científico publicado en 2016

Integrated visualization of a multi-omics study of starvation in mouse intestine

artículo científico

Integrated visualization of a multi-omics study of starvation in mouse intestine

artículo científico publicado en 2014

Integrative multiomics analysis of human atherosclerosis reveals a serum response factor-driven network associated with intraplaque hemorrhage

artículo científico publicado en 2021

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells

artículo científico publicado en 2015

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts

artículo científico publicado en 2021

Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

artículo científico publicado en 2019

Managing biological data in pathways and networks ⬇️

doctoral thesis

PathVisio 3: an extendable pathway analysis toolbox

artículo científico publicado en 2015

Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D.

artículo científico publicado en 2017

Pathway information extracted from 25 years of pathway figures

artículo científico publicado en 2020

Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression

article

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services

Reactome from a WikiPathways Perspective

artículo científico publicado en 2016

Sexual Dimorphism, Age, and Fat Mass Are Key Phenotypic Drivers of Proteomic Signatures

artículo científico publicado en 2017

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation

artículo científico publicado en 2020

Systems Biology in ELIXIR: modelling in the spotlight

artículo científico publicado en 2024

TCA Cycle

metabolic pathway (mus musculus)

Ten simple rules for creating reusable pathway models for computational analysis and visualization

artículo científico

The BioPAX community standard for pathway data sharing

artículo científico publicado en 2010

The Importance of Modularity in Bioinformatics Tools

The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension

scientific article published on 01 April 2020

The systems biology format converter

artículo científico publicado en 2016

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

artículo científico publicado en 2022

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

artículo científico publicado en 2016

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways

artículo científico publicado en 2017

WikiPathways 2024: next generation pathway database

artículo científico publicado en 2023

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

artículo científico publicado en 2014

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

artículo científico publicado en 2014

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

artículo científico publicado en 2017

WikiPathways: building research communities on biological pathways

artículo científico publicado en 2012

WikiPathways: capturing the full diversity of pathway knowledge

artículo científico

WikiPathways: connecting communities ⬇️

artículo científico publicado en 2020

A resource to explore the discovery of rare diseases and their causative genes

artículo científico publicado en 2021

Lista de obras de Martina Summer-Kutmon

A bioinformatics workflow to decipher transcriptomic data from vitamin D studies

A network biology workflow to study transcriptomics data of the diabetic liver

A pathway approach to investigate the function and regulation of SREBPs

A protocol for adding knowledge to Wikidata, a case report

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses ⬇️

Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus-A Co-expression Network Based Analysis

BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb)

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

Comparison of metabolic states using genome-scale metabolic models

Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open-angle glaucoma

Corrigendum: The BioPAX community standard for pathway data sharing

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis

Discovering life's directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool

EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform

Exploring the cellular network of metabolic flexibility in the adipose tissue.

From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results

Glycolysis and Gluconeogenesis

Guiding the choice of informatics software and tools for lipidomics research applications

History of rare diseases and their genetic causes - a data driven approach

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

Inferring causal molecular networks: empirical assessment through a community-based effort

Integrated visualization of a multi-omics study of starvation in mouse intestine

Integrated visualization of a multi-omics study of starvation in mouse intestine

Integrative multiomics analysis of human atherosclerosis reveals a serum response factor-driven network associated with intraplaque hemorrhage

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts

Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Managing biological data in pathways and networks ⬇️

PathVisio 3: an extendable pathway analysis toolbox

Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D.

Pathway information extracted from 25 years of pathway figures

Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services

Reactome from a WikiPathways Perspective

Sexual Dimorphism, Age, and Fat Mass Are Key Phenotypic Drivers of Proteomic Signatures

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation

Systems Biology in ELIXIR: modelling in the spotlight

TCA Cycle

Ten simple rules for creating reusable pathway models for computational analysis and visualization

The BioPAX community standard for pathway data sharing

The Importance of Modularity in Bioinformatics Tools

The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension

The systems biology format converter

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways

WikiPathways 2024: next generation pathway database

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

WikiPathways: building research communities on biological pathways

WikiPathways: capturing the full diversity of pathway knowledge

WikiPathways: connecting communities ⬇️

A resource to explore the discovery of rare diseases and their causative genes